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Synthetic Cell Biology: Designing organelle transport mechanisms

Project description

Engineering synthetic vesicles in living cells

Cells contain a complex network of membrane-bound organelles and vesicles that mediate the synthesis, processing and transport of macromolecules such as proteins and lipids destined for secretion or for use within the cell. This network plays a crucial role in various cellular processes, including the secretion of hormones and the maintenance of cellular homeostasis. Funded by the European Research Council, the ArtifiCell project focuses on the concept of designing new vesicle transport mechanisms in living cells. Researchers propose to engineer the core protein machinery involved in vesicle formation, targeting and fusion. They will do this by introducing synthetic phospholipid-based vesicles and peptide-nucleic acids to redirect secretory vesicles to specific targets.

Objective

Imagine being able to design into living cells and organisms de novo vesicle transport mechanisms that do not naturally exist? At one level this is a wild-eyed notion of synthetic biology.
But we contend that this vision can be approached even today, focusing first on the process of exocytosis, a fundamental process that impacts almost every area of physiology. Enough has now been learned about the natural core machinery (as recognized by the award of the 2013 Nobel Prize in Physiology or Medicine to the PI and others) to take highly innovative physics/engineering- and DNA-based approaches to design synthetic versions of the secretory apparatus that could someday open new avenues in genetic medicine.
The central idea is to introduce DNA-based functional equivalents of the core protein machinery that naturally form (coats), target (tethers), and fuse (SNAREs) vesicles. We have already taken first steps by using DNA origami-based templates to produce synthetic phospholipid vesicles and complementary DNA-based tethers to specifically capture these DNA-templated vesicles on targeted bilayers. Others have linked DNA oligonucleotides to trigger vesicle fusion.
The next and much more challenging step is to introduce such processes into living cells. We hope to break this barrier, and in the process start a new field of research into “synthetic exocytosis”, by introducing Peptide-Nucleic Acids (PNAs) of tethers and SNAREs to re-direct naturally-produced secretory vesicles to artificially-programmed targets and provide artificially-programmed regulation. PNAs are chosen mainly because they lack the negatively charged phosphate backbones of DNA, and therefore are more readily delivered into the cell across the plasma membrane. Future steps, would include producing the transport vesicles synthetically within the cell by externally supplied origami-based PNA or similar cages, and - much more speculatively - ultimately using encoded DNA and RNAs to provide these functions.

Host institution

UNIVERSITY COLLEGE LONDON
Net EU contribution
€ 2 200 000,00
Address
GOWER STREET
WC1E 6BT London
United Kingdom

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Region
London Inner London — West Camden and City of London
Activity type
Higher or Secondary Education Establishments
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Total cost
€ 2 200 000,00

Beneficiaries (2)