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Systematic discovery of functional elements in RNA virus genomes: an Encyclopedia of RNA Virus Elements

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Publications

Complete genome sequences of two insect-specific flaviviruses

Author(s): Jermilia Charles, Chandra S. Tangudu, Andrew E. Firth, Bradley J. Blitvich
Published in: Archives of Virology, Issue 162/12, 2017, Page(s) 3913-3917, ISSN 0304-8608
DOI: 10.1007/s00705-017-3552-5

ASXL gain-of-function truncation mutants: defective and dysregulated forms of a natural ribosomal frameshifting product?

Author(s): Adam M. Dinan, John F. Atkins, Andrew E. Firth
Published in: Biology Direct, Issue 12/1, 2017, ISSN 1745-6150
DOI: 10.1186/s13062-017-0195-0

A Review of Flaviviruses that Have No Known Arthropod Vector

Author(s): Bradley Blitvich, Andrew Firth
Published in: Viruses, Issue 9/6, 2017, Page(s) 154, ISSN 1999-4915
DOI: 10.3390/v9060154

Avoidance of reporter assay distortions from fused dual reporters

Author(s): Gary Loughran, Michael T. Howard, Andrew E. Firth, John F. Atkins
Published in: RNA, Issue 23/8, 2017, Page(s) 1285-1289, ISSN 1355-8382
DOI: 10.1261/rna.061051.117

Ribosome profiling of the retrovirus murine leukemia virus

Author(s): Nerea Irigoyen, Adam M. Dinan, Ian Brierley, Andrew E. Firth
Published in: Retrovirology, Issue 15/1, 2018, ISSN 1742-4690
DOI: 10.1186/s12977-018-0394-5

Protein-directed ribosomal frameshifting temporally regulates gene expression

Author(s): Sawsan Napthine, Roger Ling, Leanne K. Finch, Joshua D. Jones, Susanne Bell, Ian Brierley, Andrew E. Firth
Published in: Nature Communications, Issue 8, 2017, Page(s) 15582, ISSN 2041-1723
DOI: 10.1038/ncomms15582

An analysis by metabolic labelling of the encephalomyocarditis virus ribosomal frameshifting efficiency and stimulators

Author(s): Roger Ling, Andrew E. Firth
Published in: Journal of General Virology, Issue 98/8, 2017, Page(s) 2100-2105, ISSN 0022-1317
DOI: 10.1099/jgv.0.000888

Polycipiviridae: a proposed new family of polycistronic picorna-like RNA viruses

Author(s): Ingrida Olendraite, Nina I. Lukhovitskaya, Sanford D. Porter, Steven M. Valles, Andrew E. Firth
Published in: Journal of General Virology, Issue 98/9, 2017, Page(s) 2368-2378, ISSN 0022-1317
DOI: 10.1099/jgv.0.000902

Transcriptional and Translational Landscape of Equine Torovirus

Author(s): Hazel Stewart, Katherine Brown, Adam M. Dinan, Nerea Irigoyen, Eric J. Snijder, Andrew E. Firth
Published in: Journal of Virology, Issue 92/17, 2018, ISSN 0022-538X
DOI: 10.1128/JVI.00589-18

Isolation and characterization of Nylanderia fulva virus 1, a positive-sense, single-stranded RNA virus infecting the tawny crazy ant, Nylanderia fulva

Author(s): Steven M. Valles, David H. Oi, James J. Becnel, James K. Wetterer, John S. LaPolla, Andrew E. Firth
Published in: Virology, Issue 496, 2016, Page(s) 244-254, ISSN 0042-6822
DOI: 10.1016/j.virol.2016.06.014

Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use

Author(s): John F. Atkins, Gary Loughran, Pramod R. Bhatt, Andrew E. Firth, Pavel V. Baranov
Published in: Nucleic Acids Research, 2016, Page(s) gkw530, ISSN 0305-1048
DOI: 10.1093/nar/gkw530

High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling

Author(s): Nerea Irigoyen, Andrew E. Firth, Joshua D. Jones, Betty Y.-W. Chung, Stuart G. Siddell, Ian Brierley
Published in: PLOS Pathogens, Issue 12/2, 2016, Page(s) e1005473, ISSN 1553-7374
DOI: 10.1371/journal.ppat.1005473

Mutational analysis of the Potyviridae transcriptional slippage site utilized for expression of the P3N-PIPO and P1N-PISPO proteins

Author(s): Allan Olspert, John P. Carr, Andrew E. Firth
Published in: Nucleic Acids Research, Issue 44/16, 2016, Page(s) 7618-7629, ISSN 0305-1048
DOI: 10.1093/nar/gkw441