Deliverables
Full Map Transcriptomic/proteomics pipeline
Enrichment tool based on llama antibodies
Verification of gene expression data from in vitro, ex vivo and in vivo samples
Validated PCR assays for resistant Candida isolates
Comparative transcriptomics of all transcriptional data; identification of Candida-specific, species-specific and stage specific fungal and host pattern and factors
OPATHY OMICS pipeline
Validated biomarkers candidiasis
Validated PCR assays for Candida pathogens
OPATHY final symposium and publication
Dissection of RNAseq samples from Candida-blood infections for diagnostic purposes
In vitro, ex vivo and in vivo transcriptional profiles of all Candida species
Analysis of the role of identified factors
In vitro, ex vivo Infection models established and characterized for all Candida species
Improved proteomics-based diagnostics of pathogenic yeast species complexes
Validated biomarkers for resistant Candida isolates
Proteomics-based diagnostics of infected clinical materials
Proteomics-based diagnostics of resistant isolates
Searching for OpenAIRE data...
Publications
Author(s): Mansoureh Vatanshenassan, Teun Boekhout, Cornelia Lass-Flörl, Michaela Lackner, Sören Schubert, Markus Kostrzewa, Katrin Sparbier
Published in: Journal of Clinical Microbiology, Issue 56/9, 2018, ISSN 0095-1137
DOI: 10.1128/JCM.00420-18
Author(s): Amir Arastehfar, Wenjie Fang, Hamid Badali, Afsane Vaezi, Weiwei Jiang, Wanqing Liao, Weihua Pan, Ferry Hagen, Teun Boekhout
Published in: Frontiers in Microbiology, Issue 9, 2018, ISSN 1664-302X
DOI: 10.3389/fmicb.2018.01119
Author(s): Ester Saus, Jesse R. Willis, Leszek P. Pryszcz, Ahmed Hafez, Carlos Llorens, Heinz Himmelbauer, Toni Gabaldón
Published in: RNA, Issue 24/4, 2018, Page(s) 609-619, ISSN 1355-8382
DOI: 10.1261/rna.063073.117
Author(s): Antonio Rodríguez, Mario Vaneechoutte
Published in: BMC Microbiology, Issue 19/1, 2019, ISSN 1471-2180
DOI: 10.1186/s12866-019-1473-z
Author(s): Verónica Mixão, Antonio Perez Hansen, Ester Saus, Teun Boekhout, Cornelia Lass-Florl, Toni Gabaldón
Published in: Frontiers in Genetics, Issue 10, 2019, ISSN 1664-8021
DOI: 10.3389/fgene.2019.00383
Author(s): Aimilia A. Stavrou, Verónica Mixão, Teun Boekhout, Toni Gabaldón
Published in: Yeast, Issue 35/6, 2018, Page(s) 425-429, ISSN 0749-503X
DOI: 10.1002/yea.3303
Author(s): Elise Iracane, Paul D. Donovan, Mihaela Ola, Geraldine Butler, Linda M. Holland
Published in: mSphere, Issue 3/6, 2018, ISSN 2379-5042
DOI: 10.1128/msphere.00532-18
Author(s): Mansoureh Vatanshenassan, Teun Boekhout, Jacques F. Meis, Judith Berman, Anuradha Chowdhary, Ronen Ben-Ami, Katrin Sparbier, Markus Kostrzewa
Published in: Frontiers in Cellular and Infection Microbiology, Issue 9, 2019, ISSN 2235-2988
DOI: 10.3389/fcimb.2019.00020
Author(s): Lisa Lombardi, João Oliveira-Pacheco, Geraldine Butler
Published in: mSphere, Issue 4/2, 2019, ISSN 2379-5042
DOI: 10.1128/msphere.00125-19
Author(s): Afsane Vaezi, Hamed Fakhim, Amir Arastehfar, Tahereh Shokohi, Mohammad T. Hedayati, Sadegh Khodavaisy, Ali Rezaei-Matehkolaei, Parisa Badiee, Ferry Hagen, Cornelia Lass-Flörl, Eric Dannaoui, Jacques F. Meis, Hamid Badali
Published in: Mycoses, Issue 61/2, 2018, Page(s) 134-142, ISSN 0933-7407
DOI: 10.1111/myc.12716
Author(s): Amir Arastehfar, Farnaz Daneshnia, Mohammad Kord, Maryam Roudbary, Hossein Zarrinfar, Wenjie Fang, Sayed Jamal Hashemi, Mohammad Javad Najafzadeh, Sadegh Khodavaisy, Weihua Pan, Wanqing Liao, Hamid Badali, Sassan Rezaie, Kamiar Zomorodian, Ferry Hagen, Teun Boekhout
Published in: Frontiers in Cellular and Infection Microbiology, Issue 9, 2019, ISSN 2235-2988
DOI: 10.3389/fcimb.2019.00021
Author(s): Amir Arastehfar, Wenjie Fang, Weihua Pan, Michaela Lackner, Wanqing Liao, Parisa Badiee, Kamiar Zomorodian, Hamid Badali, Ferry Hagen, Cornelia Lass-Flörl, Teun Boekhout
Published in: Diagnostic Microbiology and Infectious Disease, Issue 93/2, 2019, Page(s) 112-119, ISSN 0732-8893
DOI: 10.1016/j.diagmicrobio.2018.09.007
Author(s): Amir Arastehfar, Wenjie Fang, Weihua Pan, Wanqing Liao, Liang Yan, Teun Boekhout
Published in: BMC Infectious Diseases, Issue 18/1, 2018, ISSN 1471-2334
DOI: 10.1186/s12879-018-3381-5
Author(s): Amir Arastehfar, Wenjie Fang, Farnaz Daneshnia, Abdullah MS Al-Hatmi, Wanqing Liao, Weihua Pan, Ziauddin Khan, Suhail Ahmad, Katharina Rosam, Michaela Lackner, Cornelia Lass-Flörl, Ferry Hagen, Teun Boekhout
Published in: Future Microbiology, Issue 14/1, 2019, Page(s) 33-45, ISSN 1746-0913
DOI: 10.2217/fmb-2018-0227
Author(s): Amir Arastehfar, Farnaz Daneshnia, Kamiar Zomorodian, Mohammad-Javad Najafzadeh, Sadegh Khodavaisy, Hossein Zarrinfar, Ferry Hagen, Zahra Zare Shahrabadi, Michaela Lackner, Hossein Mirhendi, Mohammadreza Salehi, Maryam Roudbary, Weihua Pan, Markus Kostrzewa, Teun Boekhout
Published in: Antimicrobial Agents and Chemotherapy, 2019, ISSN 0066-4804
DOI: 10.1128/aac.02503-18
Author(s): A Arastehfar, T Boekhout, G Butler, G Buda De Cesare, E Dolk, T Gabaldóln, A Hafez, B Hube, F Hagen, H Hovhannisyan, E Iracane, M Kostrzewa, M Lackner, C Lass-Flörl, C Llorens, V Mixão, C Munro, J Oliveira-Pacheco, M Pekmezovic, A Pérez-Hansen, A Rodriguez Sanchez, F M Sauer, K Sparbier, A A Stavrou, M Vaneechoutte, M Vatanshenassan, Toni Gabaldón
Published in: FEMS Microbiology Reviews, 2019, ISSN 0168-6445
DOI: 10.1093/femsre/fuz015
Author(s): H Hovhannisyan, A Hafez, C Llorens, T Gabaldón
Published in: Bioinformatics, 2019, ISSN 1367-4803
DOI: 10.1093/bioinformatics/btz626
Author(s): Kontxi Martinez de San Vicente, Markus S. Schröder, Lisa Lombardi, Elise Iracane, Geraldine Butler
Published in: "G3: Genes|Genomes|Genetics", 2019, Page(s) g3.400348.2019, ISSN 2160-1836
DOI: 10.1534/g3.119.400348
Author(s): Amir Arastehfar, Farnaz Daneshnia, Mohammad-Reza Salehi, Hossein Zarrinfar, Sadegh Khodavaisy, Pieter-Jan Haas, Maryam Roudbary, Mohammad-Javad Najafzadeh, Kamiar Zomorodian, Arezoo Charsizadeh, Carlo Brouwer, Weihua Pan, Ferry Hagen, Teun Boekhout
Published in: Journal of Medical Microbiology, Issue 68/5, 2019, Page(s) 770-777, ISSN 0022-2615
DOI: 10.1099/jmm.0.000963
Author(s): Amir Arastehfar, Farnaz Daneshnia, Shirin Farahyar, Wenjie Fang, Maryam Salimi, Mohammadreza Salehi, Ferry Hagen, Pan Weihua, Maryam Roudbary, Teun Boekhout
Published in: Journal of Oral Microbiology, Issue 11/1, 2019, Page(s) 1601061, ISSN 2000-2297
DOI: 10.1080/20002297.2019.1601061
Author(s): Amir Arastehfar, Mina Bakhtiari, Farnaz Daneshnia, Wenjie Fang, Sara Khanjari Sadati, Abdullah MS Al-Hatmi, Marizeth Groenewald, Hamid Sharifi-Mehr, Wanqing Liao, Weihua Pan, Kamiar Zomorodian, Ferry Hagen, Teun Boekhout
Published in: Future Microbiology, Issue 14/4, 2019, Page(s) 267-274, ISSN 1746-0913
DOI: 10.2217/fmb-2018-0253
Author(s): Amir Arastehfar, Sadegh Khodavaisy, Farnaz Daneshnia, Mohammad-Javad Najafzadeh, Shahram Mahmoudi, Arezoo Charsizadeh, Mohammad-Reza Salehi, Hossein Zarrinfar, Abbas Raeisabadi, Somayeh Dolatabadi, Zahra Zare Shahrabadi, Kamiar Zomorodian, Weihua Pan, Ferry Hagen, Teun Boekhout
Published in: Frontiers in Cellular and Infection Microbiology, Issue 9, 2019, ISSN 2235-2988
DOI: 10.3389/fcimb.2019.00264
Author(s): Antonio Rodríguez, Brecht Guillemyn, Paul Coucke, Mario Vaneechoutte
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-54608-x
Author(s): Ágnes Jakab, Selene Mogavero, Toni M. Förster, Marina Pekmezovic, Nadja Jablonowski, Viktor Dombrádi, István Pócsi, Bernhard Hube
Published in: Microbiology, Issue 162/12, 2016, Page(s) 2116-2125, ISSN 1350-0872
DOI: 10.1099/mic.0.000383
Author(s): Verónica Mixão, Toni Gabaldón
Published in: Yeast, 2017, ISSN 0749-503X
DOI: 10.1002/yea.3242
Author(s): Hrant Hovhannisyan, Toni Gabaldón
Published in: Current Topics in Microbiology and Immunology, 2018
DOI: 10.1007/82_2018_122