Resultado final Documents, reports (33) Release of software libraries for the standard format This in accompaniment to the standard format developed in WP2, Task 2.4. Release of a version of CellMissy that can import data from the public repository Release of a version of CellMissy that can import data from the public repository. Project progress report for Year 2 Yearly progress report of the project. Report on the structures and approaches set up for maintenance and updates to the standards Report on the structures and approaches set up for maintenance and updates to the standards. Release of standards compliant CellMissy version This version of CellMissy will comply to the standards version submitted for community review, and will have prototype submission functionality to the central repository. Project progress report for Year 1 Yearly progress report of the project. Project progress report for Year 3 Yearly progress report of the project. Report on the two CMSO workshops and proceedings manuscripts in year 1 Report on the two CMSO workshops and proceedings manuscripts in year 1. Report on experimental procedures and multi-parameter analysis from tumor and immune cell models for computational multiscale analysis Standardized procedures and data sets from patient-derived tumor and immune cell models Report on the development of meta-scale analysis algorithms Report on the development of meta-scale analysis algorithms. Report on the two CMSO workshops and proceedings manuscripts in year 3 Report on the two CMSO workshops and proceedings manuscripts in year 3. Support for the CMSO standards in IB’s relevant commercial software Implementation of the CMSO standards in IB’s relevant software tool(s). Report on the maintenance and updates carried out on the standard, and the plans for further support beyond project end Report on the maintenance and updates carried out on the standard, and the plans for further support beyond project end. Report on the two CMSO workshops and proceedings manuscripts in year 2 Report on the two CMSO workshops and proceedings manuscripts in year 2. Standardized, refined procedures and data sets from tumor and immune cell models for computational multi-scale analysis First release of the functional repository The functionality included will be: a data storage and submission back-end with links to the UK image storage system, a user-oriented front-end that allows querying of the data, and retrieval of submitted data sets. Creation of project website Creation of project website. Release of a medical-oriented knowledgebase Release of a medical-oriented knowledgebase, built on the data in the public repository. Release of an open semantic validation framework for MIACME compliance verification Release of an open semantic validation framework for MIACME compliance verification. Implementation of automated MIACME compliance validation Implementation of automated MIACME compliance validation. Report on the development of quality control algorithms Report on the development of quality control algorithms. Creation of the Cell Migration Standardization Organization (CMSO) This includes a description of the Steering Committee, working groups with Chair and Secretary, web site and mailing list, and approved community review process and Editor. Requirements analysis for the cell migration repository Requirements analysis for the cell migration repository. Report on the development of dedicated cell migration feature extraction algorithms Report on the development of dedicated cell migration feature extraction algorithms. Implementation of a discussion forum module Implementation of a discussion forum module. Release of the standard format for cell migration data This will take place via registration in BioSharing, and submission of the data standard package (including formal standard format, example files, specification documentation, a CV term-mapping schema, and compatible software libraries) to the CMSO community review process. Report on the creation of a CV This includes the analysis and re-use of existing CVs, a community approved procedure for extension and maintenance of CV terms within CMSO, along with appointment of a CV Editor, and the creation of the first new, field-specific terms, either as additions to an existing CV, or in a newly created one. Implementation of REST and BioMart services Implementation of REST and BioMart data access interfaces. Release of the MIACME minimal reporting requirements This release will take place via registration in BioSharing, and submission of the finalized MIACME document to the CMSO community review process, including a checklist version to aid compliance verification. Submission of the second position paper This paper will describe the fully operational public data repository and its role in establishing an open data exchange ecosystem. Submission of the first position paper This paper will be related to the submission of all standards to the CMSO community review process. Report on the development of multiscale analysis algorithms for complex multivariate data Report on the development of multiscale analysis algorithms for complex multivariate data. Publicaciones Peer reviewed articles (10) DoRes within CellMissy: dose-response analysis on cell migration and related data Autores: Gwendolien Sergeant, Lennart Martens, Marleen Van Troys, Paola Masuzzo Publicado en: Bioinformatics, 2018, ISSN 1367-4803 Editor: Oxford University Press DOI: 10.1093/bioinformatics/bty634 Tuning Collective Cell Migration by Cell–Cell Junction Regulation Autores: Peter Friedl, Roberto Mayor Publicado en: Cold Spring Harbor Perspectives in Biology, Issue 9/4, 2017, Page(s) a029199, ISSN 1943-0264 Editor: Cold Spring Harbor Laboratory Press DOI: 10.1101/cshperspect.a029199 Image Data Resource: a bioimage data integration and publication platform Autores: Eleanor Williams, Josh Moore, Simon W Li, Gabriella Rustici, Aleksandra Tarkowska, Anatole Chessel, Simone Leo, Bálint Antal, Richard K Ferguson, Ugis Sarkans, Alvis Brazma, Rafael E Carazo Salas, Jason R Swedlow Publicado en: Nature Methods, Issue 14/8, 2017, Page(s) 775-781, ISSN 1548-7091 Editor: Nature Publishing Group DOI: 10.1038/nmeth.4326 KIF13A‐regulated RhoB plasma membrane localization governs membrane blebbing and blebby amoeboid cell migration Autores: Xiaowei Gong, Yuliia Didan, John G Lock, Staffan Strömblad Publicado en: The EMBO Journal, Issue 37/17, 2018, Page(s) e98994, ISSN 0261-4189 Editor: Nature Publishing Group DOI: 10.15252/embj.201898994 The ontology for biomedical investigations Autores: Whetzel, Patricia L; Overton, James A.; Phillip Lord; Yu Lin; Jennifer Fostel; Monnie McGee; Anita Bandrowski; Ryan Brinkman; Stoeckert, Christian J.; Chibucos, Marcus C.; Bjoern Peters; Helen Parkinson; Soldatova, Larisa N; James Malone; Taylor, Chris F; Mathias Brochhausen; Lister, Allyson L; Kevin Clancy; Philippe Rocca-Serra; Mark Jensen; Susanna-Assunta Sansone; Carlo Torniai; Michel Dumontie Publicado en: PLoS ONE, Issue 11, 2016, Page(s) p e0154556, ISSN 1932-6203 Editor: Public Library of Science DOI: 10.1371/journal.pone.0154556 The academic, economic and societal impacts of Open Access: an evidence-based review Autores: Jonathan P. Tennant, François Waldner, Damien C. Jacques, Paola Masuzzo, Lauren B. Collister, Chris. H. J. Hartgerink Publicado en: F1000Research, Issue 5, 2016, Page(s) 632, ISSN 2046-1402 Editor: F1000 Research Ltd. DOI: 10.12688/f1000research.8460.1 An end-to-end software solution for the analysis of high-throughput single-cell migration data Autores: Paola Masuzzo, Lynn Huyck, Aleksandra Simiczyjew, Christophe Ampe, Lennart Martens, Marleen Van Troys Publicado en: Scientific Reports, Issue 7, 2017, Page(s) 42383, ISSN 2045-2322 Editor: Nature Publishing Group DOI: 10.1038/srep42383 Fully Automated Evaluation of Total Glomerular Number and Capillary Tuft Size in Nephritic Kidneys Using Lightsheet Microscopy Autores: Anika Klingberg, Anja Hasenberg, Isis Ludwig-Portugall, Anna Medyukhina, Linda Männ, Alexandra Brenzel, Daniel R. Engel, Marc Thilo Figge, Christian Kurts, Matthias Gunzer Publicado en: Journal of the American Society of Nephrology, Issue 28/2, 2017, Page(s) 452-459, ISSN 1046-6673 Editor: Lippincott Williams & Wilkins Ltd. DOI: 10.1681/ASN.2016020232 A design framework and exemplar metrics for FAIRness Autores: Mark D. Wilkinson, Susanna-Assunta Sansone, Erik Schultes, Peter Doorn, Luiz Olavo Bonino da Silva Santos, Michel Dumontier Publicado en: Scientific Data, Issue 5/1, 2018, Page(s) 180118, ISSN 2052-4463 Editor: Springer Nature DOI: 10.1038/sdata.2018.118 Community standards for open cell migration data Autores: Alejandra N Gonzalez-Beltran, Paola Masuzzo, Christophe Ampe, Gert-Jan Bakker, Sébastien Besson, Robert H Eibl, Peter Friedl, Matthias Gunzer, Mark Kittisopikul, Sylvia E Le Dévédec, Simone Leo, Josh Moore, Yael Paran, Jaime Prilusky, Philippe Rocca-Serra, Philippe Roudot, Marc Schuster, Gwendolien Sergeant, Staffan Strömblad, Jason R Swedlow, Merijn van Erp, Marleen Van Troys, Assaf Zaritsk Publicado en: GigaScience, Issue 9/5, 2020, ISSN 2047-217X Editor: Oxford University Press DOI: 10.1093/gigascience/giaa041 Buscando datos de OpenAIRE... Se ha producido un error en la búsqueda de datos de OpenAIRE No hay resultados disponibles