Research Training Network on Integrated Component Cycling in Epithelial Cell Motility

Unbiased pattern analysis reveals highly diverse responses of cytoskeletal systems to cyclic straining

Autori: Ronald Springer, Alexander Zielinski, Catharina Pleschka, Bernd Hoffmann, Rudolf Merkel
Pubblicato in: PLOS ONE, Numero 14/3, 2019, Pagina/e e0210570, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0210570

Optogenetic Tuning Reveals Rho Amplification-Dependent Dynamics of a Cell Contraction Signal Network

Autori: Dominic Kamps, Johannes Koch, Victor O. Juma, Eduard Campillo-Funollet, Melanie Graessl, Soumya Banerjee, Tomáš Mazel, Xi Chen, Yao-Wen Wu, Stephanie Portet, Anotida Madzvamuse, Perihan Nalbant, Leif Dehmelt
Pubblicato in: Cell Reports, Numero 33/9, 2020, Pagina/e 108467, ISSN 2211-1247
Editore: Cell Press
DOI: 10.1016/j.celrep.2020.108467

A moving grid finite element method applied to a mechanobiochemical model for 3D cell migration

Autori: Laura Murphy, Anotida Madzvamuse
Pubblicato in: Applied Numerical Mathematics, Numero 158, 2020, Pagina/e 336-359, ISSN 0168-9274
Editore: Elsevier BV
DOI: 10.1016/j.apnum.2020.08.004

Integrating Actin and Myosin II in a Viscous Model for Cell Migration

Autori: Anotida Madzvamuse, Benard Kipchumba Kiplangat
Pubblicato in: Frontiers in Applied Mathematics and Statistics, Numero 6, 2020, ISSN 2297-4687
Editore: Frontiers
DOI: 10.3389/fams.2020.00026

Differential cellular responses to adhesive interactions with galectin-8- and fibronectin-coated substrates

Autori: Wenhong Li, Ana Sancho, Wen-Lu Chung, Yaron Vinik, Jürgen Groll, Yehiel Zick, Ohad Medalia, Alexander D. Bershadsky, Benjamin Geiger
Pubblicato in: Journal of Cell Science, Numero 134/8, 2021, ISSN 0021-9533
Editore: The Company of Biologists Ltd.
DOI: 10.1242/jcs.252221

Projected Finite Elements for Systems of Reaction-Diffusion Equations on Closed Evolving Spheroidal Surfaces

Autori: Necibe Tuncer, Anotida Madzvamuse
Pubblicato in: Communications in Computational Physics, Numero 21/3, 2017, Pagina/e 718-747, ISSN 1815-2406
Editore: Global Science Press
DOI: 10.4208/cicp.oa-2016-0029

Parameter identification through mode isolation for reaction–diffusion systems on arbitrary geometries

Autori: Laura Murphy, Chandrasekhar Venkataraman, Anotida Madzvamuse
Pubblicato in: International Journal of Biomathematics, Numero 11/04, 2018, Pagina/e 1850053, ISSN 1793-5245
Editore: World Scientific Publishing Co. Pte Ltd
DOI: 10.1142/s1793524518500535

An integrated framework for quantifying immune-tumour interactions in a 3D co-culture model

Autori: Gheed Al-Hity, FengWei Yang, Eduard Campillo-Funollet, Andrew E. Greenstein, Hazel Hunt, Myrthe Mampay, Haya Intabli, Marta Falcinelli, Anotida Madzvamuse, Chandrasekhar Venkataraman, Melanie S. Flint
Pubblicato in: Communications Biology, Numero 4/1, 2021, ISSN 2399-3642
Editore: Springer Nature
DOI: 10.1038/s42003-021-02296-7

Advanced 2D/3D cell migration assay for faster evaluation of chemotaxis of slow-moving cells

Autori: Lea Tomasova, Zeno Guttenberg, Bernd Hoffmann, Rudolf Merkel
Pubblicato in: PLOS ONE, Numero 14/7, 2019, Pagina/e e0219708, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0219708

Preventing inflammation inhibits biopsy-mediated changes in tumor cell behavior

Autori: Maria Alieva, Andreia S. Margarido, Tamara Wieles, Erik R. Abels, Burcin Colak, Carla Boquetale, Herke Jan Noordmans, Tom J. Snijders, Marike L. Broekman, Jacco van Rheenen
Pubblicato in: Scientific Reports, Numero 7/1, 2017, Pagina/e 7529, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-017-07660-4

Lumped finite elements for reaction–cross-diffusion systems on stationary surfaces

Autori: Massimo Frittelli, Anotida Madzvamuse, Ivonne Sgura, Chandrasekhar Venkataraman
Pubblicato in: Computers & Mathematics with Applications, Numero 74/12, 2017, Pagina/e 3008-3023, ISSN 0898-1221
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.camwa.2017.07.044

Bulk-surface virtual element method for systems of PDEs in two-space dimensions

Autori: Massimo Frittelli, Anotida Madzvamuse, Ivonne Sgura
Pubblicato in: Numerische Mathematik, Numero 147/2, 2021, Pagina/e 305-348, ISSN 0029-599X
Editore: Springer Verlag
DOI: 10.1007/s00211-020-01167-3

Stability Analysis and Parameter Classification of a Reaction-Diffusion Model on an Annulus

Autori: Wakil Sarfaraz, Anotida Madzvamuse
Pubblicato in: Journal of Applied Nonlinear Dynamics, Numero 9/4, 2020, Pagina/e 589-617, ISSN 2164-6457
Editore: L&H Scientific Publishing
DOI: 10.5890/jand.2020.12.006

Classification of parameter spaces for a reaction-diffusion model on stationary domains

Autori: Wakil Sarfaraz, Anotida Madzvamuse
Pubblicato in: Chaos, Solitons & Fractals, Numero 103, 2017, Pagina/e 33-51, ISSN 0960-0779
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.chaos.2017.05.032

Transition of responsive mechanosensitive elements from focal adhesions to adherens junctions on epithelial differentiation

Autori: Barbara Noethel, Lena Ramms, Georg Dreissen, Marco Hoffmann, Ronald Springer, Matthias Rübsam, Wolfgang H. Ziegler, Carien M. Niessen, Rudolf Merkel, Bernd Hoffmann
Pubblicato in: Molecular Biology of the Cell, Numero 29/19, 2018, Pagina/e 2317-2325, ISSN 1059-1524
Editore: American Society for Cell Biology
DOI: 10.1091/mbc.e17-06-0387

Nanoscale Topography and Poroelastic Properties of Model Tissue Breast Gland Basement Membranes

Autori: Gloria Fabris, Alessandro Lucantonio, Nico Hampe, Erik Noetzel, Bernd Hoffmann, Antonio DeSimone, Rudolf Merkel
Pubblicato in: Biophysical Journal, Numero 115/9, 2018, Pagina/e 1770-1782, ISSN 0006-3495
Editore: Biophysical Society
DOI: 10.1016/j.bpj.2018.09.020

A Hybrid Multiscale Model for Cancer Invasion of the Extracellular Matrix

Autori: Nikolaos Sfakianakis, Anotida Madzvamuse, Mark A. J. Chaplain
Pubblicato in: Multiscale Modeling & Simulation, Numero 18/2, 2020, Pagina/e 824-850, ISSN 1540-3459
Editore: Society for Industrial and Applied Mathematics
DOI: 10.1137/18m1189026

An excitable Rho GTPase signaling network generates dynamic subcellular contraction patterns

Autori: Melanie Graessl, Johannes Koch, Abram Calderon, Dominic Kamps, Soumya Banerjee, Tomáš Mazel, Nina Schulze, Jana Kathrin Jungkurth, Rutuja Patwardhan, Djamschid Solouk, Nico Hampe, Bernd Hoffmann, Leif Dehmelt, Perihan Nalbant
Pubblicato in: The Journal of Cell Biology, Numero 216/12, 2017, Pagina/e 4271-4285, ISSN 0021-9525
Editore: Rockefeller University Press
DOI: 10.1083/jcb.201706052

A note on how to develop interdisciplinary collaborations between experimentalists and theoreticians

Autori: Anotida Madzvamuse, Sharon R. Lubkin
Pubblicato in: Interface Focus, Numero 6/5, 2016, Pagina/e 20160069, ISSN 2042-8898
Editore: Royal Society Publishing
DOI: 10.1098/rsfs.2016.0069

Effects of Plectin Depletion on Keratin Network Dynamics and Organization

Autori: Marcin Moch, Reinhard Windoffer, Nicole Schwarz, Raphaela Pohl, Andreas Omenzetter, Uwe Schnakenberg, Fabian Herb, Kraisorn Chaisaowong, Dorit Merhof, Lena Ramms, Gloria Fabris, Bernd Hoffmann, Rudolf Merkel, Rudolf E. Leube
Pubblicato in: PLOS ONE, Numero 11/3, 2016, Pagina/e e0149106, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0149106

The bulk-surface finite element method for reaction–diffusion systems on stationary volumes

Autori: Anotida Madzvamuse, Andy H.W. Chung
Pubblicato in: Finite Elements in Analysis and Design, Numero 108, 2016, Pagina/e 9-21, ISSN 0168-874X
Editore: Elsevier BV
DOI: 10.1016/j.finel.2015.09.002

Stability analysis of reaction-diffusion models on evolving domains: The effects of cross-diffusion

Autori: Anotida Madzvamuse, Hussaini Ndakwo, Raquel Barreira
Pubblicato in: Discrete and Continuous Dynamical Systems, Numero 36/4, 2016, Pagina/e 2133-2170, ISSN 1078-0947
Editore: Dept. of Mathematics, Southwest Missouri State University
DOI: 10.3934/dcds.2016.36.2133

A coupled bulk-surface model for cell polarisation

Autori: D. Cusseddu, L. Edelstein-Keshet, J.A. Mackenzie, S. Portet, A. Madzvamuse
Pubblicato in: Journal of Theoretical Biology, 2018, ISSN 0022-5193
Editore: Academic Press
DOI: 10.1016/j.jtbi.2018.09.008

Wnt ligands influence tumour initiation by controlling the number of intestinal stem cells

Autori: D. J. Huels, L. Bruens, M. C. Hodder, P. Cammareri, A. D. Campbell, R. A. Ridgway, D. M. Gay, M. Solar-Abboud, W. J. Faller, C. Nixon, L. B. Zeiger, M. E. McLaughlin, E. Morrissey, D. J. Winton, H. J. Snippert, J. van Rheenen, O. J. Sansom
Pubblicato in: Nature Communications, Numero 9/1, 2018, Pagina/e Article number 1132, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-018-03426-2

Potential impact of invasive surgical procedures on primary tumor growth and metastasis

Autori: Maria Alieva, Jacco van Rheenen, Marike L. D. Broekman
Pubblicato in: Clinical & Experimental Metastasis, Numero 35/4, 2018, Pagina/e 319-331, ISSN 0262-0898
Editore: Kluwer Academic Publishers
DOI: 10.1007/s10585-018-9896-8

Domain-growth-induced patterning for reaction-diffusion systems with linear cross-diffusion

Autori: Anotida Madzvamuse, Raquel Barreira
Pubblicato in: Discrete & Continuous Dynamical Systems - B, Numero 22/11, 2017, Pagina/e 1-27, ISSN 1531-3492
Editore: American Institute of Mathematical Sciences
DOI: 10.3934/dcdsb.2018163

Intracellular Motility of Intermediate Filaments

Autori: Rudolf E. Leube, Marcin Moch, Reinhard Windoffer
Pubblicato in: Cold Spring Harbor Perspectives in Biology, Numero 9/6, 2017, Pagina/e a021980, ISSN 1943-0264
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/cshperspect.a021980

A mathematical understanding of how cytoplasmic dynein walks on microtubules

Autori: L. Trott, M. Hafezparast, A. Madzvamuse
Pubblicato in: Royal Society Open Science, Numero 5/8, 2018, Pagina/e 171568, ISSN 2054-5703
Editore: Royal Society
DOI: 10.1098/rsos.171568

Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains

Autori: Eduard Campillo-Funollet, Chandrasekhar Venkataraman, Anotida Madzvamuse
Pubblicato in: Bulletin of Mathematical Biology, 2018, Pagina/e 1-24, ISSN 0092-8240
Editore: Academic Press
DOI: 10.1007/s11538-018-0518-z

Numerical Preservation of Velocity Induced Invariant Regions for Reaction–Diffusion Systems on Evolving Surfaces

Autori: Massimo Frittelli, Anotida Madzvamuse, Ivonne Sgura, Chandrasekhar Venkataraman
Pubblicato in: Journal of Scientific Computing, Numero 77/2, 2018, Pagina/e 971-1000, ISSN 0885-7474
Editore: Kluwer Academic/Plenum Publishers
DOI: 10.1007/s10915-018-0741-7

A Model for Selection of Eyespots on Butterfly Wings

Autori: Toshio Sekimura, Chandrasekhar Venkataraman, Anotida Madzvamuse
Pubblicato in: PLOS ONE, Numero 10/11, 2015, Pagina/e e0141434, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0141434

Intermediate Filaments as Organizers of Cellular Space: How They Affect Mitochondrial Structure and Function

Autori: Nicole Schwarz, Rudolf Leube
Pubblicato in: Cells, Numero 5/3, 2016, Pagina/e 30, ISSN 2073-4409
Editore: MDPI AG
DOI: 10.3390/cells5030030

Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles

Autori: Sander C Steenbeek, Thang V Pham, Joep de Ligt, Anoek Zomer, Jaco C Knol, Sander R Piersma, Tim Schelfhorst, Rick Huisjes, Raymond M Schiffelers, Edwin Cuppen, Connie R Jimenez, Jacco van Rheenen
Pubblicato in: The EMBO Journal, Numero 37/15, 2018, Pagina/e e98357, ISSN 0261-4189
Editore: Nature Publishing Group
DOI: 10.15252/embj.201798357

A surgical orthotopic organoid transplantation approach in mice to visualize and study colorectal cancer progression

Autori: Arianna Fumagalli, Saskia J E Suijkerbuijk, Harry Begthel, Evelyne Beerling, Koen C Oost, Hugo J Snippert, Jacco van Rheenen, Jarno Drost
Pubblicato in: Nature Protocols, Numero 13/2, 2018, Pagina/e 235-247, ISSN 1754-2189
Editore: Nature Publishing Group
DOI: 10.1038/nprot.2017.137

Two Interlinked Bistable Switches Govern Mitotic Control in Mammalian Cells

Autori: Scott Rata, Maria F. Suarez Peredo Rodriguez, Stephy Joseph, Nisha Peter, Fabio Echegaray Iturra, Fengwei Yang, Anotida Madzvamuse, Jan G. Ruppert, Kumiko Samejima, Melpomeni Platani, Monica Alvarez-Fernandez, Marcos Malumbres, William C. Earnshaw, Bela Novak, Helfrid Hochegger
Pubblicato in: Current Biology, Numero 28/23, 2018, Pagina/e 3824-3832.e6, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2018.09.059

A Modular and Affordable Time-Lapse Imaging and Incubation System Based on 3D-Printed Parts, a Smartphone, and Off-The-Shelf Electronics

Autori: Rodrigo Hernández Vera, Emil Schwan, Nikos Fatsis-Kavalopoulos, Johan Kreuger
Pubblicato in: PLOS ONE, Numero 11/12, 2016, Pagina/e e0167583, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0167583

Analysis and Simulations of Coupled Bulk-surface Reaction-Diffusion Systems on Exponentially Evolving Volumes

Autori: A. Madzvamuse, A. H. Chung
Pubblicato in: Mathematical Modelling of Natural Phenomena, Numero 11/5, 2016, Pagina/e 4-32, ISSN 1760-6101
Editore: EDP Sciences
DOI: 10.1051/mmnp/201611502

A computational framework for particle and whole cell tracking applied to a real biological dataset

Autori: Feng Wei Yang, Chandrasekhar Venkataraman, Vanessa Styles, Verena Kuttenberger, Elias Horn, Zeno von Guttenberg, Anotida Madzvamuse
Pubblicato in: Journal of Biomechanics, Numero February 2016, 2016, ISSN 0021-9290
Editore: Elsevier BV
DOI: 10.1016/j.jbiomech.2016.02.008

From good to bad: Intravital imaging of the hijack of physiological processes by cancer cells

Autori: Saskia J.E. Suijkerbuijk, Jacco van Rheenen
Pubblicato in: Developmental Biology, Numero 428/2, 2017, Pagina/e 328-337, ISSN 0012-1606
Editore: Academic Press
DOI: 10.1016/j.ydbio.2017.04.015

Domain-Dependent Stability Analysis of a Reaction–Diffusion Model on Compact Circular Geometries

Autori: Wakil Sarfaraz, Anotida Madzvamuse
Pubblicato in: International Journal of Bifurcation and Chaos, Numero 28/08, 2018, Pagina/e 1830024, ISSN 0218-1274
Editore: World Scientific Publishing Co
DOI: 10.1142/s0218127418300240

Scratch-induced partial skin wounds re-epithelialize by sheets of independently migrating keratinocytes

Autori: Laura Bornes, Reinhard Windoffer, Rudolf E Leube, Jessica Morgner, Jacco van Rheenen
Pubblicato in: Life Science Alliance, Numero 4/1, 2020, Pagina/e e202000765, ISSN 2575-1077
Editore: National Library of Medicine
DOI: 10.26508/lsa.202000765

Cell migration through three-dimensional confining pores: speed accelerations by deformation and recoil of the nucleus

Autori: Marina Krause, Feng Wei Yang, Mariska te Lindert, Philipp Isermann, Jan Schepens, Ralph J. A. Maas, Chandrasekhar Venkataraman, Jan Lammerding, Anotida Madzvamuse, Wiljan Hendriks, Joost te Riet, Katarina Wolf
Pubblicato in: Philosophical Transactions of the Royal Society B: Biological Sciences, Numero 374/1779, 2019, Pagina/e 20180225, ISSN 0962-8436
Editore: Royal Society of London
DOI: 10.1098/rstb.2018.0225

A Robust and Efficient Adaptive Multigrid Solver for the Optimal Control of Phase Field Formulations of Geometric Evolution Laws

Autori: Feng Wei Yang, Chandrasekhar Venkataraman, Vanessa Styles, Anotida Madzvamuse
Pubblicato in: Communications in Computational Physics, Numero 21/1, 2017, Pagina/e 65-92, ISSN 1815-2406
Editore: Global Science Press
DOI: 10.4208/cicp.240715.080716a

Investigating Optimal Time Step Intervals of Imaging for Data Quality through a Novel Fully-Automated Cell Tracking Approach

Autori: Feng Wei Yang, Lea Tomášová, Zeno v. Guttenberg, Ke Chen, Anotida Madzvamuse
Pubblicato in: Journal of Imaging, Numero 6/7, 2020, Pagina/e 66, ISSN 2313-433X
Editore: Multidisciplinary Digital Publishing Institute
DOI: 10.3390/jimaging6070066

Intravital imaging of glioma border morphology reveals distinctive cellular dynamics and contribution to tumor cell invasion

Autori: Maria Alieva, Verena Leidgens, Markus J. Riemenschneider, Christoph A. Klein, Peter Hau, Jacco van Rheenen
Pubblicato in: Scientific Reports, Numero 9/1, 2019, Pagina/e 2054, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-019-38625-4

High Accuracy Benchmark Problems for Allen-Cahn and Cahn-Hilliard Dynamics

Autori: Jon Matteo Church
Pubblicato in: Communications in Computational Physics, Numero 26/4, 2019, Pagina/e 947-972, ISSN 1815-2406
Editore: Global Science Press
DOI: 10.4208/cicp.oa-2019-0006

Role of Rho GTPase networks in Keratinocyte migration

Autori: Rutuja Patwardhan
Pubblicato in: 2020
Editore: Universität Duisburg-Essen

Advanced migration assays for studying chemotaxis of slow moving cells

Autori: Tomášová, Lea
Pubblicato in: 2021
Editore: Rheinische Friedrich-Wilhelms-Universität Bonn

Impact of keratin network regulation on migrating cells

Autori: Anne PORA
Pubblicato in: 2018
Editore: Rheinisch-Westfaelische Technische Hochschule Aachen

POLARIZED EPITHELIAL CELL MIGRATION DEPENDS ON REAR END STRESS FIBER TENSION

Autori: Galiya Sakaeva, Dmytro Kotsur, Kritika Sahni, Georg Dreissen, Julian Mattes, Bernd Hoffmann, Rudolf Merkel
Pubblicato in: 3rd International Symposium on Mechanobiology, Numero 2017, 2017
Editore: Mechanobiology Institute Singapore

MIGRATION COMPONENT DYNAMICS AND FRONT-REAR INTERPLAY

Autori: Kritika Sahni, Dmytro Kotsur, Georg Dreissen, Dr. Julian Mattes, Dr. Bernd Hoffmann, Prof. Dr. Rudolf Merkel, Galiya Sakaeva
Pubblicato in: 3rd International Symposium on Mechanobiology, Numero 2017, 2017
Editore: Mechanobiology Institute Singapore

Analysis of variable-order interacting multiple model algorithms for cell tracking

Autori: K. Lomanov, J. Martinez del Rincon, P. Miller & H. Gribben
Pubblicato in: Proceedings of the 18th Irish Machine Vision and Image Processing conference, Numero Yearly, 2016, Pagina/e 35-42, ISBN 978-0-9934207-1-9
Editore: Irish Pattern Recognition and Classification Society

Cross-diffusion in reaction-diffusion models: analysis, numerics and applications

Autori: Anotida Madzvamuse, Raquel Barreira, Alf Gerisch
Pubblicato in: Progress in Industrial Mathematics at ECMI 2016, Numero 26, 2018, Pagina/e 385-392, ISBN 978-3-319-63081-6
Editore: Springer International Publishing
DOI: 10.1007/978-3-319-63082-3_61

LAP-based tracking for focal adhesions

Autori: Katerina Lomanov, Jesus Martinez del Rincon, Paul Miller, Hugh Gribben
Pubblicato in: Irish Machine Vision and Image Processing Conference Proceedings 2018: Proceedings, Numero Yearly, 2018
Editore: The Irish Pattern Recognition & Classification Society

An algorithm for individual intermediate filament tracking

Autori: Dmytro Kotsur, Roman Yakobenchuk, Rudolf Leube, Reinhard Windoffer, Julian Mattes
Pubblicato in: SAMBA: SIPAIM - MICCAI BIOMEDICAL WORKSHOP, 2019
Editore: MICCAI Society Board

Active contour models for individual keratin filament tracking

Autori: Dmytro Kotsur, Rudolf Leube, Reinhard Windoffer, Julian Mattes
Pubblicato in: Proceedings of the OAGM&ARW Joint Workshop: Vision, Automation and Robotics, Numero May, 2017, 2017, Pagina/e 109-110, ISBN 978-3-85125-524-9
Editore: Verlag der Technischen Universität
DOI: 10.3217/978-3-85125-524-9-19

CSI-Krebs: So findet man die passende Therapie

Autori: Martin Rümmele
Pubblicato in: medianet Dossier - health economy, Numero 10/2018, 2018, Pagina/e 4-5
Editore: medianet Verlag GmbH

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