Herpesvirus Effectors of RNA synthesis, Processing, Export and Stability

Publications

Peer reviewed articles (9)

HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes

Author(s): Thomas Hennig, Marco Michalski, Andrzej J. Rutkowski, Lara Djakovic, Adam W. Whisnant, Marie-Sophie Friedl, Bhaskar Anand Jha, Marisa A. P. Baptista, Anne L’Hernault, Florian Erhard, Lars Dölken, Caroline C. Friedel
Published in: PLOS Pathogens, 14/3, 2018, Page(s) e1006954, ISSN 1553-7374
Publisher: PLoS Pathogens
DOI: 10.1371/journal.ppat.1006954

Dissecting newly transcribed and old RNA using GRAND-SLAM

Author(s): Christopher Jürges, Lars Dölken, Florian Erhard
Published in: Bioinformatics, 34/13, 2018, Page(s) i218-i226, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/bty256

Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection

Author(s): Emanuel Wyler, Jennifer Menegatti, Vedran Franke, Christine Kocks, Anastasiya Boltengagen, Thomas Hennig, Kathrin Theil, Andrzej Rutkowski, Carmelo Ferrai, Laura Baer, Lisa Kermas, Caroline Friedel, Nikolaus Rajewsky, Altuna Akalin, Lars Dölken, Friedrich Grässer, Markus Landthaler
Published in: Genome Biology, 18/1, 2017, ISSN 1474-760X
Publisher: BioMed Central
DOI: 10.1186/s13059-017-1329-5

Improved Ribo-seq enables identification of cryptic translation events

Author(s): Florian Erhard, Anne Halenius, Cosima Zimmermann, Anne L'Hernault, Daniel J Kowalewski, Michael P Weekes, Stefan Stevanovic, Ralf Zimmer, Lars Dölken
Published in: Nature Methods, 15/5, 2018, Page(s) 363-366, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/nmeth.4631

RNA dynamics revealed by metabolic RNA labeling and biochemical nucleoside conversions

Author(s): Marisa A P Baptista, Lars Dölken
Published in: Nature Methods, 15/3, 2018, Page(s) 171-172, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/nmeth.4608

P-TEFb Activation by RBM7 Shapes a Pro-survival Transcriptional Response to Genotoxic Stress

Author(s): Andrii Bugai, Alexandre J.C. Quaresma, Caroline C. Friedel, Tina Lenasi, Robert Düster, Christopher R. Sibley, Koh Fujinaga, Petra Kukanja, Thomas Hennig, Melanie Blasius, Matthias Geyer, Jernej Ule, Lars Dölken, Matjaž Barborič
Published in: Molecular Cell, 74/2, 2019, Page(s) 254-267.e10, ISSN 1097-2765
Publisher: Cell Press
DOI: 10.1016/j.molcel.2019.01.033

scSLAM-seq reveals core features of transcription dynamics in single cells

Author(s): Florian Erhard, Marisa A. P. Baptista, Tobias Krammer, Thomas Hennig, Marius Lange, Panagiota Arampatzi, Christopher S. Jürges, Fabian J. Theis, Antoine-Emmanuel Saliba, Lars Dölken
Published in: Nature, 571/7765, 2019, Page(s) 419-423, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-019-1369-y

Integrative functional genomics decodes herpes simplex virus 1

Author(s): Adam W. Whisnant, Christopher S. Jürges, Thomas Hennig, Emanuel Wyler, Bhupesh Prusty, Andrzej J. Rutkowski, Anne L’hernault, Lara Djakovic, Margarete Göbel, Kristina Döring, Jennifer Menegatti, Robin Antrobus, Nicholas J. Matheson, Florian W. H. Künzig, Guido Mastrobuoni, Chris Bielow, Stefan Kempa, Chunguang Liang, Thomas Dandekar, Ralf Zimmer, Markus Landthaler, Friedrich Grässer, Paul J
Published in: Nature Communications, 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-15992-5

Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27

Author(s): Xiuye Wang, Thomas Hennig, Adam W. Whisnant, Florian Erhard, Bhupesh K. Prusty, Caroline C. Friedel, Elmira Forouzmand, William Hu, Luke Erber, Yue Chen, Rozanne M. Sandri-Goldin, Lars Dölken, Yongsheng Shi
Published in: Nature Communications, 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-019-14109-x