Evolution of viral codon usage preferences:manipulation of translation accuracy and evasion of immune response

Project Information

CODOVIREVOL

Grant agreement ID: 647916

DOI

10.3030/647916

Project closed

EC signature date 9 December 2015

Start date 1 January 2016

End date 30 June 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 997 100,00

EU contribution

€ 1 997 100,00

Coordinated by

CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
France

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Other (6)

The multi-level phenotypic impact of synonymous substitutions: heterologous gene expression in human cells

Author(s): Marion A.L. Picard, Fiona Leblay, Cécile Cassan, Anouk Willemsen, Josquin Daron, Frédérique Bauffe, Mathilde Decourcelle, Antonin Demange, Ignacio G. Bravo
Published in: biorxiv, 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.01.07.475042

Human cellular homeostasis buffers trans-acting translational effects of heterologous gene expression with very different codon usage bias

Author(s): Arthur J Jallet, Antonin Demange, Fiona Leblay, Mathilde Decourcelle, Khadija El Koulali, Marion AL Picard, Ignacio G Bravo
Published in: biorxiv, 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.12.09.471957

Genome plasticity in Papillomaviruses and de novo emergence of E5 oncogenes

Author(s): Marta Félez-Sánchez, Anouk Willemsen, Ignacio Bravo
Published in: biorxiv, 2018
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/337477

Macroecology suggests cancer-causing papillomaviruses form non-neutral communities

Author(s): Marta Felez-Sanchez, Carmen Lia Murall, Ignacio G. Bravo
Published in: biorxiv, 2017
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/187047

Ecological opportunity, radiation events and genomic innovations shaped the episodic evolutionary history of papillomaviruses

Author(s): Anouk Willemsen, Ignacio G. Bravo
Published in: biorxiv, 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2020.03.08.982421

Subfunctionalisation of paralogous genes and evolution of differential codon usage preferences: the showcase of polypyrimidine tract binding proteins

Author(s): Jérôme Bourret, Fanni Borvető, Ignacio G. Bravo
Published in: biorxiv, 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2020.08.30.274191

Peer reviewed articles (11)

Origin and evolution of papillomavirus (onco)genes and genomes

Author(s): Anouk Willemsen, Ignacio G. Bravo
Published in: Philos Trans R Soc Lond B Biol Sci ., 2019, ISSN 1471-2970
Publisher: The Royal Society Publishing
DOI: 10.1098/rstb.2018.0303

COUSIN (COdon Usage Similarity INdex): A Normalized Measure of Codon Usage Preferences

Author(s): Jérôme Bourret, Samuel Alizon, Ignacio G Bravo
Published in: Genome Biology and Evolution, 2019, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1101/600361

Why Human Papillomavirus Acute Infections Matter

Author(s): Samuel Alizon, Carmen Murall, Ignacio Bravo
Published in: Viruses, Issue 9/10, 2017, Page(s) 293, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v9100293

Genome Sequences of Two Novel Papillomaviruses Isolated from Healthy Skin of Pudu puda and Cervus elaphus Deer

Author(s): Beatriz Mengual-Chuliá, Ulrich Wittstatt, Philipp Olias, Ignacio G. Bravo
Published in: Genome Announcements, Issue 6/18, 2018, ISSN 2169-8287
Publisher: American Society for Microbiology
DOI: 10.1128/genomeA.00298-18

Two Novel, Distantly Related Papillomaviruses Isolated from Healthy Skin of the Timor Deer ( Rusa timorensis )

Author(s): Beatriz Mengual-Chuliá, Gudrun Wibbelt, Marc Gottschling, Ignacio G. Bravo
Published in: Genome Announcements, Issue 6/24, 2018, ISSN 2169-8287
Publisher: American Society for Microbiology
DOI: 10.1128/genomeA.00505-18

Evolutionary Changes after Translational Challenges imposed by Horizontal Gene Transfer

Author(s): Stéphanie Bedhomme, Dolors Amorós-Moya, Luz M Valero, Nùria Bonifaci, Miquel-Àngel Pujana, Ignacio G Bravo
Published in: Genome Biology and Evolution, 2019, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evz031

Transmission between Archaic and Modern Human Ancestors during the Evolution of the Oncogenic Human Papillomavirus 16

Author(s): Ville N. Pimenoff, Cristina Mendes de Oliveira, Ignacio G. Bravo
Published in: Molecular Biology and Evolution, Issue 34/1, 2017, Page(s) 4-19, ISSN 0737-4038
Publisher: Oxford University Press
DOI: 10.1093/molbev/msw214

Plasmid and clonal interference during post horizontal gene transfer evolution

Author(s): S. Bedhomme, D. Perez Pantoja, I. G. Bravo
Published in: Molecular Ecology, Issue 26/7, 2017, Page(s) 1832-1847, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.14056

Genome Plasticity in Papillomaviruses and De Novo Emergence of E5 Oncogenes

Author(s): Anouk Willemsen, Marta Félez-Sánchez, Ignacio G Bravo
Published in: Genome Biology and Evolution, 2019, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evz095

Papillomaviruses infecting cetaceans exhibit signs of genome adaptation following a recombination event

Author(s): Fanni Borvető, Ignacio G Bravo, Anouk Willemsen
Published in: Virus Evolution, 2020, ISSN 2057-1577
Publisher: Oxford Academic
DOI: 10.1093/ve/veaa038

Variability in Codon Usage in Coronaviruses Is Mainly Driven by Mutational Bias and Selective Constraints on CpG Dinucleotide

Author(s): Josquin Daron, Ignacio G. Bravo
Published in: Viruses, 2021, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13091800