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Imaging Brain Circuits to Decode Brain Computations: Multimodal Multiscale Imaging of Cortical Microcircuits to Model Predictive Coding in Human Vision

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Publications

hFRUIT: An optimized agent for optical clearing of DiI-stained adult human brain tissue

Author(s): Sven Hildebrand, Anna Schueth, Klaus von Wangenheim, Christian Mattheyer, Francesco Pampaloni, Hansjürgen Bratzke, Alard F. Roebroeck, Ralf A. W. Galuske
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
DOI: 10.1038/s41598-020-66999-3

Compressed Sensing Diffusion Spectrum Imaging for Accelerated Diffusion Microstructure MRI in Long-Term Population Imaging

Author(s): Alexandra Tobisch, Rüdiger Stirnberg, Robbert L. Harms, Thomas Schultz, Alard Roebroeck, Monique M. B. Breteler, Tony Stöcker
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00650

Robust and fast nonlinear optimization of diffusion MRI microstructure models

Author(s): R.L. Harms, F.J. Fritz, A. Tobisch, R. Goebel, A. Roebroeck
Published in: NeuroImage, Issue 155, 2017, Page(s) 82-96, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2017.04.064

Determining Excitatory and Inhibitory Neuronal Activity from Multimodal fMRI Data Using a Generative Hemodynamic Model

Author(s): Martin Havlicek, Dimo Ivanov, Alard Roebroeck, Kamil Uludağ
Published in: Frontiers in Neuroscience, Issue 11, 2017, ISSN 1662-453X
DOI: 10.3389/fnins.2017.00616

High resolution anatomical and quantitative MRI of the entire human occipital lobe ex vivo at 9.4 T

Author(s): S. Sengupta, F.J. Fritz, R.L. Harms, S. Hildebrand, D.H.Y. Tse, B.A. Poser, R. Goebel, A. Roebroeck
Published in: NeuroImage, 2017, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2017.03.039

On the importance of modeling fMRI transients when estimating effective connectivity: A dynamic causal modeling study using ASL data

Author(s): Martin Havlicek, Alard Roebroeck, Karl J. Friston, Anna Gardumi, Dimo Ivanov, Kamil Uludag
Published in: NeuroImage, Issue 155, 2017, Page(s) 217-233, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2017.03.017

T1 relaxometry of crossing fibres in the human brain

Author(s): Silvia De Santis, Yaniv Assaf, Ben Jeurissen, Derek K Jones, Alard Roebroeck
Published in: NeuroImage, Issue 141, 2016, Page(s) 133-142, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2016.07.037

A Specialized Multi-Transmit Head Coil for High Resolution fMRI of the Human Visual Cortex at 7T

Author(s): Shubharthi Sengupta, Alard Roebroeck, Valentin G. Kemper, Benedikt A. Poser, Jan Zimmermann, Rainer Goebel, Gregor Adriany
Published in: PLOS ONE, Issue 11/12, 2016, Page(s) e0165418, ISSN 1932-6203
DOI: 10.1371/journal.pone.0165418

Ultra-High Field MRI Post Mortem Structural Connectivity of the Human Subthalamic Nucleus, Substantia Nigra, and Globus Pallidus

Author(s): Birgit R. Plantinga, Alard Roebroeck, Valentin G. Kemper, Kâmil Uludağ, Maartje Melse, Jürgen Mai, Mark L. Kuijf, Andreas Herrler, Ali Jahanshahi, Bart M. ter Haar Romeny, Yasin Temel
Published in: Frontiers in Neuroanatomy, Issue 10, 2016, ISSN 1662-5129
DOI: 10.3389/fnana.2016.00066

Including diffusion time dependence in the extra-axonal space improves in vivo estimates of axonal diameter and density in human white matter

Author(s): Silvia De Santis, Derek K. Jones, Alard Roebroeck
Published in: NeuroImage, Issue 130, 2016, Page(s) 91-103, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2016.01.047

Automatic Segmentation of Human Cortical Layer-Complexes and Architectural Areas Using Ex vivo Diffusion MRI and Its Validation

Author(s): Matteo Bastiani, Ana-Maria Oros-Peusquens, Arne Seehaus, Daniel Brenner, Klaus Möllenhoff, Avdo Celik, Jörg Felder, Hansjürgen Bratzke, Nadim J. Shah, Ralf Galuske, Rainer Goebel, Alard Roebroeck
Published in: Frontiers in Neuroscience, Issue 10, 2016, ISSN 1662-453X
DOI: 10.3389/fnins.2016.00487

Robust and Fast Markov Chain Monte Carlo Sampling of Diffusion MRI Microstructure Models

Author(s): Robbert L. Harms, Alard Roebroeck
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00097

Ultra-high resolution and multi-shell diffusion MRI of intact ex vivo human brains using kT-dSTEAM at 9.4T

Author(s): F.J. Fritz, S. Sengupta, R.L. Harms, D.H. Tse, B.A. Poser, A. Roebroeck
Published in: NeuroImage, Issue 202, 2019, Page(s) 116087, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.116087

Ex vivo diffusion MRI of the human brain: Technical challenges and recent advances

Author(s): Alard Roebroeck, Karla L. Miller, Manisha Aggarwal
Published in: NMR in Biomedicine, Issue 32/4, 2018, Page(s) e3941, ISSN 0952-3480
DOI: 10.1002/nbm.3941

Curvilinear locus coeruleus functional connectivity trajectories over the adult lifespan: a 7T MRI study

Author(s): Heidi I.L. Jacobs, Lisa Müller-Ehrenberg, Nikos Priovoulos, Alard Roebroeck
Published in: Neurobiology of Aging, Issue 69, 2018, Page(s) 167-176, ISSN 0197-4580
DOI: 10.1016/j.neurobiolaging.2018.05.021

Scalable cytoarchitectonic characterization of large intact human neocortex samples

Author(s): Roebroeck, Alard; Galuske, Ralf; Herrler, Andreas; Schueth, Anna; Hildebrand, Sven
Published in: Nature Scientific Reports, Issue 1, 2018, ISSN 2045-2322
DOI: 10.1101/274985