Bioinformatics and Information Retrieval Data Structures Analysis and Design

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Integration report

Integration report.

Final report of WP4

Final report of WP4, including a survey on the literature previous to this project, advances done and source code of new algorithms and data structures designed during the lifetime of the project for network analysis.

Quality management plan
Benchmark and test report

Benchmark and test report.

Kick-Off Meeting documentation
Final report of WP6

Final dissemination report including all demonstration activities, publications, reports on workshops and summer schools, teaching material, brochures, etc., involved in this working package

Final report of WP2

Final report of WP2, including a survey on the literature previous to this project, advances done and source code of new algorithms and data structures designed during the lifetime of the project for sequence analysis.

Final report of WP3

Final report of WP3, including a survey on the literature previous to this project, advances done and source code of new algorithms and data structures designed during the lifetime of the project for compression and indexing repetitive data.

Prototypes WP5

Prototypes of integrated research.

Publicaciones

Run Compressed Rank/Select for Large Alphabets

Autores: Jose Fuentes-Sepulveda, Juha Karkkainen, Dmitry Kosolobov, Simon Puglisi
Publicado en: 2018 Data Compression Conference, 2018, Página(s) 315-324, ISBN 978-1-5386-4883-4
Editor: IEEE
DOI: 10.1109/dcc.2018.00040

Exploiting Computation-Friendly Graph Compression Methods for Adjacency-Matrix Multiplication

Autores: Alexandre Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro
Publicado en: 2018 Data Compression Conference, 2018, Página(s) 307-314, ISBN 978-1-5386-4883-4
Editor: IEEE
DOI: 10.1109/dcc.2018.00039

Navigational Rule Derivation: an Algorithm to Determine the Effect of Traffic Signs on Road Networks

Autores: Daniil Galaktionov, Miguel R. Luaces, Ángeles S. Places
Publicado en: Proceeding of the 20th Pacific Asia Conference on Information Systems, Edición PACIS 2016, 2016, Página(s) Paper 94, ISBN 9789-860491029
Editor: Association for Information Systems. AIS Electronic Library (AISeL)

A New Method to Index and Store Spatio-Temporal Data

Autores: Guillermo de Bernardo, Ramón Casares, Adrián Gómez-Brandón, José R. Paramá
Publicado en: Proceeding of the 20th Pacific Asia Conference on Information Systems, Edición PACIS 2016, 2016, Página(s) Paper 93, ISBN 9789-860491029
Editor: Association for Information Systems. AIS Electronic Library (AISeL)

Two-Dimensional Block Trees

Autores: Nieves R. Brisaboa, Travis Gagie, Adrian Gomez-Brandon, Gonzalo Navarro
Publicado en: 2018 Data Compression Conference, 2018, Página(s) 227-236, ISBN 978-1-5386-4883-4
Editor: IEEE
DOI: 10.1109/dcc.2018.00031

Compact Representations of Event Sequences

Autores: Nieves R. Brisaboa, Guillermo de Bernardo, Gonzalo Navarro, Tirso V. Rodeiro, Diego Seco
Publicado en: 2018 Data Compression Conference, 2018, Página(s) 237-246, ISBN 978-1-5386-4883-4
Editor: IEEE
DOI: 10.1109/dcc.2018.00032

About BIRDS project (Bioinformatics and Information Retrieval Data Structures Analysis and Design)

Autores: Guillermo de Bernardo, Susana Ladra
Publicado en: Proceedings of the 5th Spanish Conference on Information Retrieval - CERI '18, 2018, Página(s) 1-4, ISBN 9781-450365437
Editor: ACM Press
DOI: 10.1145/3230599.3230602

Non-Overlapping Indexing - Cache Obliviously

Autores: Sahar Hooshmand, Paniz Abedin, M. Oguzhan Külekci, Sharma V. Thankachan
Publicado en: Annual Symposium on Combinatorial Pattern Matching (CPM 2018), 2018, Página(s) 8:1--8:9, ISBN 978-3-95977-074-3
Editor: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik
DOI: 10.4230/lipics.cpm.2018.8

Integrating the common variability language with multilanguage annotations for web engineering

Autores: Jose-Miguel Horcas, Alejandro Cortiñas, Lidia Fuentes, Miguel R. Luaces
Publicado en: Proceeedings of the 22nd International Conference on Systems and Software Product Line - SPLC '18, 2018, Página(s) 196-207, ISBN 9781-450364645
Editor: ACM Press
DOI: 10.1145/3233027.3233049

On the Hardness and Inapproximability of Recognizing Wheeler Graphs

Autores: Daniel Gibney, Sharma V. Thankachan
Publicado en: 27th Annual European Symposium on Algorithms (ESA 2019), 2019, Página(s) 51:1--51:16
Editor: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik
DOI: 10.4230/lipics.esa.2019.51

Parallel Optimization of Fiber Bundle Segmentation for Massive Tractography Datasets

Autores: Andrea Vazquez, Narciso Lopez-Lopez, Nicole Labra, Miguel Figueroa, Cyril Poupon, Jean-Francois Mangin, Cecilia Hernandez, Pamela Guevara
Publicado en: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019, Página(s) 178-181, ISBN 978-1-5386-3641-1
Editor: IEEE
DOI: 10.1109/isbi.2019.8759208

Simulating the DNA Overlap Graph in Succinct Space

Autores: Diego Díaz-Domínguez, Travis Gagie, Gonzalo Navarro
Publicado en: 30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019), 2019, Página(s) 26:1--26:20
Editor: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik
DOI: 10.4230/lipics.cpm.2019.26

A Compact Representation of Raster Time Series

Autores: Nataly Cruces, Diego Seco, Gilberto Guiterrez
Publicado en: 2019 Data Compression Conference (DCC), 2019, Página(s) 103-111, ISBN 978-1-7281-0657-1
Editor: IEEE
DOI: 10.1109/dcc.2019.00018

Dv2v: A Dynamic Variable-to-Variable Compressor

Autores: Nieves R. Brisaboa, Antonio Farina, Adrian Gomez-Brandon, Gonzalo Navarro, Tirso V. Rodeiro
Publicado en: 2019 Data Compression Conference (DCC), 2019, Página(s) 83-92, ISBN 978-1-7281-0657-1
Editor: IEEE
DOI: 10.1109/dcc.2019.00016

Tunneling on Wheeler Graphs

Autores: Jarno Alanko, Travis Gagie, Gonzalo Navarro, Louisa Seelbach Benkner
Publicado en: 2019 Data Compression Conference (DCC), 2019, Página(s) 122-131, ISBN 978-1-7281-0657-1
Editor: IEEE
DOI: 10.1109/dcc.2019.00020

Improved Compressed String Dictionaries

Autores: Nieves R. Brisaboa, Ana Cerdeira-Pena, Guillermo de Bernardo, Gonzalo Navarro
Publicado en: Proceedings of the 28th ACM International Conference on Information and Knowledge Management - CIKM '19, 2019, Página(s) 29-38, ISBN 9781-450369763
Editor: ACM Press
DOI: 10.1145/3357384.3357972

Order-Preserving Pattern Matching Indeterminate Strings

Autores: Rui Henriques, Alexandre P. Francisco, Luís M. S. Russo, Hideo Bannai
Publicado en: Annual Symposium on Combinatorial Pattern Matching (CPM 2018), Edición 2:1--2:15, 2018
Editor: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik
DOI: 10.4230/lipics.cpm.2018.2

Cortical surface parcellation based on intra-subject white matter fiber clustering

Autores: Narciso Lopez-Lopez, Andrea Vazquez, Cyril Poupon, Jean-Francois Mangin, Pamela Guevara
Publicado en: 2019 IEEE CHILEAN Conference on Electrical, Electronics Engineering, Information and Communication Technologies (CHILECON), 2019, Página(s) 1-6, ISBN 978-1-7281-3185-6
Editor: IEEE
DOI: 10.1109/chilecon47746.2019.8988066

Bitvectors with runs and the successor/predecessor problem

Autores: Adrián Gómez-Brandón
Publicado en: 2020 Data Compression Conference, 2020
Editor: IEEE

Revisiting compact RDF stores based on k2-trees

Autores: Nieves R. Brisaboa, Ana Cerdeira-Pena, Guillermo de Bernardo, Antonio Fariña
Publicado en: 2020 Data Compression Conference, 2020
Editor: IEEE

On dynamic succinct graph representations

Autores: Miguel E. Coimbra, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro
Publicado en: 2020 Data Compression Conference, 2020
Editor: IEEE

Semantrix: A Compressed Semantic Matrix

Autores: Nieves R. Brisaboa, Antonio Fariña, Gonzalo Navarro, Tirso V. Rodeiro
Publicado en: 2020 Data Compression Conference, 2020
Editor: IEEE

Approximating Optimal Bidirectional Macro Schemes

Autores: Luís M. S. Russo, Ana D. Correia, Gonzalo Navarro, Alexandre P. Francisco
Publicado en: 2020 Data Compression Conference, 2020
Editor: IEEE

Pivot Selection for Median String Problem

Autores: Pedro Mirabal, Jose Abreu, Oscar Pedreira
Publicado en: 2019 38th International Conference of the Chilean Computer Science Society (SCCC), 2019, Página(s) 1-5, ISBN 978-1-7281-5613-2
Editor: IEEE
DOI: 10.1109/sccc49216.2019.8966441

Efficient Compression and Indexing of Trajectories

Autores: Nieves R. Brisaboa, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá
Publicado en: Procs. of 24th International Symposium on String Processing and Information Retrieval, Edición SPIRE 2017, 2017, Página(s) 103-115, ISBN 978-3-319-67427-8
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-67428-5_10

Fast and Compact Planar Embeddings

Autores: Leo Ferres, José Fuentes, Travis Gagie, Meng He, Gonzalo Navarro
Publicado en: Algorithms and Data Structures Symposium, Edición WADS 2017, 2017, Página(s) 385-396, ISBN 978-3-319-62126-5
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-62127-2_33

Optimal Omnitig Listing for Safe and Complete Contig Assembly

Autores: Massimo Cairo, Paul Medvedev, Nidia Obscura Acosta, Romeo Rizzi, Alexandru Tomescu
Publicado en: Procs. 28th Annual Symposium on Combinatorial Pattern Matching, Edición CPM 2017, 2017, Página(s) 29:1--29:12, ISBN 978-3-95977-039-2
Editor: Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik
DOI: 10.4230/LIPIcs.CPM.2017.29

Parallel construction of wavelet trees on multicore architectures

Autores: José Fuentes-Sepúlveda, Erick Elejalde, Leo Ferres, Diego Seco
Publicado en: Knowledge and Information Systems, 2016, ISSN 0219-1377
Editor: Springer Verlag
DOI: 10.1007/s10115-016-1000-6

Aggregated 2D range queries on clustered points

Autores: Nieves R. Brisaboa, Guillermo De Bernardo, Roberto Konow, Gonzalo Navarro, Diego Seco
Publicado en: Information Systems, Edición 60, 2016, Página(s) 34-49, ISSN 0306-4379
Editor: Elsevier Science & Technology
DOI: 10.1016/j.is.2016.03.004

Universal indexes for highly repetitive document collections

Autores: Francisco Claude, Antonio Fariña, Miguel A. Martínez-Prieto, Gonzalo Navarro
Publicado en: Information Systems, Edición 61, 2016, Página(s) 1-23, ISSN 0306-4379
Editor: Elsevier Science & Technology
DOI: 10.1016/j.is.2016.04.002

Linking and Cutting Spanning Trees

Autores: Luís M. S. Russo, Andreia Teixeira, Alexandre Francisco
Publicado en: Algorithms, Edición 11/4, 2018, Página(s) 53, ISSN 1999-4893
Editor: MDPI Open Access Publishing
DOI: 10.3390/a11040053

A compact representation for trips over networks built on self-indexes

Autores: Nieves R. Brisaboa, Antonio Fariña, Daniil Galaktionov, M. Andrea Rodriguez
Publicado en: Information Systems, Edición 78, 2018, Página(s) 1-22, ISSN 0306-4379
Editor: Elsevier Science & Technology
DOI: 10.1016/j.is.2018.06.010

Using Compressed Suffix-Arrays for a compact representation of temporal-graphs

Autores: Nieves R. Brisaboa, Diego Caro, Antonio Fariña, M. Andrea Rodriguez
Publicado en: Information Sciences, Edición 465, 2018, Página(s) 459-483, ISSN 0020-0255
Editor: Elsevier BV
DOI: 10.1016/j.ins.2018.07.023

Design of Mutation Operators for Testing Geographic Information Systems

Autores: Suilen H. Alvarado
Publicado en: Proceedings, Edición 21/1, 2019, Página(s) 43, ISSN 2504-3900
Editor: MDPI
DOI: 10.3390/proceedings2019021043

Cell cycle and protein complex dynamics in discovering signaling pathways

Autores: Daniel Inostroza, Cecilia Hernández, Diego Seco, Gonzalo Navarro, Alvaro Olivera-Nappa
Publicado en: Journal of Bioinformatics and Computational Biology, Edición 17/03, 2019, Página(s) 1950011, ISSN 0219-7200
Editor: Imperial College Press
DOI: 10.1142/s0219720019500112

A study on splay trees

Autores: Luís M.S. Russo
Publicado en: Theoretical Computer Science, Edición 776, 2019, Página(s) 1-18, ISSN 0304-3975
Editor: Elsevier BV
DOI: 10.1016/j.tcs.2018.12.020

On the reproducibility of experiments of indexing repetitive document collections

Autores: Antonio Fariña, Miguel A. Martínez-Prieto, Francisco Claude, Gonzalo Navarro, Juan J. Lastra-Díaz, Nicola Prezza, Diego Seco
Publicado en: Information Systems, Edición 83, 2019, Página(s) 181-194, ISSN 0306-4379
Editor: Elsevier Science & Technology
DOI: 10.1016/j.is.2019.03.007

GraCT: A Grammar-based Compressed Index for Trajectory Data

Autores: Nieves R. Brisaboa, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá
Publicado en: Information Sciences, Edición 483, 2019, Página(s) 106-135, ISSN 0020-0255
Editor: Elsevier BV
DOI: 10.1016/j.ins.2019.01.035

Compact and efficient representation of general graph databases

Autores: Sandra Álvarez-García, Borja Freire, Susana Ladra, Óscar Pedreira
Publicado en: Knowledge and Information Systems, Edición 60/3, 2019, Página(s) 1479-1510, ISSN 0219-1377
Editor: Springer Verlag
DOI: 10.1007/s10115-018-1275-x

Energy Consumption in Compact Integer Vectors: A Study Case

Autores: Jose Fuentes-Sepulveda, Susana Ladra
Publicado en: IEEE Access, Edición 7, 2019, Página(s) 155625-155636, ISSN 2169-3536
Editor: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/ACCESS.2019.2949655

Assessing the best edit in perturbation-based iterative refinement algorithms to compute the median string

Autores: P. Mirabal, J. Abreu, D. Seco
Publicado en: Pattern Recognition Letters, Edición 120, 2019, Página(s) 104-111, ISSN 0167-8655
Editor: Elsevier BV
DOI: 10.1016/j.patrec.2019.02.004

Efficient processing of raster and vector data

Autores: Fernando Silva-Coira, José R. Paramá, Susana Ladra, Juan R. López, Gilberto Gutiérrez
Publicado en: PLOS ONE, Edición 15/1, 2020, Página(s) e0226943, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0226943

Document retrieval on repetitive string collections

Autores: Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén
Publicado en: Information Retrieval Journal, Edición 20/3, 2017, Página(s) 253-291, ISSN 1386-4564
Editor: Kluwer Academic Publishers
DOI: 10.1007/s10791-017-9297-7

A succinct data structure for self-indexing ternary relations

Autores: Sandra Alvarez-Garcia, Guillermo de Bernardo, Nieves R. Brisaboa, Gonzalo Navarro
Publicado en: Journal of Discrete Algorithms, Edición 43, 2017, Página(s) 38-53, ISSN 1570-8667
Editor: Elsevier BV
DOI: 10.1016/j.jda.2016.10.002

Grammar compressed sequences with rank/select support

Autores: Alberto Ordóñez, Gonzalo Navarro, Nieves R. Brisaboa
Publicado en: Journal of Discrete Algorithms, Edición 43, 2017, Página(s) 54-71, ISSN 1570-8667
Editor: Elsevier BV
DOI: 10.1016/j.jda.2016.10.001

Compressed representation of dynamic binary relations with applications

Autores: Nieves R. Brisaboa, Ana Cerdeira-Pena, Guillermo de Bernardo, Gonzalo Navarro
Publicado en: Information Systems, Edición 69, 2017, Página(s) 106-123, ISSN 0306-4379
Editor: Elsevier Science & Technology
DOI: 10.1016/j.is.2017.05.003

Compact Trip Representation over Networks

Autores: Nieves R. Brisaboa, Antonio Fariña, Daniil Galaktionov, M. Andrea Rodríguez
Publicado en: String Processing and Information Retrieval, 2016, Página(s) 240-253, ISBN 978-3-319-46049-9
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-46049-9_23

Efficient Representation of Multidimensional Data over Hierarchical Domains

Autores: Nieves R. Brisaboa, Ana Cerdeira-Pena, Narciso López-López, Gonzalo Navarro, Miguel R. Penabad, Fernando Silva-Coira
Publicado en: String Processing and Information Retrieval, 2016, Página(s) 191-203, ISBN 978-3-319-46049-9
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-46049-9_19

GraCT: A Grammar Based Compressed Representation of Trajectories

Autores: Nieves R. Brisaboa, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá
Publicado en: String Processing and Information Retrieval, 2016, Página(s) 218-230, ISBN 978-3-319-46049-9
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-46049-9_21

Efficient and Compact Representations of Some Non-canonical Prefix-Free Codes

Autores: Antonio Fariña, Travis Gagie, Giovanni Manzini, Gonzalo Navarro, Alberto Ordóñez
Publicado en: String Processing and Information Retrieval, 2016, Página(s) 50-60, ISBN 978-3-319-46049-9
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-46049-9_5

A Case Study on Visualizing Large Spatial Datasets in a Web-Based Map Viewer

Autores: Alejandro Cortiñas, Miguel R. Luaces, Tirso V. Rodeiro
Publicado en: Web Engineering, Edición 10845, 2018, Página(s) 296-303, ISBN 978-3-319-91661-3
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-91662-0_23

Faster and Smaller Two-Level Index for Network-Based Trajectories

Autores: Rodrigo Rivera, M. Andrea Rodríguez, Diego Seco
Publicado en: String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018, Lima, Peru, October 9-11, 2018, Proceedings, Edición 11147, 2018, Página(s) 348-362, ISBN 978-3-030-00478-1
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-00479-8_28

Towards a Compact Representation of Temporal Rasters

Autores: Ana Cerdeira-Pena, Guillermo de Bernardo, Antonio Fariña, José Ramón Paramá, Fernando Silva-Coira
Publicado en: String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018, Lima, Peru, October 9-11, 2018, Proceedings, Edición 11147, 2018, Página(s) 117-130, ISBN 978-3-030-00478-1
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-00479-8_10

3DGraCT: A Grammar-Based Compressed Representation of 3D Trajectories

Autores: Nieves R. Brisaboa, Adrián Gómez-Brandón, Miguel A. Martínez-Prieto, José Ramón Paramá
Publicado en: String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018, Lima, Peru, October 9-11, 2018, Proceedings, Edición 11147, 2018, Página(s) 102-116, ISBN 978-3-030-00478-1
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-00479-8_9

New Structures to Solve Aggregated Queries for Trips over Public Transportation Networks

Autores: Nieves R. Brisaboa, Antonio Fariña, Daniil Galaktionov, Tirso V. Rodeiro, M. Andrea Rodríguez
Publicado en: String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018, Lima, Peru, October 9-11, 2018, Proceedings, Edición 11147, 2018, Página(s) 88-101, ISBN 978-3-030-00478-1
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-00479-8_8

Faster Dynamic Compressed d-ary Relations

Autores: Diego Arroyuelo, Guillermo de Bernardo, Travis Gagie, Gonzalo Navarro
Publicado en: String Processing and Information Retrieval - 26th International Symposium, SPIRE 2019, Segovia, Spain, October 7–9, 2019, Proceedings, Edición 11811, 2019, Página(s) 419-433, ISBN 978-3-030-32685-2
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-32686-9_30

Space- and Time-Efficient Storage of LiDAR Point Clouds

Autores: Susana Ladra, Miguel R. Luaces, José R. Paramá, Fernando Silva-Coira
Publicado en: String Processing and Information Retrieval - 26th International Symposium, SPIRE 2019, Segovia, Spain, October 7–9, 2019, Proceedings, Edición 11811, 2019, Página(s) 513-527, ISBN 978-3-030-32685-2
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-32686-9_36

Implementing the Topological Model Succinctly

Autores: José Fuentes-Sepúlveda, Gonzalo Navarro, Diego Seco
Publicado en: String Processing and Information Retrieval - 26th International Symposium, SPIRE 2019, Segovia, Spain, October 7–9, 2019, Proceedings, Edición 11811, 2019, Página(s) 499-512, ISBN 978-3-030-32685-2
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-32686-9_35

An Index for Sequencing Reads Based on the Colored de Bruijn Graph

Autores: Diego Díaz-Domínguez
Publicado en: String Processing and Information Retrieval - 26th International Symposium, SPIRE 2019, Segovia, Spain, October 7–9, 2019, Proceedings, Edición 11811, 2019, Página(s) 304-321, ISBN 978-3-030-32685-2
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-32686-9_22

Fast Indexes for Gapped Pattern Matching

Autores: Manuel Cáceres, Simon J. Puglisi, Bella Zhukova
Publicado en: SOFSEM 2020: Theory and Practice of Computer Science - 46th International Conference on Current Trends in Theory and Practice of Informatics, SOFSEM 2020, Limassol, Cyprus, January 20–24, 2020, Proceedings, Edición 12011, 2020, Página(s) 493-504, ISBN 978-3-030-38918-5
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-38919-2_40

An Experiment in Learning the Language of Sequence Motifs: Sequence Logos vs. Finite-State Machines

Autores: Gagie, Travis; Kempa, Dominik; Salmela, Leena; Sverdlov, Sophie; Toivonen, Jarkko; Ukkonen, Esko; Francisco, Alexandre
Publicado en: Edición 14, 2017
Editor: bioRxiv
DOI: 10.1101/143024

Lempel-Ziv-like Parsing in Small Space

Autores: Valenzuela, Daniel; Kosolobov, Dmitry; Navarro, Gonzalo; Puglisi, Simon J.
Publicado en: 2019
Editor: arxiv

Assembling Omnitigs using Hidden-Order de Bruijn Graphs

Autores: Díaz-Domínguez, Diego; Belazzougui, Djamal; Gagie, Travis; Mäkinen, Veli; Navarro, Gonzalo; Puglisi, Simon J.
Publicado en: 2019
Editor: arxiv

Compressed data structures for trajectory representation

Autores: Daniil Galaktionov
Publicado en: 2020
Editor: Universidade da Coruña

Compact data structures for large and complex datasets

Autores: Fernando Silva-Coira
Publicado en: 2017
Editor: University of A Coruña

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