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CORDIS

Research Training Network on Integrated Component Cycling in Epithelial Cell Motility

Resultado final

Sustainability

• Workshop 6: • evaluating need and options for continuation of training and research in the field of cell migration • presenting results to the scientific community and press

Communication

• workshop 5: • discussing results with international experts

PhD theses

• submitting and defending PhD theses

Communication 1

• communicating results in publications and at international meetings

Publicaciones

Unbiased pattern analysis reveals highly diverse responses of cytoskeletal systems to cyclic straining

Autores: Ronald Springer, Alexander Zielinski, Catharina Pleschka, Bernd Hoffmann, Rudolf Merkel
Publicado en: PLOS ONE, Edición 14/3, 2019, Página(s) e0210570, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0210570

Optogenetic Tuning Reveals Rho Amplification-Dependent Dynamics of a Cell Contraction Signal Network

Autores: Dominic Kamps, Johannes Koch, Victor O. Juma, Eduard Campillo-Funollet, Melanie Graessl, Soumya Banerjee, Tomáš Mazel, Xi Chen, Yao-Wen Wu, Stephanie Portet, Anotida Madzvamuse, Perihan Nalbant, Leif Dehmelt
Publicado en: Cell Reports, Edición 33/9, 2020, Página(s) 108467, ISSN 2211-1247
Editor: Cell Press
DOI: 10.1016/j.celrep.2020.108467

A moving grid finite element method applied to a mechanobiochemical model for 3D cell migration

Autores: Laura Murphy, Anotida Madzvamuse
Publicado en: Applied Numerical Mathematics, Edición 158, 2020, Página(s) 336-359, ISSN 0168-9274
Editor: Elsevier BV
DOI: 10.1016/j.apnum.2020.08.004

Integrating Actin and Myosin II in a Viscous Model for Cell Migration

Autores: Anotida Madzvamuse, Benard Kipchumba Kiplangat
Publicado en: Frontiers in Applied Mathematics and Statistics, Edición 6, 2020, ISSN 2297-4687
Editor: Frontiers
DOI: 10.3389/fams.2020.00026

Differential cellular responses to adhesive interactions with galectin-8- and fibronectin-coated substrates

Autores: Wenhong Li, Ana Sancho, Wen-Lu Chung, Yaron Vinik, Jürgen Groll, Yehiel Zick, Ohad Medalia, Alexander D. Bershadsky, Benjamin Geiger
Publicado en: Journal of Cell Science, Edición 134/8, 2021, ISSN 0021-9533
Editor: The Company of Biologists Ltd.
DOI: 10.1242/jcs.252221

Projected Finite Elements for Systems of Reaction-Diffusion Equations on Closed Evolving Spheroidal Surfaces

Autores: Necibe Tuncer, Anotida Madzvamuse
Publicado en: Communications in Computational Physics, Edición 21/3, 2017, Página(s) 718-747, ISSN 1815-2406
Editor: Global Science Press
DOI: 10.4208/cicp.oa-2016-0029

Parameter identification through mode isolation for reaction–diffusion systems on arbitrary geometries

Autores: Laura Murphy, Chandrasekhar Venkataraman, Anotida Madzvamuse
Publicado en: International Journal of Biomathematics, Edición 11/04, 2018, Página(s) 1850053, ISSN 1793-5245
Editor: World Scientific Publishing Co. Pte Ltd
DOI: 10.1142/s1793524518500535

An integrated framework for quantifying immune-tumour interactions in a 3D co-culture model

Autores: Gheed Al-Hity, FengWei Yang, Eduard Campillo-Funollet, Andrew E. Greenstein, Hazel Hunt, Myrthe Mampay, Haya Intabli, Marta Falcinelli, Anotida Madzvamuse, Chandrasekhar Venkataraman, Melanie S. Flint
Publicado en: Communications Biology, Edición 4/1, 2021, ISSN 2399-3642
Editor: Springer Nature
DOI: 10.1038/s42003-021-02296-7

Advanced 2D/3D cell migration assay for faster evaluation of chemotaxis of slow-moving cells

Autores: Lea Tomasova, Zeno Guttenberg, Bernd Hoffmann, Rudolf Merkel
Publicado en: PLOS ONE, Edición 14/7, 2019, Página(s) e0219708, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0219708

Preventing inflammation inhibits biopsy-mediated changes in tumor cell behavior

Autores: Maria Alieva, Andreia S. Margarido, Tamara Wieles, Erik R. Abels, Burcin Colak, Carla Boquetale, Herke Jan Noordmans, Tom J. Snijders, Marike L. Broekman, Jacco van Rheenen
Publicado en: Scientific Reports, Edición 7/1, 2017, Página(s) 7529, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-017-07660-4

Lumped finite elements for reaction–cross-diffusion systems on stationary surfaces

Autores: Massimo Frittelli, Anotida Madzvamuse, Ivonne Sgura, Chandrasekhar Venkataraman
Publicado en: Computers & Mathematics with Applications, Edición 74/12, 2017, Página(s) 3008-3023, ISSN 0898-1221
Editor: Pergamon Press Ltd.
DOI: 10.1016/j.camwa.2017.07.044

Bulk-surface virtual element method for systems of PDEs in two-space dimensions

Autores: Massimo Frittelli, Anotida Madzvamuse, Ivonne Sgura
Publicado en: Numerische Mathematik, Edición 147/2, 2021, Página(s) 305-348, ISSN 0029-599X
Editor: Springer Verlag
DOI: 10.1007/s00211-020-01167-3

Stability Analysis and Parameter Classification of a Reaction-Diffusion Model on an Annulus

Autores: Wakil Sarfaraz, Anotida Madzvamuse
Publicado en: Journal of Applied Nonlinear Dynamics, Edición 9/4, 2020, Página(s) 589-617, ISSN 2164-6457
Editor: L&H Scientific Publishing
DOI: 10.5890/jand.2020.12.006

Classification of parameter spaces for a reaction-diffusion model on stationary domains

Autores: Wakil Sarfaraz, Anotida Madzvamuse
Publicado en: Chaos, Solitons & Fractals, Edición 103, 2017, Página(s) 33-51, ISSN 0960-0779
Editor: Pergamon Press Ltd.
DOI: 10.1016/j.chaos.2017.05.032

Transition of responsive mechanosensitive elements from focal adhesions to adherens junctions on epithelial differentiation

Autores: Barbara Noethel, Lena Ramms, Georg Dreissen, Marco Hoffmann, Ronald Springer, Matthias Rübsam, Wolfgang H. Ziegler, Carien M. Niessen, Rudolf Merkel, Bernd Hoffmann
Publicado en: Molecular Biology of the Cell, Edición 29/19, 2018, Página(s) 2317-2325, ISSN 1059-1524
Editor: American Society for Cell Biology
DOI: 10.1091/mbc.e17-06-0387

Nanoscale Topography and Poroelastic Properties of Model Tissue Breast Gland Basement Membranes

Autores: Gloria Fabris, Alessandro Lucantonio, Nico Hampe, Erik Noetzel, Bernd Hoffmann, Antonio DeSimone, Rudolf Merkel
Publicado en: Biophysical Journal, Edición 115/9, 2018, Página(s) 1770-1782, ISSN 0006-3495
Editor: Biophysical Society
DOI: 10.1016/j.bpj.2018.09.020

A Hybrid Multiscale Model for Cancer Invasion of the Extracellular Matrix

Autores: Nikolaos Sfakianakis, Anotida Madzvamuse, Mark A. J. Chaplain
Publicado en: Multiscale Modeling & Simulation, Edición 18/2, 2020, Página(s) 824-850, ISSN 1540-3459
Editor: Society for Industrial and Applied Mathematics
DOI: 10.1137/18m1189026

An excitable Rho GTPase signaling network generates dynamic subcellular contraction patterns

Autores: Melanie Graessl, Johannes Koch, Abram Calderon, Dominic Kamps, Soumya Banerjee, Tomáš Mazel, Nina Schulze, Jana Kathrin Jungkurth, Rutuja Patwardhan, Djamschid Solouk, Nico Hampe, Bernd Hoffmann, Leif Dehmelt, Perihan Nalbant
Publicado en: The Journal of Cell Biology, Edición 216/12, 2017, Página(s) 4271-4285, ISSN 0021-9525
Editor: Rockefeller University Press
DOI: 10.1083/jcb.201706052

A note on how to develop interdisciplinary collaborations between experimentalists and theoreticians

Autores: Anotida Madzvamuse, Sharon R. Lubkin
Publicado en: Interface Focus, Edición 6/5, 2016, Página(s) 20160069, ISSN 2042-8898
Editor: Royal Society Publishing
DOI: 10.1098/rsfs.2016.0069

Effects of Plectin Depletion on Keratin Network Dynamics and Organization

Autores: Marcin Moch, Reinhard Windoffer, Nicole Schwarz, Raphaela Pohl, Andreas Omenzetter, Uwe Schnakenberg, Fabian Herb, Kraisorn Chaisaowong, Dorit Merhof, Lena Ramms, Gloria Fabris, Bernd Hoffmann, Rudolf Merkel, Rudolf E. Leube
Publicado en: PLOS ONE, Edición 11/3, 2016, Página(s) e0149106, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0149106

The bulk-surface finite element method for reaction–diffusion systems on stationary volumes

Autores: Anotida Madzvamuse, Andy H.W. Chung
Publicado en: Finite Elements in Analysis and Design, Edición 108, 2016, Página(s) 9-21, ISSN 0168-874X
Editor: Elsevier BV
DOI: 10.1016/j.finel.2015.09.002

Stability analysis of reaction-diffusion models on evolving domains: The effects of cross-diffusion

Autores: Anotida Madzvamuse, Hussaini Ndakwo, Raquel Barreira
Publicado en: Discrete and Continuous Dynamical Systems, Edición 36/4, 2016, Página(s) 2133-2170, ISSN 1078-0947
Editor: Dept. of Mathematics, Southwest Missouri State University
DOI: 10.3934/dcds.2016.36.2133

A coupled bulk-surface model for cell polarisation

Autores: D. Cusseddu, L. Edelstein-Keshet, J.A. Mackenzie, S. Portet, A. Madzvamuse
Publicado en: Journal of Theoretical Biology, 2018, ISSN 0022-5193
Editor: Academic Press
DOI: 10.1016/j.jtbi.2018.09.008

Wnt ligands influence tumour initiation by controlling the number of intestinal stem cells

Autores: D. J. Huels, L. Bruens, M. C. Hodder, P. Cammareri, A. D. Campbell, R. A. Ridgway, D. M. Gay, M. Solar-Abboud, W. J. Faller, C. Nixon, L. B. Zeiger, M. E. McLaughlin, E. Morrissey, D. J. Winton, H. J. Snippert, J. van Rheenen, O. J. Sansom
Publicado en: Nature Communications, Edición 9/1, 2018, Página(s) Article number 1132, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-018-03426-2

Potential impact of invasive surgical procedures on primary tumor growth and metastasis

Autores: Maria Alieva, Jacco van Rheenen, Marike L. D. Broekman
Publicado en: Clinical & Experimental Metastasis, Edición 35/4, 2018, Página(s) 319-331, ISSN 0262-0898
Editor: Kluwer Academic Publishers
DOI: 10.1007/s10585-018-9896-8

Domain-growth-induced patterning for reaction-diffusion systems with linear cross-diffusion

Autores: Anotida Madzvamuse, Raquel Barreira
Publicado en: Discrete & Continuous Dynamical Systems - B, Edición 22/11, 2017, Página(s) 1-27, ISSN 1531-3492
Editor: American Institute of Mathematical Sciences
DOI: 10.3934/dcdsb.2018163

Intracellular Motility of Intermediate Filaments

Autores: Rudolf E. Leube, Marcin Moch, Reinhard Windoffer
Publicado en: Cold Spring Harbor Perspectives in Biology, Edición 9/6, 2017, Página(s) a021980, ISSN 1943-0264
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/cshperspect.a021980

A mathematical understanding of how cytoplasmic dynein walks on microtubules

Autores: L. Trott, M. Hafezparast, A. Madzvamuse
Publicado en: Royal Society Open Science, Edición 5/8, 2018, Página(s) 171568, ISSN 2054-5703
Editor: Royal Society
DOI: 10.1098/rsos.171568

Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains

Autores: Eduard Campillo-Funollet, Chandrasekhar Venkataraman, Anotida Madzvamuse
Publicado en: Bulletin of Mathematical Biology, 2018, Página(s) 1-24, ISSN 0092-8240
Editor: Academic Press
DOI: 10.1007/s11538-018-0518-z

Numerical Preservation of Velocity Induced Invariant Regions for Reaction–Diffusion Systems on Evolving Surfaces

Autores: Massimo Frittelli, Anotida Madzvamuse, Ivonne Sgura, Chandrasekhar Venkataraman
Publicado en: Journal of Scientific Computing, Edición 77/2, 2018, Página(s) 971-1000, ISSN 0885-7474
Editor: Kluwer Academic/Plenum Publishers
DOI: 10.1007/s10915-018-0741-7

A Model for Selection of Eyespots on Butterfly Wings

Autores: Toshio Sekimura, Chandrasekhar Venkataraman, Anotida Madzvamuse
Publicado en: PLOS ONE, Edición 10/11, 2015, Página(s) e0141434, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0141434

Intermediate Filaments as Organizers of Cellular Space: How They Affect Mitochondrial Structure and Function

Autores: Nicole Schwarz, Rudolf Leube
Publicado en: Cells, Edición 5/3, 2016, Página(s) 30, ISSN 2073-4409
Editor: MDPI AG
DOI: 10.3390/cells5030030

Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles

Autores: Sander C Steenbeek, Thang V Pham, Joep de Ligt, Anoek Zomer, Jaco C Knol, Sander R Piersma, Tim Schelfhorst, Rick Huisjes, Raymond M Schiffelers, Edwin Cuppen, Connie R Jimenez, Jacco van Rheenen
Publicado en: The EMBO Journal, Edición 37/15, 2018, Página(s) e98357, ISSN 0261-4189
Editor: Nature Publishing Group
DOI: 10.15252/embj.201798357

A surgical orthotopic organoid transplantation approach in mice to visualize and study colorectal cancer progression

Autores: Arianna Fumagalli, Saskia J E Suijkerbuijk, Harry Begthel, Evelyne Beerling, Koen C Oost, Hugo J Snippert, Jacco van Rheenen, Jarno Drost
Publicado en: Nature Protocols, Edición 13/2, 2018, Página(s) 235-247, ISSN 1754-2189
Editor: Nature Publishing Group
DOI: 10.1038/nprot.2017.137

Two Interlinked Bistable Switches Govern Mitotic Control in Mammalian Cells

Autores: Scott Rata, Maria F. Suarez Peredo Rodriguez, Stephy Joseph, Nisha Peter, Fabio Echegaray Iturra, Fengwei Yang, Anotida Madzvamuse, Jan G. Ruppert, Kumiko Samejima, Melpomeni Platani, Monica Alvarez-Fernandez, Marcos Malumbres, William C. Earnshaw, Bela Novak, Helfrid Hochegger
Publicado en: Current Biology, Edición 28/23, 2018, Página(s) 3824-3832.e6, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2018.09.059

A Modular and Affordable Time-Lapse Imaging and Incubation System Based on 3D-Printed Parts, a Smartphone, and Off-The-Shelf Electronics

Autores: Rodrigo Hernández Vera, Emil Schwan, Nikos Fatsis-Kavalopoulos, Johan Kreuger
Publicado en: PLOS ONE, Edición 11/12, 2016, Página(s) e0167583, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0167583

Analysis and Simulations of Coupled Bulk-surface Reaction-Diffusion Systems on Exponentially Evolving Volumes

Autores: A. Madzvamuse, A. H. Chung
Publicado en: Mathematical Modelling of Natural Phenomena, Edición 11/5, 2016, Página(s) 4-32, ISSN 1760-6101
Editor: EDP Sciences
DOI: 10.1051/mmnp/201611502

A computational framework for particle and whole cell tracking applied to a real biological dataset

Autores: Feng Wei Yang, Chandrasekhar Venkataraman, Vanessa Styles, Verena Kuttenberger, Elias Horn, Zeno von Guttenberg, Anotida Madzvamuse
Publicado en: Journal of Biomechanics, Edición February 2016, 2016, ISSN 0021-9290
Editor: Elsevier BV
DOI: 10.1016/j.jbiomech.2016.02.008

From good to bad: Intravital imaging of the hijack of physiological processes by cancer cells

Autores: Saskia J.E. Suijkerbuijk, Jacco van Rheenen
Publicado en: Developmental Biology, Edición 428/2, 2017, Página(s) 328-337, ISSN 0012-1606
Editor: Academic Press
DOI: 10.1016/j.ydbio.2017.04.015

Domain-Dependent Stability Analysis of a Reaction–Diffusion Model on Compact Circular Geometries

Autores: Wakil Sarfaraz, Anotida Madzvamuse
Publicado en: International Journal of Bifurcation and Chaos, Edición 28/08, 2018, Página(s) 1830024, ISSN 0218-1274
Editor: World Scientific Publishing Co
DOI: 10.1142/s0218127418300240

Scratch-induced partial skin wounds re-epithelialize by sheets of independently migrating keratinocytes

Autores: Laura Bornes, Reinhard Windoffer, Rudolf E Leube, Jessica Morgner, Jacco van Rheenen
Publicado en: Life Science Alliance, Edición 4/1, 2020, Página(s) e202000765, ISSN 2575-1077
Editor: National Library of Medicine
DOI: 10.26508/lsa.202000765

Cell migration through three-dimensional confining pores: speed accelerations by deformation and recoil of the nucleus

Autores: Marina Krause, Feng Wei Yang, Mariska te Lindert, Philipp Isermann, Jan Schepens, Ralph J. A. Maas, Chandrasekhar Venkataraman, Jan Lammerding, Anotida Madzvamuse, Wiljan Hendriks, Joost te Riet, Katarina Wolf
Publicado en: Philosophical Transactions of the Royal Society B: Biological Sciences, Edición 374/1779, 2019, Página(s) 20180225, ISSN 0962-8436
Editor: Royal Society of London
DOI: 10.1098/rstb.2018.0225

A Robust and Efficient Adaptive Multigrid Solver for the Optimal Control of Phase Field Formulations of Geometric Evolution Laws

Autores: Feng Wei Yang, Chandrasekhar Venkataraman, Vanessa Styles, Anotida Madzvamuse
Publicado en: Communications in Computational Physics, Edición 21/1, 2017, Página(s) 65-92, ISSN 1815-2406
Editor: Global Science Press
DOI: 10.4208/cicp.240715.080716a

Investigating Optimal Time Step Intervals of Imaging for Data Quality through a Novel Fully-Automated Cell Tracking Approach

Autores: Feng Wei Yang, Lea Tomášová, Zeno v. Guttenberg, Ke Chen, Anotida Madzvamuse
Publicado en: Journal of Imaging, Edición 6/7, 2020, Página(s) 66, ISSN 2313-433X
Editor: Multidisciplinary Digital Publishing Institute
DOI: 10.3390/jimaging6070066

Intravital imaging of glioma border morphology reveals distinctive cellular dynamics and contribution to tumor cell invasion

Autores: Maria Alieva, Verena Leidgens, Markus J. Riemenschneider, Christoph A. Klein, Peter Hau, Jacco van Rheenen
Publicado en: Scientific Reports, Edición 9/1, 2019, Página(s) 2054, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-019-38625-4

High Accuracy Benchmark Problems for Allen-Cahn and Cahn-Hilliard Dynamics

Autores: Jon Matteo Church
Publicado en: Communications in Computational Physics, Edición 26/4, 2019, Página(s) 947-972, ISSN 1815-2406
Editor: Global Science Press
DOI: 10.4208/cicp.oa-2019-0006

Role of Rho GTPase networks in Keratinocyte migration

Autores: Rutuja Patwardhan
Publicado en: 2020
Editor: Universität Duisburg-Essen

Advanced migration assays for studying chemotaxis of slow moving cells

Autores: Tomášová, Lea
Publicado en: 2021
Editor: Rheinische Friedrich-Wilhelms-Universität Bonn

Impact of keratin network regulation on migrating cells

Autores: Anne PORA
Publicado en: 2018
Editor: Rheinisch-Westfaelische Technische Hochschule Aachen

POLARIZED EPITHELIAL CELL MIGRATION DEPENDS ON REAR END STRESS FIBER TENSION

Autores: Galiya Sakaeva, Dmytro Kotsur, Kritika Sahni, Georg Dreissen, Julian Mattes, Bernd Hoffmann, Rudolf Merkel
Publicado en: 3rd International Symposium on Mechanobiology, Edición 2017, 2017
Editor: Mechanobiology Institute Singapore

MIGRATION COMPONENT DYNAMICS AND FRONT-REAR INTERPLAY

Autores: Kritika Sahni, Dmytro Kotsur, Georg Dreissen, Dr. Julian Mattes, Dr. Bernd Hoffmann, Prof. Dr. Rudolf Merkel, Galiya Sakaeva
Publicado en: 3rd International Symposium on Mechanobiology, Edición 2017, 2017
Editor: Mechanobiology Institute Singapore

Analysis of variable-order interacting multiple model algorithms for cell tracking

Autores: K. Lomanov, J. Martinez del Rincon, P. Miller & H. Gribben
Publicado en: Proceedings of the 18th Irish Machine Vision and Image Processing conference, Edición Yearly, 2016, Página(s) 35-42, ISBN 978-0-9934207-1-9
Editor: Irish Pattern Recognition and Classification Society

Cross-diffusion in reaction-diffusion models: analysis, numerics and applications

Autores: Anotida Madzvamuse, Raquel Barreira, Alf Gerisch
Publicado en: Progress in Industrial Mathematics at ECMI 2016, Edición 26, 2018, Página(s) 385-392, ISBN 978-3-319-63081-6
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-63082-3_61

LAP-based tracking for focal adhesions

Autores: Katerina Lomanov, Jesus Martinez del Rincon, Paul Miller, Hugh Gribben
Publicado en: Irish Machine Vision and Image Processing Conference Proceedings 2018: Proceedings, Edición Yearly, 2018
Editor: The Irish Pattern Recognition & Classification Society

An algorithm for individual intermediate filament tracking

Autores: Dmytro Kotsur, Roman Yakobenchuk, Rudolf Leube, Reinhard Windoffer, Julian Mattes
Publicado en: SAMBA: SIPAIM - MICCAI BIOMEDICAL WORKSHOP, 2019
Editor: MICCAI Society Board

Active contour models for individual keratin filament tracking

Autores: Dmytro Kotsur, Rudolf Leube, Reinhard Windoffer, Julian Mattes
Publicado en: Proceedings of the OAGM&ARW Joint Workshop: Vision, Automation and Robotics, Edición May, 2017, 2017, Página(s) 109-110, ISBN 978-3-85125-524-9
Editor: Verlag der Technischen Universität
DOI: 10.3217/978-3-85125-524-9-19

CSI-Krebs: So findet man die passende Therapie

Autores: Martin Rümmele
Publicado en: medianet Dossier - health economy, Edición 10/2018, 2018, Página(s) 4-5
Editor: medianet Verlag GmbH

Derechos de propiedad intelectual

Intermediate Filament Tracking (IFTracking)The software is licensed under the GNU GPL v.3 License.

Número de solicitud/publicación: https:// github.com/SCCH-KVS/IFTracking
Fecha: 2018-11-01
Solicitante(s): SOFTWARE COMPETENCE CENTER HAGENBERG GMBH

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