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Cryo-electron microscopy: mathematical foundations and algorithms

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Publications

The Steerable Graph Laplacian and its Application to Filtering Image Datasets

Author(s): Boris Landa, Yoel Shkolnisky
Published in: SIAM Journal on Imaging Sciences, Issue 11/4, 2018, Page(s) 2254-2304, ISSN 1936-4954
DOI: 10.1137/18M1169394

Common lines modeling for reference free Ab-initio reconstruction in cryo-EM

Author(s): Ido Greenberg, Yoel Shkolnisky
Published in: Journal of Structural Biology, Issue 200/2, 2017, Page(s) 106-117, ISSN 1047-8477
DOI: 10.1016/j.jsb.2017.09.007

A max-cut approach to heterogeneity in cryo-electron microscopy

Author(s): Yariv Aizenbud, Yoel Shkolnisky
Published in: Journal of Mathematical Analysis and Applications, Issue 479/1, 2019, Page(s) 1004-1029, ISSN 0022-247X
DOI: 10.1016/j.jmaa.2019.06.064

Sampling and approximation of bandlimited volumetric data

Author(s): Rami Katz, Yoel Shkolnisky
Published in: Applied and Computational Harmonic Analysis, Issue 47/1, 2019, Page(s) 235-247, ISSN 1063-5203
DOI: 10.1016/j.acha.2018.11.003

Symmetric Rank-One Updates from Partial Spectrum with an Application to Out-of-Sample Extension

Author(s): Roy Mitz, Nir Sharon, Yoel Shkolnisky
Published in: SIAM Journal on Matrix Analysis and Applications, Issue 40/3, 2019, Page(s) 973-997, ISSN 0895-4798
DOI: 10.1137/18m1172120

A common lines approach for ab-initio modeling of cyclically-symmetric molecules

Author(s): Gabi Pragier, Yoel Shkolnisky
Published in: Inverse Problems, 2019, ISSN 0266-5611
DOI: 10.1088/1361-6420/ab2fb2

Method of moments for 3D single particle ab initio modeling with non-uniform distribution of viewing angles

Author(s): Nir Sharon, Joe Kileel, Yuehaw Khoo, Boris Landa, Amit Singer
Published in: Inverse Problems, Issue 36/4, 2020, Page(s) 044003, ISSN 0266-5611
DOI: 10.1088/1361-6420/ab6139

KLT picker: Particle picking using data-driven optimal templates

Author(s): Amitay Eldar, Boris Landa, Yoel Shkolnisky
Published in: Journal of Structural Biology, 2020, Page(s) 107473, ISSN 1047-8477
DOI: 10.1016/j.jsb.2020.107473