Publications Peer reviewed articles (10) Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis Author(s): James Baxter, Sarah Langhorne, Ting Shi, Damien C Tully, Ch Julián Villabona-Arenas, Stéphane Hué, Jan Albert, Andrew Leigh Brown, Katherine E Atkins Published in: Lancet Microbe, 2023, ISSN 2666-5247 Publisher: Elsevier DOI: 10.1016/s2666-5247(22)00327-5 Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves Author(s): Benjamin B. Lindsey, Ch. Julián Villabona-Arenas, Finlay Campbell, Alexander J. Keeley, Matthew D. Parker, Dhruv R. Shah, Helena Parsons, Peijun Zhang, Nishchay Kakkar, Marta Gallis, Benjamin H. Foulkes, Paige Wolverson, Stavroula F. Louka, Stella Christou, Amy State, Katie Johnson, Mohammad Raza, Sharon Hsu, Thibaut Jombart, Anne Cori, Sheffield COVID-19 Genomics Group, The COVID-19 Genomics UK Published in: Nature Communications, 2022, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-022-28681-2 Estimated transmissibility and severity of novel SARS-CoV-2 Variant of Concern 202012/01 in England Author(s): Davies, Nicholas G.; Abbott, Sam; Barnard, Rosanna C.; Jarvis, Christopher I.; Kucharski, Adam J.; Munday, James D.; Pearson, Carl A. B.; Russell, Timothy W.; Tully, Damien C.; Washburne, Alex D.; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry L. M.; van Zandvoort, Kevin; Silverman, Justin D.; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M.; Funk, Sebastian; Jit, Mark; Atkins, Katheri Published in: Science, Issue 10, 2021, ISSN 0036-8075 Publisher: American Association for the Advancement of Science DOI: 10.1101/2020.12.24.20248822 Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan Author(s): Akira Endo, Mitsuo Uchida ,Naoki Hayashi, Yang Liu, Katherine E. Atkins, Adam J. Kucharski, and Sebastian Funk Published in: Proceedings of the National Academy of Sciences, 2021, ISSN 0027-8424 Publisher: National Academy of Sciences DOI: 10.1073/pnas.2112605118 Number of HIV-1 founder variants is determined by the recency of the source partner infection Author(s): Ch. Julián Villabona-Arenas, Matthew Hall, Katrina A. Lythgoe, Stephen G. Gaffney, Roland R. Regoes, Stéphane Hué, Katherine E. Atkins Published in: Science, Issue 369/6499, 2020, Page(s) 103-108, ISSN 0036-8075 Publisher: American Association for the Advancement of Science DOI: 10.1126/science.aba5443 Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study Author(s): Andrew Clark, Mark Jit, Charlotte Warren-Gash, Bruce Guthrie, Harry H X Wang, Stewart W Mercer, Colin Sanderson, Martin McKee, Christopher Troeger, Kanyin L Ong, Francesco Checchi, Pablo Perel, Sarah Joseph, Hamish P Gibbs, Amitava Banerjee, Rosalind M Eggo, Emily S Nightingale, Kathleen O'Reilly, Thibaut Jombart, W John Edmunds, Alicia Rosello, Fiona Yueqian Sun, Katherine E Atkins, Nikos I Bosse Published in: The Lancet Global Health, Issue 8/8, 2020, Page(s) e1003-e1017, ISSN 2214-109X Publisher: Elsevier BV DOI: 10.1016/s2214-109x(20)30264-3 Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks Author(s): 28. ENDO, A. ; CMMID COVID-19 Working Group,; LECLERC, QJ. ; KNIGHT, GM. ; MEDLEY, GF. ; ATKINS, KE. ; FUNK, S. ; KUCHARSKI, AJ Published in: Wellcome Open Research, 2021, ISSN 2398-502X Publisher: Wellcome Trust DOI: 10.12688/wellcomeopenres.16344.3 Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs Author(s): Christian Julian Villabona-Arenas; Stéphane Hué; James A. C. Baxter; Matthew Hall; Katrina A. Lythgoe; John Bradley; Katherine E. Atkins Published in: Proceedings of the National Academy of Sciences, Issue 1, 2022, ISSN 0027-8424 Publisher: National Academy of Sciences DOI: 10.1073/pnas.2210604119 Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools Author(s): Endo, Akira; Uchida, Mitsuo; Liu, Yang; Atkins, Katherine E.; Kucharski, Adam J.; Funk, Sebastian; Abbas, Kaja; van Zandvoort, Kevin; Bosse, Nikos I; Waterlow, Naomi R; Tully, Damien C; Meakin, Sophie R; Quaife, Matthew; Russell, Timothy W; Jit, Mark; Foss, Anna M; Rosello, Alicia; Quilty, Billy J; Prem, Kiesha; Knight, Gwenan M; Abbott, Sam; Klepac, Petra; Brady, Oliver; Pearson, Carl A B; Medley Published in: Proceedings of the National Academy of Sciences, Issue 1, 2022, ISSN 0027-8424 Publisher: National Academy of Sciences DOI: 10.1073/pnas.2203019119 Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England Author(s): James D. Munday, Katharine Sherratt, Sophie Meakin, Akira Endo, Carl A. B. Pearson, Joel Hellewell, Sam Abbott, Nikos I. Bosse, CMMID COVID-19 Working Group, Katherine E. Atkins, Jacco Wallinga, W. John Edmunds, Albert Jan van Hoek, Sebastian Funk Published in: Nature Communications, 2021, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-021-22213-0 Other (2) AtkinsGroup/TransmissionPairs: v1.0 Author(s): Ch. Julian Villabona Arenas, Katherine Atkins, Stephen Gaffney Published in: 2020 Publisher: Zenodo DOI: 10.5281/zenodo.3819343 HIV-1 founder variant multiplicity is determined by the infection stage of the source partner Author(s): Villabona-Arenas CJ, Hall M, Lythgoe KA, Gaffney SG, Regoes RR, Hué S, Atkins KE. Published in: 2019 Publisher: medRxiv DOI: 10.1101/19013524 Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available