2D Conformal mapping of protein surfaces: applications to VIsualization and DOCKing software

Project Information

VIDOCK

Grant agreement ID: 640283

DOI 10.3030/640283

Project closed

EC signature date 11 June 2015

Start date 1 July 2015

End date 31 December 2021

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 498 791,25

EU contribution € 1 498 791,25

Coordinated by

CONSERVATOIRE NATIONAL DES ARTS ET METIERS
France

Publications

Conference proceedings (9)

SHREC 2021: surface-based protein domains retrieval

Author(s): Florent Langenfeld, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Genki Terashi, Xiao Wang, Daisuke Kihara, Halim Benhabiles, Karim Hammoudi, Adnane Cabani,Feryal Windal, Mahmoud Melkemi, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Yonghuai Liu, Léa Sirugue, Huu-Nghia Nguyen, Tuan-Duy Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le, Hai-Dang Nguyen, Minh-Triet Tran, Matthieu Montès
Published in: 3D Shape Retrieval Challenge SHREC 2021 in 14th Eurographics Workshop on 3D Object Retrieval 2021, 2021, Page(s) 19-26, ISBN 978-3-905674-79-8
Publisher: Eurographics
DOI: 10.2312/3dor.20211308

Automatic Molecular Tour Creation: a Study

Author(s): Larroque, Vincent; Maria, Maxime; Mérillou, Stéphane; Montes, Matthieu
Published in: https://hal.science/hal-04225143, Issue 5, 2023, ISSN 2312-6124
Publisher: Eurographics

Immersive sonification of protein surface

Author(s): Bouchara Tifanie, Montes Matthieu
Published in: 2020 IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops (VRW), 2020, Page(s) 380-383
Publisher: IEEE
DOI: 10.1109/vrw50115.2020.00082

Global-to-local protein shape similarity system driven by digital elevation models

Author(s): Daniela Craciun, Jeremy Sirugue, Matthieu Montes
Published in: 2017 2nd International Conference on Bio-engineering for Smart Technologies (BioSMART), 2017, Page(s) 1-4, ISBN 978-1-5386-0706-0
Publisher: IEEE
DOI: 10.1109/BIOSMART.2017.8095317

SHREC 2018 – Protein Shape Retrieval

Author(s): Langenfeld, Florent; Axenopoulos, Apostolos; Chatzitofis, Anargyros; Craciun, Daniela; Daras, Petros; Du, Bowen; Giachetti, Andrea; Lai, Yu-kun; Li, Haisheng; Li, Yingbin; Masoumi, Majid; Peng, Yuxu; Rosin, Paul; Sirugue, Jeremy; Sun, Li; Thermos, Spyridon; Toews, Matthew; Wei, Yang; Wu, Yujuan; Zhai, Yujia; Zhao, Tianyu; Zheng, Yanping; Montes, Matthieu
Published in: Eurographics Workshop on 3D Object Retrieval (2018) 53-61, Issue 1, 2018, ISSN 1997-0463
Publisher: Eurographics Association
DOI: 10.2312/3dor.20181053

Protein Shape Retrieval Contest

Author(s): Langenfeld, Florent; Axenopoulos, Apostolos; Benhabiles, Halim; Daras, Petros; Giachetti, Andrea; Han, Xusi; Hammoudi, Karim; Kihara, Daisuke; Lai, Tuan; Liu, Haiguang; Melkemi, Mahmoud; Mylonas, Stelios; Terashi, Genki; Wang, Yufan; Windal, Feryal; Montes, Matthieu
Published in: 3DOR 2019, Issue 1, 2019
Publisher: Eurographics
DOI: 10.2312/3dor.20191058

SHREC'17 Track: Protein Shape Retrieval

Author(s): Song, Na; Craciun, Daniela; Christoffer, Charles; Han, Xusi; Kihara, Daisuke; Levieux, Guillaume; Montes, Matthieu; Qin, Hong; Sahu, Pranjal; Terashi, Genki; Liu, Haiguang
Published in: 3DOR 2017, Issue 1, 2017, ISBN 978-3-03868-030-7
Publisher: Eurographics
DOI: 10.2312/3dor.20171055

Shape Similarity System driven by Digital Elevation Models for Non-rigid Shape Retrieval

Author(s): Craciun, Daniela; Levieux, Guillaume; Montes, Matthieu
Published in: 3DOR 2017, Issue 1, 2017
Publisher: Eurographics
DOI: 10.2312/3dor.20171051

Immersive sonification of protein surface

Author(s): Tifanie Bouchara; Valère Raigneau; Matthieu Montes
Published in: IHM, Issue 1, 2018
Publisher: ACM
DOI: 10.1145/3286689.3286713

Peer reviewed articles (4)

Surface-based protein domains retrieval methods from a SHREC2021 challenge

Author(s): Florent Langenfeld, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Genki Terashi, Xiao Wang, Daisuke Kihara, Halim Benhabiles, Karim Hammoudi, Adnane Cabani, Feryal Windal, Mahmoud Melkemi, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Yonghuai Liu, Léa Sirugue, Huu-Nghia H Nguyen, Tuan-Duy H Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le, Hai-Dang Nguyen, Minh-Triet Tran, Matthieu Montès
Published in: Journal of Molecular Graphics and Modelling, Issue 111, 2022, Page(s) 108103, ISSN 1093-3263
Publisher: Elsevier BV
DOI: 10.1016/j.jmgm.2021.108103

Comparative Evaluation of Shape Retrieval Methods on Macromolecular Surfaces: An Application of Computer Vision Methods in Structural Bioinformatics

Author(s): Machat, Mohamed; Langenfeld, Florent; Craciun, Daniela; Sirugue, Lea; Labib, Taoufik; Lagarde, Maria; Maria, Maxime; Montes, Matthieu
Published in: Bioinformatics, Issue 2, 2021, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btab511

<i>UDock2</i>: interactive real-time multi-body protein–protein docking software

Author(s): Cyprien Plateau-Holleville; Simon Guionnière; Benjamin Boyer; Brian Jiménez-Garcia; Guillaume Levieux; Stéphane Mérillou; Maxime Maria; Matthieu Montes
Published in: https://academic.oup.com/bioinformatics/article/39/10/btad609/7288885, Issue 2, 2023, ISSN 1367-4811
Publisher: Oxford Press
DOI: 10.1093/bioinformatics/btad609

SHREC 2020: Multi-domain protein shape retrieval challenge

Author(s): Florent Langenfeld, Yuxu Peng, Yu-Kun Lai, Paul L. Rosin, Tunde Aderinwale, Genki Terashi, Charles Christoffer, Daisuke Kihara, Halim Benhabiles, Karim Hammoudi, Adnane Cabani, Feryal Windal, Mahmoud Melkemi, Andrea Giachetti, Stelios Mylonas, Apostolos Axenopoulos, Petros Daras, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Yonghuai Liu, Matthieu Montès
Published in: Computers & Graphics, Issue 91, 2020, Page(s) 189-198, ISSN 0097-8493
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.cag.2020.07.013

Other (2)

PLO3S : Protein LOcal Surficial Similarity Screening

Author(s): Sirugue, Lea; Langenfeld, Florent; Lagarde, Nathalie; Montes, Matthieu
Published in: bioRxiv, 2022
Publisher: BioRxiv
DOI: 10.1101/2022.03.25.484718

Mapping the Future Of Drug Design

Author(s): Montes Matthieu
Published in: 2019
Publisher: EU Researcher