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CORDIS - EU research results
CORDIS

Fast Assay for Pathogen Identification and Characterisation

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Sample collection B (opens in new window)

Sample collection from known positive environmental samples and prescreen using method.

Randomized and blinded panels (opens in new window)

Preparation of randomised and blinded panels for analysis of two extraction methods.

Publications

Extended-spectrum beta-lactamases and plasmid diversity in urinary isolates of Escherichia coli in Croatia: a nation-wide, multicentric, retrospective study (opens in new window)

Author(s): Marija Krilanović, Maja Tomić-Paradžik, Tomislav Meštrović, Nataša Beader, Zoran Herljević, Rick Conzemius, Ivan Barišić, Jasmina Vraneš, Vesna Elveđi-Gašparović, Branka Bedenić
Published in: Folia Microbiologica, Issue 65/4, 2020, Page(s) 649-667, ISSN 0015-5632
Publisher: Academy of Sciences of the Czech Republic
DOI: 10.1007/s12223-019-00769-1

Epidemiology of colistin-resistant, carbapenemase-producing Enterobacteriaceae and Acinetobacter baumannii in Croatia (opens in new window)

Author(s): Valentino D’Onofrio, Rick Conzemius, Dijana Varda-Brkić, Maja Bogdan, Andrea Grisold, Inge C. Gyssens, Branka Bedenić, Ivan Barišić
Published in: Infection, Genetics and Evolution, Issue 81, 2020, Page(s) 104263, ISSN 1567-1348
Publisher: Elsevier BV
DOI: 10.1016/j.meegid.2020.104263

Audit of empirical antibiotic therapy for sepsis and the effect of multidisciplinary consultation on early antibiotic therapy changes and patient outcomes

Author(s): Valentino D’Onofrio, Agnes Meersman, Koen Magerman, Luc Waumans, Karlijn Van Halem, Jeroen Van der Hilst, Reinoud Cartuyvels, Peter Messiaen, Inge C Gyssens
Published in: International Journal of Antimicrobial Agents, Issue Submitted, 2021, Page(s) Submitted, ISSN 0000-0000
Publisher: Elsevier

In-silico Design of DNA Oligonucleotides: Challenges and Approaches (opens in new window)

Author(s): Ivan Barisic
Published in: Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 1056-1065 (2019), Issue 1, 2019, Page(s) 1056-1065, ISSN 2001-0370
Publisher: Elsevier BV
DOI: 10.1016/j.csbj.2019.07.008

The Clinical Impact of Rapid Molecular Microbiological Diagnostics for Pathogen and Resistance Gene Identification in Patients With Sepsis: A Systematic Review (opens in new window)

Author(s): Valentino D’Onofrio, Lene Salimans, Branka Bedenić, Reinoud Cartuyvels, Ivan Barišić, Inge C Gyssens
Published in: Open Forum Infectious Diseases, Issue 7/10, 2020, ISSN 2328-8957
Publisher: Open Forum Infectious Diseases
DOI: 10.1093/ofid/ofaa352

Risk factors for mortality, ICU admission and bacteremia in patients suspected of sepsis at the Emergency department. A prospective cohort study (opens in new window)

Author(s): Valentino D’Onofrio, Agnes Meersman, Sara Vijgen, Reinoud Cartuyvels, Peter Messiaen, Inge C Gyssens
Published in: Open Forum Infectious Diseases, 2020, ISSN 2328-8957
Publisher: Oxford academic
DOI: 10.1093/ofid/ofaa594

PRIMEval: Optimization and screening of multiplex oligonucleotide assays (opens in new window)

Author(s): Rick Conzemius, Michaela Hendling, Stephan Pabinger, Ivan Barišić
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-55883-4

Gram-negative bacteria as causative agents of ventilator-associated pneumonia and their respective resistance mechanisms (opens in new window)

Author(s): Daniela Bandić-Pavlović, Tajana Zah-Bogović, Marta Žižek, Luka Bielen, Vesna Bratić, Pero Hrabač, Domagoj Slačanac, Slobodan Mihaljević, Branka Bedenić
Published in: Journal of Chemotherapy, Issue 32/7, 2020, Page(s) 344-358, ISSN 1120-009X
Publisher: Maney Publishing
DOI: 10.1080/1120009x.2020.1793594

Emergence of multidrug-resistant Proteus mirabilis in a long-term care facility in Croatia (opens in new window)

Author(s): Branka Bedenić, Nataša Firis, Vesna Elveđi-Gašparović, Marija Krilanović, Krešimir Matanović, Iva Štimac, Josefa Luxner, Jasmina Vraneš, Tomislav Meštrović, Gernot Zarfel, Andrea Grisold
Published in: Wiener klinische Wochenschrift, Issue 128/11-12, 2016, Page(s) 404-413, ISSN 0043-5325
Publisher: Springer Verlag
DOI: 10.1007/s00508-016-1005-x

Molecular characterization of class b carbapenemases in advanced stage of dissemination and emergence of class d carbapenemases in Enterobacteriaceae from Croatia (opens in new window)

Author(s): Branka Bedenić, Sanda Sardelić, Josefa Luxner, Zrinka Bošnjak, Dijana Varda-Brkić, Amarela Lukić-Grlić, Ivana Mareković, Sonja Frančula-Zaninović, Marija Krilanović, Dorotea Šijak, Andrea Grisold, Gernot Zarfel
Published in: Infection, Genetics and Evolution, Issue 43, 2016, Page(s) 74-82, ISSN 1567-1348
Publisher: Elsevier BV
DOI: 10.1016/j.meegid.2016.05.011

Oli2go: an automated multiplex oligonucleotide design tool (opens in new window)

Author(s): Michaela Hendling, Stephan Pabinger, Konrad Peters, Noa Wolff, Rick Conzemius, Ivan Barišić
Published in: Nucleic Acids Research, Issue 46/W1, 2018, Page(s) W252-W256, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gky319

Arrival of carbapenem-hydrolyzing-oxacillinases in Acinetobacter baumannii in Bosnia and Herzegovina (opens in new window)

Author(s): Tanja Petrović, Selma Uzunović, Ivan Barišić, Josefa Luxner, Andrea Grisold, Gernot Zarfel, Amir Ibrahimagić, Sanja Jakovac, Domagoj Slaćanac, Branka Bedenić
Published in: Infection, Genetics and Evolution, Issue 58, 2018, Page(s) 192-198, ISSN 1567-1348
Publisher: Elsevier BV
DOI: 10.1016/j.meegid.2017.12.021

Epidemic spread of OXA-48 beta-lactamase in Croatia (opens in new window)

Author(s): Branka Bedenić, Mia Slade, Lidija Žele Starčević, Sanda Sardelić, Mirna Vranić-Ladavac, Ana Benčić, Vlasta Zujić Atalić, Maja Bogdan, Marina Bubonja-Šonje, Maja Tomić-Paradžik, Tatjana Tot, Amarela Lukić-Grlić, Domagoj Drenjančević, Dijana Varda-Brkić, Daniela Bandić-Pavlović, Slobodan Mihaljević, Gernot Zarfel, Marija Gužvinec, Rick Conzemius, Ivan Barišić, Arjana Tambić-
Published in: Journal of Medical Microbiology, Issue 67/8, 2018, Page(s) 1031-1041, ISSN 0022-2615
Publisher: Society for General Microbiology
DOI: 10.1099/jmm.0.000777

Boron Doped Diamond as a Low Biofouling Material in Aquatic Environments: Assessment of Pseudomonas aeruginosa Biofilm Formation (opens in new window)

Author(s): Lee J. Simcox, Rui P. A. Pereira, Elizabeth M. H. Wellington, Julie V. Macpherson
Published in: ACS Applied Materials & Interfaces, Issue 11/28, 2019, Page(s) 25024-25033, ISSN 1944-8244
Publisher: American Chemical Society
DOI: 10.1021/acsami.9b07245

Differentiating influenza from COVID-19 in patients presenting with suspected sepsis (opens in new window)

Author(s): Valentino D’Onofrio, Eveline Van Steenkiste, Agnes Meersman, Luc Waumans, Reinoud Cartuyvels, Karlijn Van Halem, Peter Messiaen, Inge C. Gyssens
Published in: European Journal of Clinical Microbiology & Infectious Diseases, 2020, ISSN 0934-9723
Publisher: Springer Verlag
DOI: 10.1007/s10096-020-04109-x

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