Objective
Using nanoflow LC coupled on-line to a novel FTICR mass spectrometer we want to describe the complexity of histone modifications and define co-occurring modifications. We want to then investigate the biological role of these simultaneous present modifications by using synthetic peptides for pull-down experiments and stable isotope labelling for quantitation and effective background subtraction to identify specifically binding proteins. We will focus after the implementation and test of the methods in a global scenario on metH3K9 which is central for gene silencing. In this way we intend to find out if other modifications are involved in fine-tuning and regulating gene silencing. This is central for our understanding of the histone code and epigenetics and may lead to a better understanding of cancer.
M. Salek will move for this project to J. Rappsilber's group in Milan. He brings with him the experience of a PhD in mass spectrometric analysis of protein modifications and method development. He will be trained in LC-MS and FTICR MS and expand his experimental repertoire by peptide synthesis and pull down experiments. He will expand his analytical training into medical direction joining a campus that hosts two large cancer research institutes and is affiliated with two major cancer hospitals in Milan. The increased expertise in technology, in medical applications, and in administration will put him after this fellowship in an excellent position to respond to the European urge for proteomics groups.
J. Rappsilber's group will gain with M. Salek competence essential for the proposed project and for the success of the group. M. Salek's connection to his former lab will result in transfer of expertise in the analysis of protein modification and long term access to instrumentation available there. M. Salek will go for a short stay to M. Mann's lab, one of the leading proteomics centres worldwide, and allow tightening the link to this lab while getting himself networked.
Fields of science (EuroSciVoc)
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.
- natural sciences biological sciences biochemistry biomolecules proteins proteomics
- medical and health sciences clinical medicine oncology
- natural sciences chemical sciences analytical chemistry mass spectrometry
- natural sciences biological sciences genetics epigenetics
- natural sciences biological sciences molecular biology
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Keywords
Project’s keywords as indicated by the project coordinator. Not to be confused with the EuroSciVoc taxonomy (Fields of science)
Project’s keywords as indicated by the project coordinator. Not to be confused with the EuroSciVoc taxonomy (Fields of science)
Programme(s)
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
Topic(s)
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Call for proposal
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
FP6-2002-MOBILITY-5
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Funding Scheme
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
Coordinator
MILAN
Italy
The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.