Deliverables
Methods and prototype software for obtaining reproducible segmentations and assessing their statistical confidence
Software for model-based 2D/3D segmentation with physical priorsPrototype software for model-based 2D and 3D segmentation of voxel volumes employing physical priors
Tool simulating data from physical model priorsTool simulating both projection and reconstructed image data from physical model
Prototype software for mesh-based 2D and 3D segmentation and reconstructionBasic Big Data platform
Training Materials for the workflow
Training Materials for the workflow framework
Implementation for limited angle projection data in 3DSoftware implementation for limited angle projection data in 3D
Fast alignment code and docsFast image alignment code and documentation
Training Materials for the Big Data platformSoftware implementation for 3D ptychographic inversion
Fast Reconstruction Code and Docs
Fast reconstruction code and documentation for Task 3.1
Basic workflow framework1st Summer School (DTU)
3rd workshop3rd workshop (UL)
2nd workshop2nd workshop (FEI SAS)
Job Fair4th workshop
4th workshop (AP2K)
5th workshop5th workshop (4Quant)
2nd Summer School2nd Summer School (UA)
1st workshop1st workshop (CWI/UA)
Organization of the Outreach ConferenceAdvertisement of vacancies
6th workshop
6th workshop (CNRS/UBx)
Optimized software implementation for omni-directional scattering tomographyKick off meeting
Winter School
Winter School (AP2K)
Multiscale finite element modelling procedure
Protocol to acquire tilt series for multi-modal tomographyProtocol to acquire tilt series for multimodal tomography combination of electron diffraction HAADFSTEM EELS and EDX
ESR11 PhD ThesisESR11 DTU PhD thesis Physical model priors for tomogram segmentation
ESR2 PhD thesisESR2 UA PhD thesis Novel acquisition schemes for electron tomography in association with WP2 and WP3
ESR13 PhD ThesisESR13 UoM PhD thesis Multiscale quantification of damage in composite structures
ESR10 PhD ThesisESR10 AP2K PhD thesis 2D3D multimodal analysis for XRay security applications
Protocol for the acquisition of omni-directional scattering tomographyESR6 PhD Thesis
ESR6 CWIUL PhD thesis Ultrafast Tomographic Reconstruction in association with WP1 and WP2
ESR14 PhD ThesisESR14 CNRS UBx PhD thesis Reactive transport in porous media A multiscale imaging and modelling approach
ESR8 PhD ThesisESR8 BAM PhD thesis A 3D implementation of a trained algorithm for reconstruction from limited angle projection data M39
Protocol to acquire tilt series for electron tomography using ultra-sensitive detectorsESR12 PhD Thesis
ESR12 DTU PhD thesis Segmentation from projections
ESR1 PhD thesisESR1 PSI PhD thesis Time resolved omnidirectional scattering tomography
ESR9 PhD ThesisESR9 DTU PhD thesis 3D inversion of ptychographic tomography data in association with WP1 and WP2
Theoretical description of scattering signal dependenciesGeneral algorithm for the coupled numerical model and super-resolution
ESR4 PhD Thesis
ESR4 UCPH PhD thesis Automated data analyses workflows for tomography data in association with WP1 and WP3
Experimental setup at the TOMCAT beamline for omni-directional scatteringExperimental setup at the TOMCAT beamline for omnidirectional scattering tomography compatible with singleshot acquisition
ESR5 PhD ThesisESR5 UCPH PhD thesis A Big Data Platform for storing and analyzing tomography data in association with WP1 and WP3
Promotional materials (website, flyer, social media account) created and actively used
Publications
Author(s):
Jakeoung Koo
Published in:
2021
Publisher:
Technical University of Denmark
Author(s):
Abdellatif Saadaldin
Published in:
2022
Publisher:
University of Bordeaux
Author(s):
Azat Slyamov
Published in:
2021
Publisher:
Technical University of Denmark
Author(s):
Elise Otterlei Brenne
Published in:
2021
Publisher:
DTU Energy
Author(s):
Jisoo Kim
Published in:
2022
Publisher:
ETH Zurich
DOI:
10.3929/ethz-b-000548789
Author(s):
Auenhammer, Robert
Published in:
X-ray computer tomography based numerical modelling of fibre reinforced composites, 2021, ISSN 1652-8565
Publisher:
Chalmers University of Technology
Author(s):
David Marchant
Published in:
2021
Publisher:
University of Copenhagen
Author(s):
Doniyor Jumanazarov
Published in:
2021, Page(s) 158
Publisher:
Department of Physics, Technical University of Denmark
Author(s):
Rasmus Munk
Published in:
2021
Publisher:
University of Copenhagen
Author(s):
Sotirios Magkos
Published in:
2022
Publisher:
Universität Potsdam
DOI:
10.25932/publishup-57278
Author(s):
S. Hosseinnejad, E.G.T. Bosch, H. Kohr, I. Lazić, V. Zharinov, E. Franken, J. Sijbers, J. De
Beenhouwer
Published in:
2021 Microscopy Conference, 2021
Publisher:
Universität Regensburg
Author(s):
Doniyor Jumanazarov, Jakeoung Koo, Henning F. Poulsen, Ulrik L. Olsen, Mihai Iovea
Published in:
Journal of Medical Imaging, 2022
Publisher:
SPIE
Author(s):
Coban, Sophia Bethany; Andriiashen, Vladyslav; Ganguly, Poulami Somanya; van Eijnatten, Maureen; Batenburg, Kees Joost
Published in:
2020
Publisher:
Leiden Institute of Advanced Computer Science
DOI:
10.48550/arxiv.2012.13346
Author(s):
Doniyor Jumanazarov, Jakeoung Koo, Jan Kehres, Henning F Poulsen, Ulrik L Olsen, Mihai Iovea
Published in:
Materials Characterization, 2022, ISSN 1044-5803
Publisher:
Elsevier BV
DOI:
10.1016/j.matchar.2022.111864
Author(s):
Jisoo Kim, Azat Slyamov, Erik Lauridsen, Mie Birkbak, Tiago Ramos, Federica Marone, Jens W. Andreasen, Marco Stampanoni, Matias Kagias
Published in:
Composites Part B: Engineering, 2022, ISSN 1359-8368
Publisher:
Pergamon Press Ltd.
DOI:
10.1016/j.compositesb.2022.109634
Author(s):
Munk, Rasmus; Vinter, Brian
Published in:
Communicating Process Architectures 2017 and 2018, WoTUG-39 and WoTUG- 40 - Proceedings of CPA 2017 (WoTUG-39) and Proceedings of CPA 2018 (WoTUG-40), 2019, Page(s) 323-333, ISSN 1383-7575
Publisher:
IOS Press
DOI:
10.3233/978-1-61499-949-2-323
Author(s):
Elise O. Brenne, Vedrana A. Dahl, Peter S. Jørgensen
Published in:
Materials Characterization, Issue 171, 2021, Page(s) 110796, ISSN 1044-5803
Publisher:
Elsevier BV
DOI:
10.1016/j.matchar.2020.110796
Author(s):
Auenhammer, R.M., Jeppesen, N., Mikkelsen, L.P., Dahl, V.A., Asp, L.E.
Published in:
Software Impacts, Issue 11, 2022, Page(s) 100216, ISSN 2665-9638
Publisher:
Elsevier
DOI:
10.1016/j.simpa.2021.100216
Author(s):
Doniyor Jumanazarov, Jakeoung Koo, Matteo Busi, Henning F. Poulsen, Ulrik L. Olsen, Mihai Iovea
Published in:
NDT & E International, Issue 116, 2020, Page(s) 102336, ISSN 0963-8695
Publisher:
Elsevier BV
DOI:
10.1016/j.ndteint.2020.102336
Author(s):
Auenhammer, R.M., Jeppesen, N., Mikkelsen, L.P., Dahl, V.A., Blinzler, B.J., Asp, L.E.
Published in:
Composites Science and Technology, Issue 224, 2022, Page(s) 109458, ISSN 0266-3538
Publisher:
Pergamon Press Ltd.
DOI:
10.1016/j.compscitech.2022.109458
Author(s):
Anuj Prajapati, Ali Chirazi, Lars P. Mikkelsen, Timothy Burnett, Philip J. Withers
Published in:
IOP Conference Series: Materials Science and Engineering, Issue 942, 2020, Page(s) 012039, ISSN 1757-899X
Publisher:
IOP Conference Series: Materials Science and Engineering
DOI:
10.1088/1757-899x/942/1/012039
Author(s):
Koo Jakeoung,
Dahl Anders,
Bærentzen J.Andreas,
Chen Qiongyang,
Bals Sara,
Dahl Vedrana
Published in:
Ultramicroscopy, Issue 224, 2021, Page(s) 113239, ISSN 0304-3991
Publisher:
Elsevier BV
DOI:
10.1016/j.ultramic.2021.113239
Author(s):
Poulami Somanya Ganguly, Daniël M. Pelt, Doga Gürsoy, Francesco de Carlo, K. Joost Batenburg
Published in:
Journal of Synchrotron Radiation, Issue 28/5, 2021, Page(s) 1583-1597, ISSN 1600-5775
Publisher:
Wiley
DOI:
10.1107/s1600577521007153
Author(s):
Jakeoung Koo; Anders Bjorholm Dahl; Vedrana Anderson Dahl
Published in:
IEEE Transactions on Computational Imaging, Issue 25730436, 2021, Page(s) 151-163, ISSN 2573-0436
Publisher:
IEEE
DOI:
10.1109/tci.2021.3052034
Author(s):
Abdellatif Saadaldin; Azat M. Slyamov; Michael E. Stuckelberger; Peter S. Jørgensen; Christian Rein; Mariana Mar Lucas; Tiago Ramos; Angel Rodriguez-Fernandez; Dominique Bernard; Jens W. Andreasen
Published in:
Faraday Discussions, 2022, ISSN 1364-5498
Publisher:
Royal Society of Chemistry
DOI:
10.1039/d2fd00044j
Author(s):
Anuj Prajapati, Stuart Morse, Ali Chirazi, Timothy Burnett, Philip J. Withers
Published in:
Data in Brief, Issue 37, 2021, Page(s) 107157, ISSN 2352-3409
Publisher:
Elsevier BV
DOI:
10.1016/j.dib.2021.107157
Author(s):
Robert M. Auenhammer, Lars P. Mikkelsen, Leif E. Asp, Brina J. Blinzler
Published in:
Data in Brief, Issue 33, 2020, Page(s) 106518, ISSN 2352-3409
Publisher:
Elsevier BV
DOI:
10.1016/j.dib.2020.106518
Author(s):
Robert M. Auenhammer, Lars P. Mikkelsen, Leif E. Asp, Brina J. Blinzler
Published in:
Composite Structures, Issue 256, 2021, Page(s) 113136, ISSN 0263-8223
Publisher:
Elsevier BV
DOI:
10.1016/j.compstruct.2020.113136
Author(s):
Kim, J., Kagias, M., Marone, F., Stampanoni, M.
Published in:
Scientific Reports, 2021, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/s41598-021-02467-w
Author(s):
Thomas Altantzis, Ivan Lobato, Annick De Backer, Armand Béché, Yang Zhang, Shibabrata Basak, Mauro Porcu, Qiang Xu, Ana Sánchez-Iglesias, Luis M. Liz-Marzán, Gustaaf Van Tendeloo, Sandra Van Aert, Sara Bals
Published in:
Nano Letters, Issue 19/1, 2018, Page(s) 477-481, ISSN 1530-6984
Publisher:
American Chemical Society
DOI:
10.1021/acs.nanolett.8b04303
Author(s):
Hans Vanrompay, Eva Bladt, Wiebke Albrecht, Armand Béché, Marina Zakhozheva, Ana Sánchez-Iglesias, Luis M. Liz-Marzán, Sara Bals
Published in:
Nanoscale, Issue 10/48, 2018, Page(s) 22792-22801, ISSN 2040-3364
Publisher:
Royal Society of Chemistry
DOI:
10.1039/c8nr08376b
Author(s):
Jisoo Kim, Matias Kagias, Federica Marone, Marco Stampanoni
Published in:
Applied Physics Letters, Issue 116/13, 2020, Page(s) 134102, ISSN 0003-6951
Publisher:
American Institute of Physics
DOI:
10.1063/1.5145361
Author(s):
Johannes Leuschner, Maximilian Schmidt, Poulami Somanya Ganguly, Vladyslav Andriiashen, Sophia Bethany Coban, Alexander Denker, Dominik Bauer, Amir Hadjifaradji, Kees Joost Batenburg, Peter Maass, Maureen van Eijnatten
Published in:
Journal of Imaging, Issue 7/3, 2021, Page(s) 44, ISSN 2313-433X
Publisher:
MDPI
DOI:
10.3390/jimaging7030044
Author(s):
Sotirios Magkos, Andreas Kupsch, Giovanni Bruno
Published in:
Review of Scientific Instruments, Issue 91/10, 2020, Page(s) 103107, ISSN 0034-6748
Publisher:
American Institute of Physics
DOI:
10.1063/5.0013111
Author(s):
Allard A. Hendriksen; Dirk Schut; Willem Jan Palenstijn; Nicola Viganò; Jisoo Kim; Daniël M. Pelt; Tristan van Leeuwen; K. Joost Batenburg
Published in:
Optics Express, 2021, ISSN 1094-4087
Publisher:
Optical Society of America
DOI:
10.1364/oe.439909
Author(s):
Robert M. Auenhammer; Robert M. Auenhammer; Lars Pilgaard Mikkelsen; Leif Asp; Brina J. Blinzler
Published in:
Data in Brief, Vol 33, Iss , Pp 106518- (2020), Issue 3, 2020, ISSN 2352-3409
Publisher:
Elsevier BV
DOI:
10.1016/j.dib.2020.106518
Author(s):
Sotirios Magkos, Andreas Kupsch, Giovanni Bruno
Published in:
Journal of Imaging, Issue 7/8, 2021, Page(s) 147, ISSN 2313-433X
Publisher:
MDPI
DOI:
10.3390/jimaging7080147
Author(s):
P.S. Ganguly, F. Lucka, H. Kohr, E. Franken, H.J. Hupkes, K.J. Batenburg
Published in:
IEEE Transactions on Computational Imaging, Issue 23339403, 2022, Page(s) 651-665, ISSN 2333-9403
Publisher:
IEEE
DOI:
10.1109/tci.2022.3194719
Author(s):
Johannes Hertrich, Dang-Phuong-Lan Nguyen, Jean-Francois Aujol, Dominique Bernard, Yannick Berthoumieu, Abdellatif Saadaldin, Gabriele Steidl
Published in:
Inverse Problems & Imaging, Issue 0/0, 2021, ISSN 1930-8337
Publisher:
American Institute of Mathematical Sciences
DOI:
10.3934/ipi.2021053
Author(s):
Jisoo Kim; Daniël M. Pelt; Matias Kagias; Marco Stampanoni; K. Joost Batenburg; Federica Marone
Published in:
Physical Review Applied, Issue 23317019, 2022, ISSN 2331-7019
Publisher:
American Physical Society
DOI:
10.1103/physrevapplied.18.014043
Author(s):
R M Auenhammer, L P Mikkelsen, L E Asp, B J Blinzler
Published in:
IOP Conference Series: Materials Science and Engineering, Issue 942, 2020, Page(s) 012038, ISSN 1757-899X
Publisher:
IOP Conference Series: Materials Science and Engineering
DOI:
10.1088/1757-899x/942/1/012038
Author(s):
Robert M. Auenhammer; Robert M. Auenhammer; Lars Pilgaard Mikkelsen; Leif Asp; Brina J. Blinzler
Published in:
Auenhammer , R M , Mikkelsen , L P , Asp , L E & Blinzler , B J 2021 , ' Automated X-ray computer tomography segmentation method for finite element analysis of non-crimp fabric reinforced composites ' , Composite Structures , vol. 256 , 113136 . https://doi.org/10.1016/j.compstruct.2020.113136, Issue 1, 2020, ISSN 0263-8223
Publisher:
Elsevier BV
DOI:
10.1016/j.compstruct.2020.113136
Author(s):
P.S. Ganguly, F. Lucka, H.J. Hupkes, K.J. Batenburg
Published in:
Combinatorial Image Analysis, 20th International Workshop, IWCIA 2020, Novi Sad, Serbia, July 16–18, 2020, Issue Lecture Notes in Computer Science Vol.12148, 2020, Page(s) 45-61, ISBN 978-3-030-51002-2
Publisher:
Springer
DOI:
10.1007/978-3-030-51002-2
Author(s):
Jakeoung Koo, Elise Otterlei Brenne, Anders Bjorholm Dahl, Vedrana Andersen Dahl
Published in:
Proceedings of the Northern Lights Deep Learning Workshop 2021, 2021
Publisher:
Septentrio Academic Publishing
DOI:
10.7557/18.5676
Author(s):
Rasmus Munk, David Marchant and Brian Vinter
Published in:
Proceedings of the 8th Workshop on Cloud Technologies in Education (CTE2020), 2020
Publisher:
Proceedings of the 8th Workshop on Cloud Technologies in Education (CTE2020)
Author(s):
Doniyor Jumanazarov, Ja-Keoung Koo, Henning F. Poulsen, Ulrik L. Olsen, Mihai Iovea
Published in:
Quantum Optics and Photon Counting 2021, Issue 1, 2021, Page(s) 15, ISBN 9781510643772
Publisher:
SPIE
DOI:
10.1117/12.2589290
Author(s):
J. Rimpeläinen, S. Bazrafkan, J. Sijbers, J. De Beenhouwer
Published in:
(2019) MC 2019 Berlin Microscopy Conference - Abstracts. Regensburg - IM7.004, 2019, Page(s) 660-661
Publisher:
Deutsche Gesellschaft fur elektronenmikroskopie
Author(s):
David Marchant, Rasmus Munk, Elise O. Brenne, Brian Vinter
Published in:
2020 IEEE/ACM 2nd Annual Workshop on Extreme-scale Experiment-in-the-Loop Computing (XLOOP), 2020, Page(s) 23-28, ISBN 978-1-6654-2282-6
Publisher:
IEEE
DOI:
10.1109/xloop51963.2020.00009
Author(s):
Munk, Rasmus; Brian Vinter; Zdenek Matej; Artur Barczyk
Published in:
Book of Abstracts of Cloud Services for Synchronisation and Sharing (CS3) 2020 - the 6th Cloud Synchronization & Sharing Conference, 2020
Publisher:
Cloud Services for Synchronisation and Sharing (CS3)
Author(s):
David Marchant, Carl-Johannes Johnsen, Brian Vinter, Kenneth Skovhede
Published in:
2019 IEEE/ACM Workshop on Education for High-Performance Computing (EduHPC), 2019, Page(s) 49-57, ISBN 978-1-7281-5975-1
Publisher:
IEEE
DOI:
10.1109/eduhpc49559.2019.00012
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