Small RNA regulation of the body plan and epigenome in Arabidopsis embryos

Project Information

sRNA-EMB

Grant agreement ID: 637888

DOI 10.3030/637888

Project closed

EC signature date 20 June 2015

Start date 1 July 2015

End date 30 June 2020

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 499 988,99

EU contribution € 1 499 988,99

Coordinated by

GREGOR MENDEL INSTITUT FUR MOLEKULARE PFLANZENBIOLOGIE GMBH
Austria

Publications

Peer reviewed articles (6)

Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data

Author(s): Stefan Lutzmayer, Balaji Enugutti, Michael D. Nodine
Published in: Scientific Reports, Issue 7/1, 2017, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-017-06174-3

Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Data Sets

Author(s): Michael A. Schon, Michael D. Nodine
Published in: The Plant Cell, Issue 29/4, 2017, Page(s) 608-617, ISSN 1040-4651
Publisher: American Society of Plant Biologists
DOI: 10.1105/tpc.16.00845

MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis

Author(s): Alexandra Plotnikova, Max J. Kellner, Michael A. Schon, Magdalena Mosiolek, Michael D. Nodine
Published in: The Plant Cell, Issue 31/12, 2019, Page(s) 2929-2946, ISSN 1040-4651
Publisher: American Society of Plant Biologists
DOI: 10.1105/tpc.19.00395

NanoPARE: parallel analysis of RNA 5′ ends from low-input RNA

Author(s): Michael A. Schon, Max J. Kellner, Alexandra Plotnikova, Falko Hofmann, Michael D. Nodine
Published in: Genome Research, Issue 28/12, 2018, Page(s) 1931-1942, ISSN 1088-9051
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.239202.118

The embryonic transcriptome of Arabidopsis thaliana

Author(s): Falko Hofmann, Michael A. Schon, Michael D. Nodine
Published in: Plant Reproduction, Issue 32/1, 2019, Page(s) 77-91, ISSN 2194-7953
Publisher: Springer Verlag
DOI: 10.1007/s00497-018-00357-2

Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis

Author(s): Ranjith K. Papareddy, Katalin Páldi, Subramanian Paulraj, Ping Kao, Stefan Lutzmayer, Michael D. Nodine
Published in: Genome Biology, Issue 21, 2020, Page(s) 1-24, ISSN 1474-760X
Publisher: Springer Nature
DOI: 10.1186/s13059-020-02163-4

Book chapters (1)

Small RNA In Situ Hybridizations on Sections of Arabidopsis Embryos

Author(s): Katalin Páldi, Magdalena Mosiolek, Michael D. Nodine
Published in: Plant Embryogenesis - Methods and Protocols, Issue 2122, 2020, Page(s) 87-99, ISBN 978-1-0716-0341-3
Publisher: Springer US
DOI: 10.1007/978-1-0716-0342-0_7