Imaging Brain Circuits to Decode Brain Computations: Multimodal Multiscale Imaging of Cortical Microcircuits to Model Predictive Coding in Human Vision

Monte Carlo Simulation of Diffusion MRI in geometries constructed from two-photon microscopy of cortical gray matter

Autores: Alard Roebroeck; Nima Gilani; Anna Schueth; Sven Hildebrand
Publicado en: Edición 2, 2019
Editor: bioRxiv
DOI: 10.1101/626945

MESMERISED: Super-accelerated 7 T STEAM imaging for quantitative multi-contrast and diffusion MRI

Autores: F.J. Fritz, B.A. Poser, A. Roebroeck
Publicado en: 2020
Editor: bioRxiv
DOI: 10.1101/2020.05.15.098269

Fast quantification of uncertainty in non-linear diffusion MRI models for artifact detection and more power in group studies

Autores: Robbert L. Harms; Sanne Schoenmakers; Alard J. Roebroeck; Francisco J. Fritz
Publicado en: Edición 1, 2019
Editor: bioRxiv
DOI: 10.1101/651547

hFRUIT: An optimized agent for optical clearing of DiI-stained adult human brain tissue

Autores: Sven Hildebrand, Anna Schueth, Klaus von Wangenheim, Christian Mattheyer, Francesco Pampaloni, Hansjürgen Bratzke, Alard F. Roebroeck, Ralf A. W. Galuske
Publicado en: Scientific Reports, Edición 10/1, 2020, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-020-66999-3

Compressed Sensing Diffusion Spectrum Imaging for Accelerated Diffusion Microstructure MRI in Long-Term Population Imaging

Autores: Alexandra Tobisch, Rüdiger Stirnberg, Robbert L. Harms, Thomas Schultz, Alard Roebroeck, Monique M. B. Breteler, Tony Stöcker
Publicado en: Frontiers in Neuroscience, Edición 12, 2018, ISSN 1662-453X
Editor: Frontiers Research Foundation
DOI: 10.3389/fnins.2018.00650

Robust and fast nonlinear optimization of diffusion MRI microstructure models

Autores: R.L. Harms, F.J. Fritz, A. Tobisch, R. Goebel, A. Roebroeck
Publicado en: NeuroImage, Edición 155, 2017, Página(s) 82-96, ISSN 1053-8119
Editor: Academic Press
DOI: 10.1016/j.neuroimage.2017.04.064

Determining Excitatory and Inhibitory Neuronal Activity from Multimodal fMRI Data Using a Generative Hemodynamic Model

Autores: Martin Havlicek, Dimo Ivanov, Alard Roebroeck, Kamil Uludağ
Publicado en: Frontiers in Neuroscience, Edición 11, 2017, ISSN 1662-453X
Editor: Frontiers
DOI: 10.3389/fnins.2017.00616

High resolution anatomical and quantitative MRI of the entire human occipital lobe ex vivo at 9.4 T

Autores: S. Sengupta, F.J. Fritz, R.L. Harms, S. Hildebrand, D.H.Y. Tse, B.A. Poser, R. Goebel, A. Roebroeck
Publicado en: NeuroImage, 2017, ISSN 1053-8119
Editor: Academic Press
DOI: 10.1016/j.neuroimage.2017.03.039

On the importance of modeling fMRI transients when estimating effective connectivity: A dynamic causal modeling study using ASL data

Autores: Martin Havlicek, Alard Roebroeck, Karl J. Friston, Anna Gardumi, Dimo Ivanov, Kamil Uludag
Publicado en: NeuroImage, Edición 155, 2017, Página(s) 217-233, ISSN 1053-8119
Editor: Academic Press
DOI: 10.1016/j.neuroimage.2017.03.017

T1 relaxometry of crossing fibres in the human brain

Autores: Silvia De Santis, Yaniv Assaf, Ben Jeurissen, Derek K Jones, Alard Roebroeck
Publicado en: NeuroImage, Edición 141, 2016, Página(s) 133-142, ISSN 1053-8119
Editor: Academic Press
DOI: 10.1016/j.neuroimage.2016.07.037

A Specialized Multi-Transmit Head Coil for High Resolution fMRI of the Human Visual Cortex at 7T

Autores: Shubharthi Sengupta, Alard Roebroeck, Valentin G. Kemper, Benedikt A. Poser, Jan Zimmermann, Rainer Goebel, Gregor Adriany
Publicado en: PLOS ONE, Edición 11/12, 2016, Página(s) e0165418, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0165418

Ultra-High Field MRI Post Mortem Structural Connectivity of the Human Subthalamic Nucleus, Substantia Nigra, and Globus Pallidus

Autores: Birgit R. Plantinga, Alard Roebroeck, Valentin G. Kemper, Kâmil Uludağ, Maartje Melse, Jürgen Mai, Mark L. Kuijf, Andreas Herrler, Ali Jahanshahi, Bart M. ter Haar Romeny, Yasin Temel
Publicado en: Frontiers in Neuroanatomy, Edición 10, 2016, ISSN 1662-5129
Editor: Frontiers Research Foundation
DOI: 10.3389/fnana.2016.00066

Including diffusion time dependence in the extra-axonal space improves in vivo estimates of axonal diameter and density in human white matter

Autores: Silvia De Santis, Derek K. Jones, Alard Roebroeck
Publicado en: NeuroImage, Edición 130, 2016, Página(s) 91-103, ISSN 1053-8119
Editor: Academic Press
DOI: 10.1016/j.neuroimage.2016.01.047

Automatic Segmentation of Human Cortical Layer-Complexes and Architectural Areas Using Ex vivo Diffusion MRI and Its Validation

Autores: Matteo Bastiani, Ana-Maria Oros-Peusquens, Arne Seehaus, Daniel Brenner, Klaus Möllenhoff, Avdo Celik, Jörg Felder, Hansjürgen Bratzke, Nadim J. Shah, Ralf Galuske, Rainer Goebel, Alard Roebroeck
Publicado en: Frontiers in Neuroscience, Edición 10, 2016, ISSN 1662-453X
Editor: Frontiers Research Foundation
DOI: 10.3389/fnins.2016.00487

Robust and Fast Markov Chain Monte Carlo Sampling of Diffusion MRI Microstructure Models

Autores: Robbert L. Harms, Alard Roebroeck
Publicado en: Frontiers in Neuroinformatics, Edición 12, 2018, ISSN 1662-5196
Editor: Frontiers Research Foundation
DOI: 10.3389/fninf.2018.00097

Ultra-high resolution and multi-shell diffusion MRI of intact ex vivo human brains using kT-dSTEAM at 9.4T

Autores: F.J. Fritz, S. Sengupta, R.L. Harms, D.H. Tse, B.A. Poser, A. Roebroeck
Publicado en: NeuroImage, Edición 202, 2019, Página(s) 116087, ISSN 1053-8119
Editor: Academic Press
DOI: 10.1016/j.neuroimage.2019.116087

Ex vivo diffusion MRI of the human brain: Technical challenges and recent advances

Autores: Alard Roebroeck, Karla L. Miller, Manisha Aggarwal
Publicado en: NMR in Biomedicine, Edición 32/4, 2018, Página(s) e3941, ISSN 0952-3480
Editor: John Wiley & Sons Inc.
DOI: 10.1002/nbm.3941

Curvilinear locus coeruleus functional connectivity trajectories over the adult lifespan: a 7T MRI study

Autores: Heidi I.L. Jacobs, Lisa Müller-Ehrenberg, Nikos Priovoulos, Alard Roebroeck
Publicado en: Neurobiology of Aging, Edición 69, 2018, Página(s) 167-176, ISSN 0197-4580
Editor: Elsevier BV
DOI: 10.1016/j.neurobiolaging.2018.05.021

Scalable cytoarchitectonic characterization of large intact human neocortex samples

Autores: Roebroeck, Alard; Galuske, Ralf; Herrler, Andreas; Schueth, Anna; Hildebrand, Sven
Publicado en: Nature Scientific Reports, Edición 1, 2018, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1101/274985

The mesoSPIM initiative: open-source light-sheet mesoscopes for imaging in cleared tissue

Autores: Fabian F. Voigt, Daniel Kirschenbaum, Evgenia Platonova, Stéphane Pagès, Robert A. A. Campbell, Rahel Kästli, Martina Schaettin, Ladan Egolf, Alexander van der Bourg, Philipp Bethge, Karen Haenraets, Noémie Frézel, Thomas Topilko, Paola Perin, Daniel Hillier, Sven Hildebrand, Anna Schueth, Alard Roebroeck, Botond Roska, Esther Stoeckli, Roberto Pizzala, Nicolas Renier, Hanns Ulrich Zeilhofer,
Publicado en: Nature Methods, 2020, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1101/577122

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