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Mathematical Modelling, Simulation and Optimization for Societal Challenges with Scientific Computing

Deliverables

End Users’ Requirements Report

This is a detailed description of the functional and non-functional requirements of the MSO4SC e-Infrastructure, and high level definition of the pilots to be implemented in WP5, according to the consortium and to the end user community's collaboration.

Case study extended design and evaluation strategy

This document will provide an exhaustive description of all the pilot scenarios proposed. It also describes the overall evaluation strategy, detailing the protocol and procedures that should be followed during the evaluation.

MSO4SC e-Infrastructure Definition (M15)

It contains the detailed definition for the MSO4SC e-Infrastructure, as outcome from T2.2, including features, main functional blocks and interactions.

End Users’ Requirements Report (M10)

This is a detailed description of the functional and non-functional requirements of the MSO4SC e-Infrastructure, and high level definition of the pilots to be implemented in WP5, according to the consortium and to the end user community's collaboration.

Communication, Dissemination and Collaboration Report

This series of deliverables will explain the communication, collaboration and dissemination activities followed during the reporting periods as well as the results from these activities and will update project’s plans respectively. As the project evolves and in synchronization with the exploitation team, the report will include a section covering dissemination strategy under a more commercial or marketing oriented perspective.

MSO4SC Qualification Method (M18)

This document will provide the protocols of testing and qualification procedures that should be followed during the evaluation of independent testing and qualification.

Detailed Specifications for the MADFs Adaptation (M16)

This document describes the specifications and requirements necessary for the adaptation of the MADFS to MSO4SC in terms of build and runtime environments.

MSO4SC e-Infrastructure Definition

It contains the detailed definition for the MSO4SC e-Infrastructure, as outcome from T2.2, including features, main functional blocks and interactions.

Detailed Specifications for the Infrastructure, Cloud Management and MSO Portal

This document contains the detailed description of the solutions to be implemented and the detailed design of the MS Cloud and the MSO Portal, for guiding their implementation.

Detailed Specifications for the Infrastructure, Cloud Management and MSO Portal (M16)

This document contains a second update for M16 with the detailed description of the solutions to be implemented and the detailed design of the MS Cloud and the MSO Portal, for guiding their implementation.

Communication, Dissemination and Collaboration Report (M24)

This series of deliverables will explain the communication, collaboration and dissemination activities followed during the reporting periods as well as the results from these activities and will update project’s plans respectively. As the project evolves and in synchronization with the exploitation team, the report will include a section covering dissemination strategy under a more commercial or marketing oriented perspective.

Case study extended design and evaluation strategy (M18)

This document will provide an updated and exhaustive description of all the pilot scenarios proposed. It also describes the overall evaluation strategy, detailing the protocol and procedures that should be followed during the evaluation.

Initial Communication, Dissemination and Collaboration Plan

This document will detail the plan for the project communication, dissemination, and collaboration strategy, which will be periodically refined throughout the project lifetime. It will identify the main stakeholders and users communities and will layout the dissemination and communication plan for activities to reach out, communicate, and engage with stakeholders. Will also define the initial plan for collaboration and the objectives and KPIs to be monitored during the project. This deliverable will report about the creation of the website and other dissemination means and tools, such as social media, that the consortium will create to promote the project during the first months of the project.

Evaluation report (M24)

Collection, categorization and statistical analysis of the feedback gained by the system engineers, through the evaluation protocol procedures, during the pilot’s execution and e-Infrastructure operation phase. In detail reporting of the experience during the operation of the various showcases. Step-by-step cookbook and methodological guidelines for the adoption and maintenance of the proposed solutions in other social science scenarios.

Evaluation report

Collection, categorization and statistical analysis of the feedback gained by the system engineers, through the evaluation protocol procedures, during the pilot’s execution and e-Infrastructure operation phase. In detail reporting of the experience during the operation of the various showcases. Step-by-step cookbook and methodological guidelines for the adoption and maintenance of the proposed solutions in other social science scenarios.

MSO4SC Qualification Method

This document will provide the protocols of testing and qualification procedures that should be followed during the evaluation of independent testing and qualification.

Qualification of the Project Assets (M24)

This deliverable will provide a book of case studies with an exhaustive description of the testing and qualification methods.

Detailed Specifications for the MADFs Adaptation

This document describes the specifications and requirements necessary for the adaptation of the MADFS to MSO4SC in terms of build and runtime environments.

Qualification of the Project Assets

This deliverable will provide a book of case studies with an exhaustive description of the testing and qualification methods.

Operational MSO4SC e-Infrastructure

This is the fully integrated MSO4SC e-Infrastructure, where all the components coming from WP3 and WP4 are deployed together in the physical infrastructure to be used by the pilots.

Pilot implementation

This deliverable comprehends the implementation of all the pilot scenarios. For each case, the manuscript will contain the details of the implementation, the issues faced and the problems solved so far.

Adapted MADFs for MSO4SC

This document describes the adapted MADFS and the necessary steps to deploy the MADFS components and applications into MSO4SC.

Adapted MADFs for MSO4SC (M22)

This document is an update for M22 and describes the adapted MADFS and the necessary steps to deploy the MADFS components and applications into MSO4SC.

Pilot implementation (M24)

This deliverable comprehends the updated form M24 (and final one) implementation of all the pilot scenarios. For each case, the manuscript will contain the details of the implementation, the issues faced and the problems solved so far.

Integrated Infrastructure, Cloud Management and MSO Portal

This deliverable represents the implementation of all the components belonging to the MSO Cloud and the MSO Portal, which will be already working together thanks to the integration activity. This deliverable will include useful documentation about the implemented components (such as configuration steps).

Integrated Infrastructure, Cloud Management and MSO Portal (M22)

This deliverable represents the updated for M22 of the implementation of all the components belonging to the MSO Cloud and the MSO Portal, which will be already working together thanks to the integration activity. This deliverable will include useful documentation about the implemented components (such as configuration steps).

Operational MSO4SC e-Infrastructure (M22)

This is the fully integrated MSO4SC e-Infrastructure release for M22, where all the components coming from WP3 and WP4 are deployed together in the physical infrastructure to be used by the pilots.

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Publications

A nontoxic pain killer designed by modelling of pathological receptor conformations

Author(s): ZIB
Published in: 2017

Simulation of the HarshLab floating platform for offshore experimentation using FEniCS-HPC

Author(s): M. Moragues Ginard, D. Castañón Quiroz, J. Jansson, V. Nava, E. Krishnasamy, N. C. Degirmenci, V. D. Nguyen, C. Garrido Mendoza, M. Sánchez Lara, R. Rodríguez Arias
Published in: 2018

Comparison of Different Linux Containers

Author(s): SZE
Published in: 2017

Direct Finite Element Simulation and Unified Continuum FSI

Author(s): Johan Hoffman et al.
Published in: 2018

OPM Flow in MSO4SC and other stories

Author(s): Atgeirr Flo Rasmussen
Published in: 2017

Containers in HPC: MSO4SC Singularity use case

Author(s): Victor Sande
Published in: 2017

MSO4SC: Cloud E-Infrastructure Designed by and for the Mathematical Community

Author(s): Victor Sande
Published in: 2018

Reservoir simulation using the MSO4SC infrastructure and OPM Flow

Author(s): Atgeirr Flø Rasmussen, Halvor Møll Nilsen, Arne Morten Kvarving
Published in: 2018

Time-resolved Adaptive Direct FEM Prediction of Flow separation

Author(s): Margarida Moragues Ginard, Daniel Castañón Quiroz ,Niyazi Cem Degirmenci, Johan Jansson, Vincenzo Nava, Ezhilmathi Krishnasamy
Published in: 2018

Finite Element Simulations of Two-phase Flow and Floating Bodies Using FEniCS-HPC

Author(s): Margarida Moragues Ginard, Daniel Castañón Quiroz ,Niyazi Cem Degirmenci, Johan Jansson, Vincenzo Nava, Ezhilmathi Krishnasamy, Johan Hoffman
Published in: 2018

A partition of unity finite element method for computational diffusion mri

Author(s): V. D. Nguyen, J. Jansson, J. Hoffman, and J.-R. Li
Published in: 2018

Adaptive Direct FEM Simulation with Unicorn/FEniCS-HPC for CS1

Author(s): J. Jansson, E. Krishnasamy, M. Leoni
Published in: 2018

Running Simulations in HPC and Cloud Resources by Implementing Enhanced TOSCA Workflows

Author(s): Javier Carnero
Published in: 2018

Ocular Mathematical Virtual Simulator: a hemodynamical and biomechanical study towards clinical applications

Author(s): C. Prud’homme and others
Published in: 2018

Testing and reproducibility of the OPM Flow reservoir simulator

Author(s): Atgeirr Rasmussen
Published in: 2018

A Clinical Pathway for Patient-specific FE simulation of LV hemodynamic based on Echocardiography

Author(s): Johan Hoffman et al.
Published in: 2018

Patient-specific FE simulation of LV hemodynamic

Author(s): Johan Hoffman et al.
Published in: 2018

International energy agency ocean energy systems task 10 wave energy converter modelling verification and validation

Author(s): F. F. Wendt, Y.-H. Yu, K. Nielsen, K. Ruehl, T. Bunnik, I. Touzon, B. W. Nam, J. S. Kim, K.-H. Kim, C. E. Janson, et al.
Published in: 2018

The Open Porous Media framework (OPM)

Author(s): Atgeirr Rasmussen
Published in: 2018

HPC Software Productivity Based on High-Level Abstraction in FEniCS

Author(s): Johan Hoffman et al.
Published in: 2017

Socomec, Axessim, Burkert: presentation of the project, its objective and why it could be interesting to these companies upon completion

Author(s): Christophe Prud’homme
Published in: 2018

Patient-specific FE simulation of LV hemodynamic and MV disease based on Echocardiography

Author(s): Johan Hoffman et al.
Published in: 2018

A posteriori error estimation and adaptive algorithms for CFD

Author(s): Johan Hoffman et al.
Published in: 2018