Computational Brain Connectivity Mapping

Connectivity–informed spatio–temporal MEG source reconstruction: Simulation results using a MARmodel

Autori: Ivana Kojčić, Théodore Papadopoulo, Rachid Deriche, Samuel Deslauriers-Gauthier
Pubblicato in: Colloque Line Garnero, Numero 2019, 2019
Editore: Colloque

A spherical convolutional neural network for white matter structure imaging via dMRI

Autori: Sedlar Sara, Alimi Abib, Papadopoulo Théodore, Deriche Rachid, Deslauriers-Gauthier Samuel
Pubblicato in: MICCAI 2021 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2021, Strasbourg / Virtual, France, 2021
Editore: Springer Nature i- Lecture Notes in Computer Science (LNCS)

Brain Tissue Microstructure Characterization Using dMRI Based Autoencoder Neural-Networks

Autori: Zucchelli Mauro, Deslauriers-Gauthier Samuel, Deriche Rachid
Pubblicato in: MICCAI 2021 International Workshop on Computational Diffusion MRI, 2021
Editore: Springer Nature i- Lecture Notes in Computer Science (LNCS)

Multi Tissue Modelling of Diffusion MRI Signal Reveals Volume Fraction Bias

Autori: Matteo Frigo, Rutger H. J. Fick, Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), Numero 2020, 2020, Pagina/e 991-994, ISBN 978-1-5386-9330-8
Editore: IEEE
DOI: 10.1109/isbi45749.2020.9098649

A Paradigm Free Regularization Approach to Recover Brain Activations: Validation on Task fMRI

Autori: Costantini Isa, Deslauriers-Gauthier Samuel, Deriche Rachid
Pubblicato in: 28th Annual Meeting & Exhibition of the International Society for Magnetic Resonance in Medicine, Numero 2020 ISMRM, 2020
Editore: ISMRM

Quantitative assessment of multi-scale tractography: bridging the resolution gap with 3D-PLI

Autori: Alimi Abib, Frigo Matteo, Deslauriers-Gauthier Samuel, Deriche Rachid
Pubblicato in: ISMRM Virtual Conference & Exhibition, Numero 2020 ISMRM, 2020
Editore: ISMRM

Diffusion MRI fiber orientation distribution function estimation using voxel-wise spherical U-net

Autori: Sedlar Sara, Papadopoulo, Théodore, Deriche Rachid;
Pubblicato in: International MICCAI Workshop 2020 - Computational Diffusion MRI, Numero 2020 CDMRI, 2020
Editore: MICCAI

Multi-compartment modelling of diffusion MRI signal shows TE-based volume fraction bias

Autori: Frigo Matteo. Zucchelli Mauro, Fick, Rutger, Deslauriers-Gauthier, Samuel, Deriche, Rachid
Pubblicato in: 26th meeting of the Organization of Human Brain Mapping, Numero 2020 OHBM, 2020
Editore: OHBM

Spatially Varying Monte Carlo Sure for the Regularization of Biomedical Images

Autori: Marco Pizzolato, Rachid Deriche, Erick Jorge Canales-Rodriguez, Jean-Philippe Thiran
Pubblicato in: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), Numero 2019, 2019, Pagina/e 1639-1642, ISBN 978-1-5386-3641-1
Editore: IEEE
DOI: 10.1109/isbi.2019.8759338

Fully-Connected Neural Network and Spherical-Harmonics Rotation Invariant Features improve the estimation of brain tissue microstructure in Diffusion MRI

Autori: Zucchelli Mauro, Deslauriers-Gauthier Samuel, Deriche Rachid
Pubblicato in: SOPHI.A Summit 2020, Numero 2020 SOPHI.A Summit, 2020
Editore: Inria

A Unified Model for Structure-function Mapping Based on Eigenmodes

Autori: Deslauriers-Gauthier Samuel, Deriche Rachid
Pubblicato in: 26th meeting of the Organisation for Humain Brain Mappin, Numero 2020 OHBM, 2020
Editore: OHBM

Predicting brain functional connectivity from structural connectivity using fully connected neural networks

Autori: Samuel Deslauriers-Gauthier, Mauro Zucchelli, Rachid Deriche
Pubblicato in: SophIA Summit, 2020
Editore: Inria

Groupwise Structural Parcellation of the Cortex: A Sound Approach Based on Logistic Models

Autori: Guillermo Gallardo, Rutger Fick, William Wells, Rachid Deriche, Demian Wassermann
Pubblicato in: MICCAI 2016: Computational Diffusion MRI, Numero Part of the Mathematics and Visualization book series (MATHVISUAL), 2016, Pagina/e 99-112, ISBN 978-3-319-54129-7
Editore: Springer, Cham
DOI: 10.1007/978-3-319-54130-3_8

Inference and Visualization of Information Flow in the Visual Pathway Using dMRI and EEG

Autori: Samuel Deslauriers-Gauthier, Jean-Marc Lina, Russell Butler, Pierre-Michel Bernier, Kevin Whittingstall, Rachid Deriche, Maxime Descoteaux
Pubblicato in: International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2017), Numero LNCS, vol 10433, 2017, Pagina/e 505-512, ISBN 978-3-319-66181-0
Editore: Springer, Cham
DOI: 10.1007/978-3-319-66182-7_58

Large brain effective network from EEG/MEG data and dMR information

Autori: Brahim Belaoucha, Theodore Papadopoulo
Pubblicato in: 2017 International Workshop on Pattern Recognition in Neuroimaging (PRNI), 2017, Pagina/e 1-4, ISBN 978-1-5386-3159-1
Editore: IEEE
DOI: 10.1109/PRNI.2017.7981511

Spatial regularization based on dMRI to solve EEG/MEG inverse problem

Autori: Brahim Belaoucha, Theodore Papadopoulo
Pubblicato in: 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Numero 39th, 2017, Pagina/e 3608-3611, ISBN 978-1-5090-2809-2
Editore: IEEE
DOI: 10.1109/EMBC.2017.8037638

Assessing the feasibility of estimating axon diameter using diffusion models and machine learning

Autori: Rutger H.J. Fick, Neda Sepasian, Marco Pizzolato, Andrada Ianus, Rachid Deriche
Pubblicato in: 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), Numero 14th, 2017, Pagina/e 766-769, ISBN 978-1-5090-1172-8
Editore: IEEE
DOI: 10.1109/ISBI.2017.7950631

Multi-Spherical Diffusion MRI: Exploring Diffusion Time Using Signal Sparsity

Autori: Rutger H. J. Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann
Pubblicato in: Computational Diffusion MRI. MICCAI 2016, Numero Mathematics and Visualization, 2016, Pagina/e 71-83, ISBN 978-3-319-54129-7
Editore: Springer International Publishing
DOI: 10.1007/978-3-319-54130-3_6

Mipy: An Open-Source Framework to improve reproducibility in Brain Microstructure Imaging

Autori: Rutger Fick, Demian Wassermann, Rachid Deriche
Pubblicato in: Organization for Human Brain Mapping, Numero 2018 OHBM, 2018
Editore: Organization for Human Brain Mapping

Reducing false positive connection in tractograms using joint structure-function filtering

Autori: Matteo Frigo, Guillermo Gallardo, Isa Constantini, Alessandro Daducci, Demian Wassermann, Rachid Deriche, Samuel Deslauriers-Gauthier
Pubblicato in: Organization for Human Brain Mapping, Numero 2018 OHBM, 2018
Editore: Organization for Human Brain Mapping

Effects of tractography filtering on the topology and interpretability of connectomes

Autori: Frigo Matteo, Deslauriers-Gauthier Samuel, Parker Drew, Aziz Abdol, Ismail Ould, Kim John, Verma Ragini, Deriche Rachid
Pubblicato in: The Organization for Human Brain Mapping (OHBM), Numero 2019 OHBM, 2019
Editore: OHBM

Regularizing the ODF estimate with the Laplace-Beltrami operator in 3D Polarized Light Imaging

Autori: Alimi Abib O. Y., Deslauriers-Gauthier Samuel, Deriche Rachid
Pubblicato in: CoBCoM 2017 - Computational Brain Connectivity Mapping Winter School Workshop, Numero 2017 CoBCoM, 2017
Editore: Inria

Towards the assessment of myelination using time-dependent diffusion MRI indices}

Autori: Alimi Abib, Petiet Alexandra , Santin Mathieu, Philippe Anne-Charlotte, Leh{\'e}ricy St{\'e}phane. Deriche Rachid, Wassermann Demian
Pubblicato in: ISMRM 2018 - 26th International Society for Magnetic Resonance in Medicine, Numero 2018 ISMRM, 2018
Editore: ISMRM

Solving the inclination sign ambiguity in three dimensional Polarized Light Imaging with a PDE-based method

Autori: Abib Alimi, Marco Pizzolato, Rutger H.J. Fick, Rachid Deriche
Pubblicato in: 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), Numero 2017 ISBI, 2017, Pagina/e 737-740, ISBN 978-1-5090-1172-8
Editore: IEEE
DOI: 10.1109/isbi.2017.7950624

Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment

Autori: A. Alimi, S. Deslauriers-Gauthier, F. Matuschke, D. Schmitz, M. Axer, R. Deriche
Pubblicato in: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), Numero 2019 ISBI, 2019, Pagina/e 1652-1655, ISBN 978-1-5386-3641-1
Editore: IEEE
DOI: 10.1109/isbi.2019.8759298

Towards validation of diffusion MRI tractography: bridging the resolution gap with 3D Polarized Light Imaging

Autori: Abib Alimi, Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine}, Numero 2019 ISMRM, 2019
Editore: ISMRM

White matter fiber bundles as a source model in the MEG inverse problem

Autori: Kostiantyn Maksymenko, Th{\'e}odore Papadopoulo, Samuel Deslauriers-Gauthier
Pubblicato in: COBCOM 2017 - Computational Brain Connectivity Mapping, Winter School Workshop, Numero 2017 COBCOM, 2017
Editore: Inria

Data-driven cortical clustering to provide a family of plausible solutions to M/EEG inverse problem

Autori: Kostiantyn Maksymenko, Maureen Clerc, Th{\'e}odore Papadopoulo
Pubblicato in: iTWIST: international Traveling Workshop on Interactions between low-complexity data models and Sensing Techniques, Numero 2018 ITWIST, 2018
Editore: iTWIST

Information Flow in the White Matter During a Motor Task: A Structural Connectivity Driven Approach

Autori: Guillermo Gallardo, Demian Wassermann, Rachid Deriche, Maxime Descoteaux, Samuel Deslauriers-Gauthier
Pubblicato in: Organization for Human Brain Mapping ', Numero 2017 OHBM, 2017
Editore: OHBM

Multi-Spherical Diffusion MRI: An in-vivo Test- Retest Study of Time-Dependent q-space Indices

Autori: Rutger H. J. Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann
Pubblicato in: ISMRM 2017: 25th International Society for Magnetic Resonance in Medicine, Numero 2017 ISMRM, 2017
Editore: ISMRM

Spatio-Temporal dMRI Acquisition Design: Reducing the Number of Samples

Autori: Patryk Filipiak , Rutger Fick , Alexandra Petiet , Mathieu Santin , Anne-Charlotte Philippe , Stéphane Lehéricy , Rachid Deriche , Demian Wassermann
Pubblicato in: ISMRM 2018: 26h International Society for Magnetic Resonance in Medicine, Numero 2018 ISMRM, 2018
Editore: ISMRM

Diffusion Driven Label Fusion for White Matter Multi-Atlas Segmentation

Autori: Guillermo Gallardo , Sylvain Bouix, Demian Wassermann
Pubblicato in: OHBM 2018 - Organization for Human Brain Mapping,, Numero 2018 OHBM, 2018
Editore: OHBM

Solving the Cross-Subject Parcel Matching Problem using Optimal Transport

Autori: Guillermo Gallardo , Nathalie Gayraud , Rachid Deriche , Maureen Clerc , Samuel Deslauriers-Gauthier , Demian Wassermann
Pubblicato in: International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2018), Numero 2018 MICCAI, 2018, ISBN 9783-030009281
Editore: Springer International Publishing

A Novel Atlas of Human Cerebral Cortex based on Extrinsic Connectivity

Autori: Guillermo Gallardo , Rachid Deriche , Demian Wassermann
Pubblicato in: OHBM 2017 - Organization for Human Brain Mapping 2017 Annual Meeting, Numero 2017 OHBM, 2017
Editore: OHBM

Iterative two-stage approach to estimate sources and their interactions

Autori: Brahim Belaoucha , Théodore Papadopoulo
Pubblicato in: 20th International Conference on Biomagnetism (BIOMAG2016),, Numero 2016 BIOMAG, 2016
Editore: BIOMAG

fMRI Deconvolution via Temporal Regularization using a LASSO model and the LARS algorithm

Autori: Isa Costantini , Patryk Filipiak , Kostiantyn Maksymenko , Samuel Deslauriers-Gauthier , Rachid Deriche
Pubblicato in: EMBC'18 - 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Numero 2018 EMBC, 2018
Editore: EMBC

L1-Norm Regularized Deconvolution of Functional MRI BOLD Signal

Autori: Isa Costantini , Patryk Filipiak , Kostiantyn Maksymenko , Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: C@UCA, 2018
Editore: UCA

Multi-Spherical MRI: Breaking the Boundaries of Diffusion Time

Autori: Rutger Fick , Alexandra Petiet , Mathieu Santin , Anne-Charlotte Philippe , Stéphane Lehericy ,, Rachid Deriche , Demian Wassermann
Pubblicato in: ISMRM Workshop on: Breaking the Barriers of Diffusion MRI, Numero 2016 ISMRM, 2016
Editore: ISMRM

Estimation of axonal conduction speed and the inter hemispheric transfer time using connectivity informed maximum entropy on the mean

Autori: Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging, Numero 2019 - SPIE MI, 2019, Pagina/e 12, ISBN 9781-510625549
Editore: SPIE
DOI: 10.1117/12.2511736

Estimation of Axon Conduction Delay, Conduction Speed, and Diameter from Information Flow using Diffusion MRI and MEG

Autori: Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine Annual Meeting and Exhibition, Numero 2019 ISMRM, 2019
Editore: ISMRM

Edema-informed anatomically constrained particle filter tractography

Autori: Samuel Deslauriers-Gauthier, Drew Parker, François Rheault, Rachid Deriche, Steven Brem, Maxime Descoteaux, and Ragini Verma
Pubblicato in: MICCAI 2018 - 21st International Conference, Medical Image Computing and Computer Assisted Intervention, Numero LNCS 11072, 2018, Pagina/e 375-382
Editore: Springer

Coarse-Grained Spatiotemporal Acquisition Design for Diffusion MRI

Autori: P. Filipiak, R. Fick, A. Petiet, M. Santin, A.-C. Philippe, S. Lehericy, R. Deriche, D. Wassermann
Pubblicato in: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), Numero 2019 ISBI, 2019, Pagina/e 155-158, ISBN 978-1-5386-3641-1
Editore: IEEE
DOI: 10.1109/isbi.2019.8759195

Novel 4-D Algorithm for Functional MRI Image Regularization using Partial Differential Equations

Autori: Isa Costantini, Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: ISMRM 2019 - 27th International Society for Magnetic Resonance in Medicine Annual Meeting and Exhibition, Numero 2019 ISMRM, 2019
Editore: ISMRM

Deconvolution of fMRI BOLD signal in time-domain using an exponential operator and Lasso optimization

Autori: Isa Costantini, Patryk Filipiak, Kostiantyn Maksymenko, Rachid Deriche, Samuel Deslauriers-Gauthier
Pubblicato in: COBCOM 2017 - Computational Brain Connectivity Mapping, Winter School Workshop, Numero 2017 COBCOM, 2017
Editore: Inria

Deconvolution of fMRI Data using a Paradigm Free Iterative Approach based on Partial Differential Equations

Autori: Isa Costantini, Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: OHBM 2019 - Organization for Human Brain Mapping 2019 Annual Meeting, Numero 2019 OHBM, 2019
Editore: OHBM

Connectivity-informed solution for spatio-temporal M/EEG source reconstruction

Autori: Ivana Kojčić, Théodore Papadopoulo, Rachid Deriche, Samuel Deslauriers-Gauthier
Pubblicato in: First meeting of the NeuroMod Institute, Numero 2019 NeuroMod, 2019
Editore: NeuroMod

A Novel Characterization of Traumatic Brain Injury in White Matter with Diffusion MRI Spherical-Harmonics Rotation Invariants

Autori: Zucchelli Mauro, Parker Drew, Deslauriers-Gauthier Samuel, Kim Junghoon, Verma Ragini, Deriche Rachid
Pubblicato in: ISMRM 2019 - 27th Annual Meeting International Society for Magnetic Resonance in Medicine, Numero 2019 ISMRM, 2019
Editore: ISMRM

Data-driven cortical clustering to provide a family of plausible solutions to the M/EEG inverse problem

Autori: Kostiantyn Maksymenko, Maureen Clerc, Théodore Papadopoulo
Pubblicato in: BIOMAG 2018, Aug 2018, Philadelphia, United States., Numero 2018 BIOMAG, 2018
Editore: BIOMAG

Solving the Cross-Subject Parcel Matching Problem using Optimal Transport

Autori: Guillermo Gallardo, Nathalie Gayraud, Rachid Deriche, Maureen Clerc, Samuel Deslauriers-Gauthier, Demian Wassermann
Pubblicato in: International Conference on Medical Image Computing and Computer-Assisted Intervention 2018,, Numero 2018 MICCAI, 2018
Editore: Springer

Matching parcellations using Optimal Transport: a proof of concept

Autori: Guillermo Gallardo, Nathalie Thérèse Hélène Gayraud, Maureen Clerc, Demian Wassermann
Pubblicato in: Computational Brain Connectivity Mapping – Winter School Workshop 2017, Nov 2017, Juan-les-Pins, France., Numero 2017 CoBCoM, 2017
Editore: CoBCoM

Connectivity-informed M/EEG inverse problem

Autori: Ivana Kojčić, Théodore Papadopoulo, Rachid Deriche, Samuel Deslauriers-Gauthier
Pubblicato in: MICCAI Workshop on GRaphs in biomedicAl Image anaLysis (2020), Numero 2020 MICCAI, 2020
Editore: Springer

Spherical convolutional neural network for diffusion MRI analysis

Autori: Sedlar Sara, Alimi Abib, Papadopoulo Théodore, Deriche Rachid
Pubblicato in: Soph.IA Summit 2019, Numero 2019 Soph.IA Summit, 2019
Editore: Inria

OpenMEEG software for forward problems, coping with non-nested geometries

Autori: Clerc Maureen, Gramfort Alexandre, Papadopoulo Théodore
Pubblicato in: 21st International Conference on Biomagnetism, Numero 2018 Biomagnetism, 2018
Editore: BIOMAG

Investigating The Effect Of Dmri Signal Representation On Fully-Connected Neural Networks Brain Tissue Microstructure Estimation

Autori: Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021, Pagina/e 725-728, ISBN 978-1-6654-1246-9
Editore: IEEE
DOI: 10.1109/isbi48211.2021.9434046

Investigating Diffusion-MRI based neurite density estimation modeL dependency: an in-vivo study on the HCP dataset

Autori: Mauro Zucchelli, Maxime Descoteaux, Gloria Menegaz
Pubblicato in: ISMRM 2018 - International Society for Magnetic Resonance in Medicine,, Numero 2018 ISMRM, 2018
Editore: ISMRM

Incorporating Transmission Delays Supported By Diffusion Mri In Meg Source Reconstruction

Autori: Ivana Kojcic, Theodore Papadopoulo, Rachid Deriche, Samuel Deslauriers-Gauthier
Pubblicato in: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021, Pagina/e 64-68, ISBN 978-1-6654-1246-9
Editore: IEEE
DOI: 10.1109/isbi48211.2021.9433861

Novel algorithmic approaches for the forward and inverse M/EEG problems

Autori: Maksymenko, Kostiantyn
Pubblicato in: Université Côte d'Azur, Numero 2019 Ph.D, 2019
Editore: Université Côte d'Azur

Paradigm Free Regularization for fMRI Brain Activation Recovery

Autori: Costantini, Isa
Pubblicato in: Université Côte d'Azur, Numero 2020 Ph.D, 2020
Editore: Université Côte d'Azur

Three-dimensional Polarized Light Imaging: Towards Multiscale and Multimodal Analysis with Diffusion Magnetic Resonance Imaging

Autori: Alimi, Abib
Pubblicato in: Université Côte d'Azur, Numero 2020 Ph.D, 2020
Editore: Université Côte d'Azur

Advanced dMRI signal modeling for tissue microstructure characterization

Autori: Rutger Fick
Pubblicato in: Université Côte d'Azur, Numero 2017, 2017
Editore: Université Côte d'Azur

A unified framework for multimodal structure–function mapping based on eigenmodes

Autori: Samuel Deslauriers-Gauthier, Mauro Zucchelli, Matteo Frigo, Rachid Deriche
Pubblicato in: Medical Image Analysis, Numero 66, 2020, Pagina/e 101799, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/j.media.2020.101799

Interpretable Deep Learning as a means for decrypting disease signature in Multiple Sclerosis

Autori: Federica Cruciani, Lorenza Brusini, Mauro Zucchelli, Gustavo Retuci Pinheiro, Francesco Setti, Ilaria Boscolo Galazzo, Rachid Deriche, Leticia Rittner, Massimiliano Calabrese, Gloria Menegaz
Pubblicato in: Journal of Neural Engineering, 2021, ISSN 1741-2560
Editore: Institute of Physics Publishing
DOI: 10.1088/1741-2552/ac0f4b

Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging

Autori: Abib Alimi, Samuel Deslauriers-Gauthier, Felix Matuschke, Andreas Müller, Sascha E.A. Muenzing, Markus Axer, Rachid Deriche
Pubblicato in: Medical Image Analysis, Numero 65, 2020, Pagina/e 101760, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/j.media.2020.101760

Network alignment and similarity reveal atlas-based topological differences in structural connectomes

Autori: Matteo Frigo, Emilio Cruciani, David Coudert, Rachid Deriche, Emanuele Natale, Samuel Deslauriers-Gauthier
Pubblicato in: Network Neuroscience, 2021, Pagina/e 1-23, ISSN 2472-1751
Editore: MIT Press Direct
DOI: 10.1162/netn_a_00199

The Dmipy Toolbox: Diffusion MRI Multi-Compartment Modeling and Microstructure Recovery Made Easy

Autori: Rutger H. J. Fick, Demian Wassermann, Rachid Deriche
Pubblicato in: Frontiers in Neuroinformatics, Numero 13, 2019, ISSN 1662-5196
Editore: Frontiers Research Foundation
DOI: 10.3389/fninf.2019.00064

Diffusion MRI tractography filtering techniques change the topology of structural connectomes

Autori: Matteo Frigo, Samuel Deslauriers-Gauthier, Drew Parker, Abdol Aziz Ould Ismail, Junghoon John Kim, Ragini Verma, Rachid Deriche
Pubblicato in: Journal of Neural Engineering, Numero 17/6, 2020, Pagina/e 065002, ISSN 1741-2560
Editore: Institute of Physics Publishing
DOI: 10.1088/1741-2552/abc29b

A comprehensive study on electroencephalography and magnetoencephalography sensitivity to cortical and subcortical sources

Autori: Maria Carla Piastra, Andreas Nüßing, Johannes Vorwerk, Maureen Clerc, Christian Engwer, Carsten H. Wolters
Pubblicato in: Human Brain Mapping, Numero 42/4, 2021, Pagina/e 978-992, ISSN 1065-9471
Editore: John Wiley & Sons Inc.
DOI: 10.1002/hbm.25272

A computational Framework for generating rotation invariant features and its application in diffusion MRI

Autori: Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: Medical Image Analysis, Numero 60, 2020, Pagina/e 101597, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/j.media.2019.101597

Computational brain connectivity mapping: A core health and scientific challenge

Autori: Rachid Deriche
Pubblicato in: Medical Image Analysis, Numero 33, 2016, Pagina/e 122-126, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/j.media.2016.06.003

AxTract: Toward microstructure informed tractography

Autori: Gabriel Girard, Alessandro Daducci, Laurent Petit, Jean-Philippe Thiran, Kevin Whittingstall, Rachid Deriche, Demian Wassermann, Maxime Descoteaux
Pubblicato in: Human Brain Mapping, Numero 38/11, 2017, Pagina/e 5485-5500, ISSN 1065-9471
Editore: John Wiley & Sons Inc.
DOI: 10.1002/hbm.23741

Groupwise structural parcellation of the whole cortex: A logistic random effects model based approach

Autori: Guillermo Gallardo, William Wells, Rachid Deriche, Demian Wassermann
Pubblicato in: NeuroImage, Numero Available online 1 February 2017, 2017, ISSN 1053-8119
Editore: Academic Press
DOI: 10.1016/j.neuroimage.2017.01.070

Non-parametric graphnet-regularized representation of dMRI in space and time

Autori: Rutger H.J. Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann
Pubblicato in: Medical Image Analysis, Numero 43, 2018, Pagina/e 37-53, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/j.media.2017.09.002

Using diffusion MRI to discriminate areas of cortical grey matter

Autori: Tharindu Ganepola, Zoltan Nagy, Aurobrata Ghosh, Theodore Papadopoulo, Daniel C. Alexander, Martin I. Sereno
Pubblicato in: NeuroImage, Numero 17, 2017, ISSN 1053-8119
Editore: Academic Press
DOI: 10.1016/j.neuroimage.2017.12.046

Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison

Autori: Uran Ferizi, Benoit Scherrer, Torben Schneider, Mohammad Alipoor, Odin Eufracio, Rutger H.J. Fick, Rachid Deriche, Markus Nilsson, Ana K. Loya-Olivas, Mariano Rivera, Dirk H.J. Poot, Alonso Ramirez-Manzanares, Jose L. Marroquin, Ariel Rokem, Christian Pötter, Robert F. Dougherty, Ken Sakaie, Claudia Wheeler-Kingshott, Simon K. Warfield, Thomas Witzel, Lawrence L. Wald, José G. Raya, Daniel C. Al
Pubblicato in: NMR in Biomedicine, Numero 30/9, 2017, Pagina/e e3734, ISSN 0952-3480
Editore: John Wiley & Sons Inc.
DOI: 10.1002/nbm.3734

Adaptive Waveform Learning: A Framework for Modeling Variability in Neurophysiological Signals

Autori: Sebastian Hitziger, Maureen Clerc, Sandrine Saillet, Christian Benar, Theodore Papadopoulo
Pubblicato in: IEEE Transactions on Signal Processing, Numero 65/16, 2017, Pagina/e 4324-4338, ISSN 1053-587X
Editore: Institute of Electrical and Electronics Engineers
DOI: 10.1109/TSP.2017.2698415

Rational Invariants of Even Ternary Forms Under the Orthogonal Group

Autori: Paul Görlach, Evelyne Hubert, Théo Papadopoulo
Pubblicato in: Foundations of Computational Mathematics, 2018, Pagina/e 1-47, ISSN 1615-3375
Editore: Springer Verlag
DOI: 10.1007/s10208-018-9404-1

Fiber orientation distribution function from non-negative sparse recovery with quantitative analysis of local fiber orientations and tractography using DW-MRI datasets

Autori: Thinhinane Megherbi, Gabriel Girard, Aurobrata Ghosh, Fatima Oulebsir-Boumghar, Rachid Deriche
Pubblicato in: Magnetic Resonance Imaging, Numero 57, 2019, Pagina/e 218-234, ISSN 0730-725X
Editore: Elsevier BV
DOI: 10.1016/j.mri.2018.10.003

Reducing the number of samples in spatiotemporal dMRI acquisition design

Autori: Patryk Filipiak, Rutger Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Philippe Ciuciu, Rachid Deriche, Demian Wassermann
Pubblicato in: Magnetic Resonance in Medicine, Numero 81/5, 2019, Pagina/e 3218-3233, ISSN 0740-3194
Editore: John Wiley & Sons Inc.
DOI: 10.1002/mrm.27601

Fast Approximation of EEG Forward Problem and Application to Tissue Conductivity Estimation

Autori: Kostiantyn Maksymenko, Maureen Clerc, Theodore Papadopoulo
Pubblicato in: IEEE Transactions on Medical Imaging, Numero 2019 IEEE TMI, 2019, Pagina/e 1-1, ISSN 0278-0062
Editore: Institute of Electrical and Electronics Engineers
DOI: 10.1109/TMI.2019.2936921

Non–invasive inference of information flow using diffusion MRI, functional MRI, and MEG

Autori: Samuel Deslauriers-Gauthier, Isa Costantini, Rachid Deriche
Pubblicato in: Journal of Neural Engineering, Numero 17/4, 2020, Pagina/e 045003, ISSN 1741-2552
Editore: Wiley
DOI: 10.1088/1741-2552/ab95ec

On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge

Autori: Alberto De Luca, Andrada Ianus, Alexander Leemans, Marco Palombo, Noam Shemesh, Hui Zhang, Daniel C. Alexander, Markus Nilsson, Martijn Froeling, Geert-Jan Biessels, Mauro Zucchelli, Matteo Frigo, Enes Albay, Sara Sedlar, Abib Alimi, Samuel Deslauriers-Gauthier, Rachid Deriche, Rutger Fick, Maryam Afzali, Tomasz Pieciak, Fabian Bogusz, Santiago Aja-Fernández, Evren Özarslan, Derek K. Jones, Haoz
Pubblicato in: NeuroImage, Numero 240, 2021, Pagina/e 118367, ISSN 1053-8119
Editore: Academic Press
DOI: 10.1016/j.neuroimage.2021.118367

Structural connectivity to reconstruct brain activation and effective connectivity between brain regions

Autori: Brahim Belaoucha, Théodore Papadopoulo
Pubblicato in: Journal of Neural Engineering, Numero 17/3, 2020, Pagina/e 035006, ISSN 1741-2552
Editore: IOPScience
DOI: 10.1088/1741-2552/ab8b2b

White matter information flow mapping from diffusion MRI and EEG

Autori: Samuel Deslauriers-Gauthier, Jean-Marc Lina, Russell Butler, Kevin Whittingstall, Guillaume Gilbert, Pierre-Michel Bernier, Rachid Deriche, Maxime Descoteaux
Pubblicato in: NeuroImage, Numero 201, 2019, Pagina/e 116017, ISSN 1053-8119
Editore: Academic Press
DOI: 10.1016/j.neuroimage.2019.116017

Multi-Tissue Multi-Compartment Models of Diffusion MRI

Autori: Matteo Frigo, Rutger Fick, Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: 2021, Numero 2021, 2021
Editore: Inria

Network alignment and similarity reveal atlas-based topological differences in structural connectomes

Autori: Matteo Frigo, Emilio Cruciani, David Coudert, Rachid Deriche, Emanuele Natale, Samuel Deslauriers-Gauthier
Pubblicato in: 2020, Numero 2020, 2020
Editore: Inria

Interpretable Deep Learning as a mean for decrypting disease signature in Multiple Sclerosis

Autori: Federica Cruciani, Lorenza Brusini, Mauro Zucchelli, Gustavo Retuci Pinheiro, Francesco Setti, Ilaria Boscolo Galazzo, Rachid Deriche, Leticia Rittner, Massimiliano Calabrese, Gloria Menegaz
Pubblicato in: 2020, Numero 2020, 2020
Editore: Inria

Improving Auto-Encoders' self-supervised image classification using pseudo-labelling via data augmentation and the perceptual loss

Autori: Bouayed, Aymene Mohammed; Atif, Karim; Deriche, Rachid; saim, abdelhakim
Pubblicato in: 2020, Numero 2020, 2020
Editore: Inria

Explainable 3D-CNN for Multiple Sclerosis patients stratification

Autori: Federica Cruciani, Lorenza Brusini, Mauro Zucchelli, Gustavo Retuci Pinheiro, Francesco Setti, Ilaria Boscolo Galazzo, Rachid Deriche, Leticia Rittner, Massimiliano Calabrese, Gloria Menegaz
Pubblicato in: 2020, Numero 2020, 2020
Editore: Inria

Multi-Tissue Multi-Compartment models of diffusion MRI

Autori: Matteo Frigo, Rutger Fick, Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid, Deriche
Pubblicato in: bioRxiv, 2021
Editore: bioRxiv
DOI: 10.1101/2021.01.29.428843

Resolving the Crossing/Kissing Fiber Ambiguity Using Functionally Informed COMMIT

Autori: Matteo Frigo, Isa Costantini, Rachid Deriche, Samuel Deslauriers-Gauthier
Pubblicato in: Computational Diffusion MRI - International MICCAI Workshop, Granada, Spain, September 2018, Numero 2019 CDMRI, 2019, Pagina/e 335-343, ISBN 978-3-030-05830-2
Editore: Springer International Publishing
DOI: 10.1007/978-3-030-05831-9_26

Dmipy, A Diffusion Microstructure Imaging Toolbox in Python to Improve Research Reproducibility

Autori: Abib Alimi, Rutger Fick, Demian Wassermann, Rachid Deriche
Pubblicato in: Computational Diffusion MRI - International MICCAI Workshop, Granada, Spain, September 2018, Numero 2019 CDMRI, 2019, Pagina/e 55-67, ISBN 978-3-030-05830-2
Editore: Springer International Publishing
DOI: 10.1007/978-3-030-05831-9_5

A Closed-Form Solution of Rotation Invariant Spherical Harmonic Features in Diffusion MRI

Autori: Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid Deriche
Pubblicato in: Computational Diffusion MRI - International MICCAI Workshop, Granada, Spain, September 2018, Numero 2019 CDMRI, 2019, Pagina/e 77-89, ISBN 978-3-030-05830-2
Editore: Springer International Publishing
DOI: 10.1007/978-3-030-05831-9_7

Spatio-Temporal dMRI Acquisition Design: Reducing the Number of qτ Samples Through a Relaxed Probabilistic Model

Autori: Patryk Filipiak, Rutger Fick, Alexandra Petiet, Mathieu Santin, Anne-Charlotte Philippe, Stephane Lehericy, Rachid Deriche, Demian Wassermann
Pubblicato in: Computational Diffusion MRI, Numero 2018 CDMRI, 2018, Pagina/e 37-49, ISBN 978-3-319-73838-3
Editore: Springer International Publishing
DOI: 10.1007/978-3-319-73839-0_3

Extracting the Groupwise Core Structural Connectivity Network: Bridging Statistical and Graph-Theoretical Approaches

Autori: Nahuel Lascano, Guillermo Gallardo-Diez, Rachid Deriche, Dorian Mazauric, Demian Wassermann
Pubblicato in: Information Processing in Medical Imaging, Numero 10265, 2017, Pagina/e 373-384, ISBN 978-3-319-59049-3
Editore: Springer International Publishing
DOI: 10.1007/978-3-319-59050-9_30

Diffusion MRI Anisotropy: Modeling, Analysis and Interpretation

Autori: Rutger H. J. Fick, Marco Pizzolato, Demian Wassermann, Rachid Deriche
Pubblicato in: Modeling, Analysis, and Visualization of Anisotropy, 2017, Pagina/e 203-228, ISBN 978-3-319-61357-4
Editore: Springer International Publishing
DOI: 10.1007/978-3-319-61358-1_9

Extracting the Core Structural Connectivity Network: Guaranteeing Network Connectedness Through a Graph-Theoretical Approach

Autori: Demian Wassermann, Dorian Mazauric, Guillermo Gallardo-Diez, Rachid Deriche
Pubblicato in: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016, Numero 9900, 2016, Pagina/e 89-96, ISBN 978-3-319-46719-1
Editore: Springer International Publishing
DOI: 10.1007/978-3-319-46720-7_11

Comparison of Biomarkers in Transgenic Alzheimer Rats Using Multi-Shell Diffusion MRI

Autori: Rutger H. J. Fick, Madelaine Daianu, Marco Pizzolato, Demian Wassermann, Russell E. Jacobs, Paul M. Thompson, Terrence Town, Rachid Deriche
Pubblicato in: Computational Diffusion MRI, Numero 2017 CDMRI, 2017, Pagina/e 187-199, ISBN 978-3-319-54129-7
Editore: Springer International Publishing
DOI: 10.1007/978-3-319-54130-3_16

Explainable 3D-CNN for Multiple Sclerosis Patients Stratification

Autori: Federica Cruciani, Lorenza Brusini, Mauro Zucchelli, Gustavo Retuci Pinheiro, Francesco Setti, Ilaria Boscolo Galazzo, Rachid Deriche, Leticia Rittner, Massimiliano Calabrese, Gloria Menegaz
Pubblicato in: Pattern Recognition. ICPR International Workshops and Challenges - Virtual Event, January 10–15, 2021, Proceedings, Part III, Numero 12663, 2021, Pagina/e 103-114, ISBN 978-3-030-68795-3
Editore: Springer International Publishing
DOI: 10.1007/978-3-030-68796-0_8

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