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CORDIS - Resultados de investigaciones de la UE
CORDIS

Quantitative T cell Immunology and Immunotherapy

Resultado final

Individual research project descriptions
Bar-coded TCR sequence reads of human memory T cell subsets (blood and BM) (preliminary and final)

Preliminary by M36

Preliminary and validated compartmental model and code of CD8+ T cell infiltration into tumour environments

Preliminary by M36

Reference database of immune receptor alleles in healthy humans
Preliminary and validated mechanistic models of TCR repertoire dynamics and cross-reactivity

Preliminary by M36

Preliminary and validated stochastic model of the signals regulating naive T cell maintenance

Preliminary by M36

Preliminary and validated mathematical model of thymic T cell development from D1.1

Preliminary by M36

Renewal rates and lifespans of human T cell subsets (blood and BM) from D1.4 (preliminary and final)

Preliminary by M36

A review report per WP (draft and final)

A review report per WP draft and final review M36

Preliminary and validated compartmental model of human naive and memory T cell maintenance

Preliminary by M36

Estimates of diversity and uniqueness of memory T cell (blood and BM) repertoires from D2.1

Estimates of diversity and uniqueness of memory T cell blood and BM repertoires from D21

Labelling data of human memory T cell subsets in blood and bone marrow (BM) (preliminary and final)

Preliminary by M36

Personal career development plans (in place and reviews)

Reviews at M7 M19 M31

15 trained ESRs with two secondments each
Preliminary and validated probabilistic model of T cell signal integration

Preliminary by M36

Preliminary and validated computational model and code of impact of anti-cancer treatment on T cells

Preliminary by M36

Preliminary and validated computational model and code of TCR repertoire response to tumour

Preliminary by M36

Two journal articles per ESR
Data set of thymocyte competition (preliminary and final)

Preliminary by M36

Preliminary and validated computational model of the effect of checkpoint inhibitors on T cells in cancer

Preliminary by M36

Publicaciones

Mathematical models of cell signalling in heterogeneous populations

Autores: Léa Sta
Publicado en: 2023
Editor: University of Leeds

Network models of T cell receptor repertoires, cross-reactivity, and viral infection

Autores: Daniel Luque Duque
Publicado en: 2023
Editor: University of Leeds

Stochastic models of cell population dynamics and tick-borne virus transmission

Autores: Giulia Belluccini
Publicado en: 2023
Editor: University of Leeds

Statistical analysis and mathematical modelling of lymphocyte population dynamics

Autores: HoChan Cheon
Publicado en: 2023
Editor: Maynooth University

Counting generations in birth and death processes with competing Erlang and exponential waiting times

Autores: Giulia Belluccini, Martın Lopez-Garcia, Grant Lythe, Carmen Molina-Paris
Publicado en: Scientific Reports, 2022, Página(s) 12:11289, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-022-14202-0

Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses.

Autores: Stephan Wilmes; Polly-Anne Jeffrey; Jonathan Martinez-Fabregas; Maximillian Hafer; Paul K. Fyfe; Elizabeth Pohler; Silvia Gaggero; Martín López-García; Grant Lythe; Charles Taylor; T. Guerrier; David Launay; Suman Mitra; Jacob Piehler; Carmen Molina-París; Carmen Molina-París; Ignacio Moraga
Publicado en: eLife, Edición 1, 2019, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.66014

Innate receptors modulating adaptive T cell responses: KIR-HLA interactions and T cell-mediated control of chronic viral infections

Autores: Mora-Bitria, L., Asquith, B
Publicado en: Immunogenetics, 2023, Página(s) 269–282, ISSN 0093-7711
Editor: Springer Verlag
DOI: 10.1007/s00251-023-01293-w

Why are cell populations maintained via multiple compartments?

Autores: Flavia Feliciangeli, Hanan Dreiwi, Martín López-García, Mario Castro Ponce, Carmen Molina-París and Grant Lythe
Publicado en: Journal of the Royal Society Interface, Edición 17425689, 2022, Página(s) 20220629, ISSN 1742-5689
Editor: The Royal Society
DOI: 10.1098/rsif.2022.0629

Cyton2: A Model of Immune Cell Population Dynamics That Includes Familial Instructional Inheritance

Autores: HoChan Cheon, Andrey Kan, Giulio Prevedello, Simone C. Oostindie, Simon J. Dovedi, Edwin D. Hawkins, Julia M. Marchingo, Susanne Heinzel, Ken R. Duffy, Philip D. Hodgkin
Publicado en: Frontiers in Bioinformatics, Edición 1, 2021, ISSN 2673-7647
Editor: Frontiers Media SA
DOI: 10.3389/fbinf.2021.723337

KIR-HLA interactions extend human CD8+ T cell lifespan in vivo

Autores: Yan Zhang, Ada W.C. Yan, Lies Boelen, Linda Hadcocks, Arafa Salam, Daniel Padrosa Gispert, Loiza Spanos, Laura Mora Bitria, Neda Nemat-Gorgani, James A. Traherne, Chrissy Roberts, Danai Koftori, Graham P. Taylor, Daniel Forton, Paul J. Norman, Steven G.E. Marsh, Robert Busch, Derek C. Macallan, and Becca Asquith
Publicado en: The Journal of Clinical Investigation, Edición 2023;133(12):e169496, 2023, ISSN 0021-9738
Editor: American Society for Clinical Investigation
DOI: 10.1172/jci169496

Quantifying T Cell Cross-Reactivity: Influenza and Coronaviruses

Autores: Jessica Ann Gaevert, Daniel Luque Duque, Grant Lythe, Carmen Molina-París, Paul Glyndwr Thomas
Publicado en: Viruses, Edición 13/9, 2021, Página(s) 1786, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13091786

Pyrimidine de novo synthesis inhibition selectively blocks effector but not memory T cell development

Autores: Stefanie Scherer, Susanne G Oberle, Kristiyan Kanev, Ann-Katrin Gerullis, Ming Wu, Gustavo P de Almeida, Daniel J Puleston, Francesc Baixauli, Lilian Aly, Alessandro Greco, Tamar Nizharadze, Nils B Becker, Madlaina V Hoesslin, Lara V Donhauser, Jacqueline Berner, Talyn Chu, Hayley A McNamara, Zeynep Esencan, Patrick Roelli, Christine Wurmser, Ingo Kleiter, Maria J G T Vehreschild, Christoph A Maye
Publicado en: Nature Communications, Edición 24(3), 2023, Página(s) 501-515, ISSN 1529-2908
Editor: Nature Publishing Group
DOI: 10.1038/s41590-023-01436-x

Resolving Fates and Single-Cell Transcriptomes of Hematopoietic Stem Cell Clones by PolyloxExpress Barcoding

Autores: Weike Pei, Fuwei Shang, Xi Wang, Ann-Kathrin Fanti, Alessandro Greco, Katrin Busch, Kay Klapproth, Qin Zhang, Claudia Quedenau, Sascha Sauer, Thorsten B. Feyerabend, Thomas Höfer, Hans-Reimer Rodewald
Publicado en: Cell Stem Cell, Edición 27/3, 2020, Página(s) 383-395.e8, ISSN 1934-5909
Editor: Cell Press
DOI: 10.1016/j.stem.2020.07.018

Modeling and predicting the overlap of B- and T-cell receptor repertoires in healthy and SARS-CoV-2 infected individuals

Autores: María Ruiz Ortega, Natanael Spisak, Thierry Mora, Aleksandra M. Walczak
Publicado en: PLOS Genetics, 2023, ISSN 1553-7390
Editor: Public Library of Science
DOI: 10.1371/journal.pgen.1010652

Differentiation-based model of hematopoietic stem cell functions and lineage pathways

Autores: Thomas Höfer, Hans-Reimer Rodewald
Publicado en: Blood, Edición 132/11, 2018, Página(s) 1106-1113, ISSN 0006-4971
Editor: American Society of Hematology
DOI: 10.1182/blood-2018-03-791517

Fate of a Naive T Cell: A Stochastic Journey

Autores: Luis de la Higuera, Martín López-García, Mario Castro, Niloufar Abourashchi, Grant Lythe, Carmen Molina-París
Publicado en: Frontiers in Immunology, Edición 10, 2019, ISSN 1664-3224
Editor: Frontiers Media SA
DOI: 10.3389/fimmu.2019.00194

Step‐by‐step comparison of ordinary differential equation and agent‐based approaches to pharmacokinetic‐pharmacodynamic models

Autores: Van Thuy Truong, Paul G. Baverel, Grant D. Lythe, Paolo Vicini, James W. T. Yates, Vincent F. S. Dubois
Publicado en: CPT: Pharmacometrics & Systems Pharmacology, 2021, ISSN 2163-8306
Editor: Nature Publishing Group
DOI: 10.1002/psp4.12703

Fate mapping of hematopoietic stem cells reveals two pathways of native thrombopoiesis

Autores: Mina N. F. Morcos; Congxin Li; Clara M. Munz; Alessandro Greco; Nicole Dressel; Susanne Reinhardt; Katrin Sameith; Andreas Dahl; Nils B. Becker; Axel Roers; Thomas Höfer; Alexander Gerbaulet
Publicado en: Nature Communications, Edición 20411723, 2022, Página(s) 4504, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-022-31914-z

Comparison of blood and lymph node cells after intramuscular injection with HIV envelope immunogens

Autores: Suzanne Day; Charandeep Kaur; Hannah M. Cheeseman; Emily de Groot; Leon R. McFarlane; Maniola Tanaka; Sofia Coelho; Tom Cole; Nana-Marie Lemm; Adrian Lim; Rogier W. Sanders; Becca Asquith; Robin J. Shattock; Katrina M. Pollock
Publicado en: Frontiers in Immunology, 2022, Página(s) 13:991509, ISSN 1664-3224
Editor: Frontiers Media
DOI: 10.3389/fimmu.2022.991509

No evidence that HLA genotype influences the driver mutations that occur in cancer patients

Autores: Noor Kherreh, Siobhán Cleary, Cathal Seoighe
Publicado en: Cancer Immunology, Immunotherapy, 2021, ISSN 0340-7004
Editor: Springer Verlag
DOI: 10.1007/s00262-021-03028-w

RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles

Autores: Barbara Bravi, Jérôme Tubiana, Simona Cocco, Rémi Monasson, Thierry Mora, Aleksandra M. Walczak
Publicado en: Cell Systems, Edición 12/2, 2021, Página(s) 195-202.e9, ISSN 2405-4712
Editor: Cell Press
DOI: 10.1016/j.cels.2020.11.005

Pre-existing humoral immunity to human common cold coronaviruses negatively impacts the protective SARS-CoV-2 antibody response

Autores: Chun-Yang Lin, Joshua Wolf, David C. Brice, Yilun Sun, Macauley Locke, Sean Cherry, Ashley H. Castellaw, Marie Wehenkel, Jeremy Chase Crawford, Veronika I. Zarnitsyna, Daniel Duque, Kim J. Allison, E. Kaitlynn Allen, Scott A. Brown, Alexandra H. Mandarano, Jeremie H. Estepp, The SJTRC Study Team, Charles Taylor 5, Carmen Molina-Paris, Stacey Schultz-Cherry, Li Tang, Paul G. Thomas, Maureen A. McGa
Publicado en: Cell Host and Microbe, 2021, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2021.12.005

Carbon ion radiotherapy eradicates medulloblastomas with chromothripsis in an orthotopic Li-Fraumeni patient-derived mouse model

Autores: Milena Simovic, Michiel Bolkestein, Mahmoud Moustafa, John K L Wong, Verena Körber, Sarah Benedetto, Umar Khalid, Hannah Sophia Schreiber, Manfred Jugold, Andrey Korshunov, Daniel Hübschmann, Norman Mack, Stephan Brons, Pei-Chi Wei, Michael O Breckwoldt, Sabine Heiland, Martin Bendszus, Jürgen Debus, Thomas Höfer, Marc Zapatka, Marcel Kool, Stefan M Pfister, Amir Abdollahi, Aurélie Ernst
Publicado en: Neuro-Oncology, Edición Volume 23, Edición 12, December 2021, 2021, Página(s) 2028–2041, ISSN 1522-8517
Editor: Duke University Press
DOI: 10.1093/neuonc/noab127

Current estimates of T cell kinetics in humans

Autores: Derek C. Macallan, Robert Busch, Becca Asquith
Publicado en: Current Opinion in Systems Biology, Edición 18, 2019, Página(s) 77-86, ISSN 2452-3100
Editor: Elsevier Ltd
DOI: 10.1016/j.coisb.2019.10.002

COGNITION: a prospective precision oncology trial for patients with early breast cancer at high risk following neoadjuvant chemotherapy

Autores: C. Pixberg, M. Zapatka, M. Hlevnjak, S. Benedetto, J.P. Suppelna, J. Heil, K. Smetanay, L. Michel, C. Fremd, V. Körber, M. Rübsam, L. Buschhorn, S. Heublein, B. Schäfgen, M. Golatta, C. Gomez, A. von Au, M. Wallwiener, S. Wolf, N. Dikow, C. Schaaf, E. Gutjahr, M. Allgäuer, A. Stenzinger, K. Pfütze, R. Kirsten, D. Hübschmann, H.-P. Sinn, D. Jäger, A. Trumpp, R. Schlenk, T. Höfer, V. Thewes,
Publicado en: ESMO Open, 2022, ISSN 2059-7029
Editor: Elsevier
DOI: 10.1016/j.esmoop.2022.100637

Stochastic modelling of the T cell repertoire with epitope affinity

Autores: Daniel F Luque Duque, Carmen Molina-Paris, Grant Lythe, Martin Lopez Garcia, Paul Glyndwr Thomas and Jessica Gaevert
Publicado en: The Journal of Immunology, Edición 204 (1 Supplement), 2020, Página(s) 94.18, ISSN 1550-6606
Editor: The American Association of Immunologists, Inc.

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