MUltiscale, Multimodal and Multidimensional imaging for EngineeRING

Risultati finali

Obtaining reproducible segmentations and assessing their statistical confidence

Methods and prototype software for obtaining reproducible segmentations and assessing their statistical confidence

Software for model-based 2D/3D segmentation with physical priors

Prototype software for model-based 2D and 3D segmentation of voxel volumes employing physical priors

Tool simulating data from physical model priors

Tool simulating both projection and reconstructed image data from physical model

Prototype software for mesh-based 2D and 3D segmentation and reconstruction
Basic Big Data platform
Training Materials for the workflow

Training Materials for the workflow framework

Implementation for limited angle projection data in 3D

Software implementation for limited angle projection data in 3D

Fast alignment code and docs

Fast image alignment code and documentation

Training Materials for the Big Data platform
Software implementation for 3D ptychographic inversion
Fast Reconstruction Code and Docs

Fast reconstruction code and documentation for Task 3.1

Basic workflow framework

1st Summer School

1st Summer School (DTU)

3rd workshop

3rd workshop (UL)

2nd workshop

2nd workshop (FEI SAS)

Job Fair
4th workshop

4th workshop (AP2K)

5th workshop

5th workshop (4Quant)

2nd Summer School

2nd Summer School (UA)

1st workshop

1st workshop (CWI/UA)

Organization of the Outreach Conference
Advertisement of vacancies
6th workshop

6th workshop (CNRS/UBx)

Optimized software implementation for omni-directional scattering tomography
Kick off meeting
Winter School

Winter School (AP2K)

Multi-scale finite element modelling procedure

Multiscale finite element modelling procedure

Protocol to acquire tilt series for multi-modal tomography

Protocol to acquire tilt series for multimodal tomography combination of electron diffraction HAADFSTEM EELS and EDX

ESR11 PhD Thesis

ESR11 DTU PhD thesis Physical model priors for tomogram segmentation

ESR2 PhD thesis

ESR2 UA PhD thesis Novel acquisition schemes for electron tomography in association with WP2 and WP3

ESR13 PhD Thesis

ESR13 UoM PhD thesis Multiscale quantification of damage in composite structures

ESR10 PhD Thesis

ESR10 AP2K PhD thesis 2D3D multimodal analysis for XRay security applications

Protocol for the acquisition of omni-directional scattering tomography
ESR6 PhD Thesis

ESR6 CWIUL PhD thesis Ultrafast Tomographic Reconstruction in association with WP1 and WP2

ESR14 PhD Thesis

ESR14 CNRS UBx PhD thesis Reactive transport in porous media A multiscale imaging and modelling approach

ESR8 PhD Thesis

ESR8 BAM PhD thesis A 3D implementation of a trained algorithm for reconstruction from limited angle projection data M39

Protocol to acquire tilt series for electron tomography using ultra-sensitive detectors
ESR12 PhD Thesis

ESR12 DTU PhD thesis Segmentation from projections

ESR1 PhD thesis

ESR1 PSI PhD thesis Time resolved omnidirectional scattering tomography

ESR9 PhD Thesis

ESR9 DTU PhD thesis 3D inversion of ptychographic tomography data in association with WP1 and WP2

Theoretical description of scattering signal dependencies
General algorithm for the coupled numerical model and super-resolution
ESR4 PhD Thesis

ESR4 UCPH PhD thesis Automated data analyses workflows for tomography data in association with WP1 and WP3

Experimental setup at the TOMCAT beamline for omni-directional scattering

Experimental setup at the TOMCAT beamline for omnidirectional scattering tomography compatible with singleshot acquisition

ESR5 PhD Thesis

ESR5 UCPH PhD thesis A Big Data Platform for storing and analyzing tomography data in association with WP1 and WP3

Promotional materials (website, flyer, social media account) created

Promotional materials (website, flyer, social media account) created and actively used

Pubblicazioni

Tomographic Segmentation from Limited Projection Data

Autori: Jakeoung Koo
Pubblicato in: 2021
Editore: Technical University of Denmark

Two examples of multi-scale numerical modelling combined with advanced X-ray based experiments: multi-scale imaging for reactive transport in porous media and X-ray beam induced current (XBIC)

Autori: Abdellatif Saadaldin
Pubblicato in: 2022
Editore: University of Bordeaux

Multi-modal Coherent X--ray Imaging and Tomography of Functional Materials

Autori: Azat Slyamov
Pubblicato in: 2021
Editore: Technical University of Denmark

Statistical Methods for Quantification and Segmentation of Material Microstructure from 3D X-ray Tomography Image Data

Autori: Elise Otterlei Brenne
Pubblicato in: 2021
Editore: DTU Energy

Towards Time-resolved X-ray Scattering Tensor Tomography

Autori: Jisoo Kim
Pubblicato in: 2022
Editore: ETH Zurich
DOI: 10.3929/ethz-b-000548789

X-ray computer tomography based numerical modelling of fibre reinforced composites

Autori: Auenhammer, Robert
Pubblicato in: X-ray computer tomography based numerical modelling of fibre reinforced composites, 2021, ISSN 1652-8565
Editore: Chalmers University of Technology

MEOW - Enabling Dynamic Scheduling of Scientific Analysis

Autori: David Marchant
Pubblicato in: 2021
Editore: University of Copenhagen

Spectrally joint reconstruction and material classification from multi-energy CT

Autori: Doniyor Jumanazarov
Pubblicato in: 2021, Pagina/e 158
Editore: Department of Physics, Technical University of Denmark

Grid of Clouds

Autori: Rasmus Munk
Pubblicato in: 2021
Editore: University of Copenhagen

Iterative reconstruction from under-sampled Computed Tomography data

Autori: Sotirios Magkos
Pubblicato in: 2022
Editore: Universität Potsdam
DOI: 10.25932/publishup-57278

3D atomic resolution tomography from iDPC-STEM images using multiple atommodel prior.

Autori: S. Hosseinnejad, E.G.T. Bosch, H. Kohr, I. Lazić, V. Zharinov, E. Franken, J. Sijbers, J. De Beenhouwer
Pubblicato in: 2021 Microscopy Conference, 2021
Editore: Universität Regensburg

Significance of the spectral correction of photon counting detector response in material classification from spectral x-ray CT

Autori: Doniyor Jumanazarov, Jakeoung Koo, Henning F. Poulsen, Ulrik L. Olsen, Mihai Iovea
Pubblicato in: Journal of Medical Imaging, 2022
Editore: SPIE

Parallel-beam X-ray CT datasets of apples with internal defects and label balancing for machine learning

Autori: Coban, Sophia Bethany; Andriiashen, Vladyslav; Ganguly, Poulami Somanya; van Eijnatten, Maureen; Batenburg, Kees Joost
Pubblicato in: 2020
Editore: Leiden Institute of Advanced Computer Science
DOI: 10.48550/arxiv.2012.13346

Material classification from sparse spectral X-ray CT using vectorial total variation based on L infinity norm

Autori: Doniyor Jumanazarov, Jakeoung Koo, Jan Kehres, Henning F Poulsen, Ulrik L Olsen, Mihai Iovea
Pubblicato in: Materials Characterization, 2022, ISSN 1044-5803
Editore: Elsevier BV
DOI: 10.1016/j.matchar.2022.111864

Macroscopic mapping of microscale fibers in freeform injection molded fiber-reinforced composites using X-ray scattering tensor tomography

Autori: Jisoo Kim, Azat Slyamov, Erik Lauridsen, Mie Birkbak, Tiago Ramos, Federica Marone, Jens W. Andreasen, Marco Stampanoni, Matias Kagias
Pubblicato in: Composites Part B: Engineering, 2022, ISSN 1359-8368
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.compositesb.2022.109634

MUMMERING Platform Idea’s & Ubiquitous Data Analysis

Autori: Munk, Rasmus; Vinter, Brian
Pubblicato in: Communicating Process Architectures 2017 and 2018, WoTUG-39 and WoTUG- 40 - Proceedings of CPA 2017 (WoTUG-39) and Proceedings of CPA 2018 (WoTUG-40), 2019, Pagina/e 323-333, ISSN 1383-7575
Editore: IOS Press
DOI: 10.3233/978-1-61499-949-2-323

A physical model for microstructural characterization and segmentation of 3D tomography data

Autori: Elise O. Brenne, Vedrana A. Dahl, Peter S. Jørgensen
Pubblicato in: Materials Characterization, Numero 171, 2021, Pagina/e 110796, ISSN 1044-5803
Editore: Elsevier BV
DOI: 10.1016/j.matchar.2020.110796

X-ray computed tomography data structure tensor orientation mapping for finite element models – STXAE

Autori: Auenhammer, R.M., Jeppesen, N., Mikkelsen, L.P., Dahl, V.A., Asp, L.E.
Pubblicato in: Software Impacts, Numero 11, 2022, Pagina/e 100216, ISSN 2665-9638
Editore: Elsevier
DOI: 10.1016/j.simpa.2021.100216

System-independent material classification through X-ray attenuation decomposition from spectral X-ray CT

Autori: Doniyor Jumanazarov, Jakeoung Koo, Matteo Busi, Henning F. Poulsen, Ulrik L. Olsen, Mihai Iovea
Pubblicato in: NDT & E International, Numero 116, 2020, Pagina/e 102336, ISSN 0963-8695
Editore: Elsevier BV
DOI: 10.1016/j.ndteint.2020.102336

Robust numerical analysis of fibrous composites from X-ray computed tomography image data enabling low resolutions

Autori: Auenhammer, R.M., Jeppesen, N., Mikkelsen, L.P., Dahl, V.A., Blinzler, B.J., Asp, L.E.
Pubblicato in: Composites Science and Technology, Numero 224, 2022, Pagina/e 109458, ISSN 0266-3538
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.compscitech.2022.109458

Observing the evolution of fatigue damage and associated strain fields in a correlative, multiscale 3D time-lapse study of quasi-unidirectional glass fibre composites

Autori: Anuj Prajapati, Ali Chirazi, Lars P. Mikkelsen, Timothy Burnett, Philip J. Withers
Pubblicato in: IOP Conference Series: Materials Science and Engineering, Numero 942, 2020, Pagina/e 012039, ISSN 1757-899X
Editore: IOP Conference Series: Materials Science and Engineering
DOI: 10.1088/1757-899x/942/1/012039

Shape from projections via differentiable forward projector for computed tomography

Autori: Koo Jakeoung, Dahl Anders, Bærentzen J.Andreas, Chen Qiongyang, Bals Sara, Dahl Vedrana
Pubblicato in: Ultramicroscopy, Numero 224, 2021, Pagina/e 113239, ISSN 0304-3991
Editore: Elsevier BV
DOI: 10.1016/j.ultramic.2021.113239

Improving reproducibility in synchrotron tomography using implementation-adapted filters

Autori: Poulami Somanya Ganguly, Daniël M. Pelt, Doga Gürsoy, Francesco de Carlo, K. Joost Batenburg
Pubblicato in: Journal of Synchrotron Radiation, Numero 28/5, 2021, Pagina/e 1583-1597, ISSN 1600-5775
Editore: Wiley
DOI: 10.1107/s1600577521007153

DALM, Deformable Attenuation-Labeled Mesh for Tomographic Reconstruction and Segmentation

Autori: Jakeoung Koo; Anders Bjorholm Dahl; Vedrana Anderson Dahl
Pubblicato in: IEEE Transactions on Computational Imaging, Numero 25730436, 2021, Pagina/e 151-163, ISSN 2573-0436
Editore: IEEE
DOI: 10.1109/tci.2021.3052034

Multi-modal characterization of kesterite thin-film solar cells: experimental results and numerical interpretation

Autori: Abdellatif Saadaldin; Azat M. Slyamov; Michael E. Stuckelberger; Peter S. Jørgensen; Christian Rein; Mariana Mar Lucas; Tiago Ramos; Angel Rodriguez-Fernandez; Dominique Bernard; Jens W. Andreasen
Pubblicato in: Faraday Discussions, 2022, ISSN 1364-5498
Editore: Royal Society of Chemistry
DOI: 10.1039/d2fd00044j

Complementary time-lapse datasets of x-ray computed tomography and real-time strain mapping for an ex-situ study of non-crimp glass fibre composites under fatigue loading

Autori: Anuj Prajapati, Stuart Morse, Ali Chirazi, Timothy Burnett, Philip J. Withers
Pubblicato in: Data in Brief, Numero 37, 2021, Pagina/e 107157, ISSN 2352-3409
Editore: Elsevier BV
DOI: 10.1016/j.dib.2021.107157

Dataset of non-crimp fabric reinforced composites for an X-ray computer tomography aided engineering process

Autori: Robert M. Auenhammer, Lars P. Mikkelsen, Leif E. Asp, Brina J. Blinzler
Pubblicato in: Data in Brief, Numero 33, 2020, Pagina/e 106518, ISSN 2352-3409
Editore: Elsevier BV
DOI: 10.1016/j.dib.2020.106518

Automated X-ray computer tomography segmentation method for finite element analysis of non-crimp fabric reinforced composites

Autori: Robert M. Auenhammer, Lars P. Mikkelsen, Leif E. Asp, Brina J. Blinzler
Pubblicato in: Composite Structures, Numero 256, 2021, Pagina/e 113136, ISSN 0263-8223
Editore: Elsevier BV
DOI: 10.1016/j.compstruct.2020.113136

Fast acquisition protocol for X-ray scattering tensor tomography

Autori: Kim, J., Kagias, M., Marone, F., Stampanoni, M.
Pubblicato in: Scientific Reports, 2021, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-021-02467-w

Three-Dimensional Quantification of the Facet Evolution of Pt Nanoparticles in a Variable Gaseous Environment

Autori: Thomas Altantzis, Ivan Lobato, Annick De Backer, Armand Béché, Yang Zhang, Shibabrata Basak, Mauro Porcu, Qiang Xu, Ana Sánchez-Iglesias, Luis M. Liz-Marzán, Gustaaf Van Tendeloo, Sandra Van Aert, Sara Bals
Pubblicato in: Nano Letters, Numero 19/1, 2018, Pagina/e 477-481, ISSN 1530-6984
Editore: American Chemical Society
DOI: 10.1021/acs.nanolett.8b04303

3D characterization of heat-induced morphological changes of Au nanostars by fast in situ electron tomography

Autori: Hans Vanrompay, Eva Bladt, Wiebke Albrecht, Armand Béché, Marina Zakhozheva, Ana Sánchez-Iglesias, Luis M. Liz-Marzán, Sara Bals
Pubblicato in: Nanoscale, Numero 10/48, 2018, Pagina/e 22792-22801, ISSN 2040-3364
Editore: Royal Society of Chemistry
DOI: 10.1039/c8nr08376b

X-ray scattering tensor tomography with circular gratings

Autori: Jisoo Kim, Matias Kagias, Federica Marone, Marco Stampanoni
Pubblicato in: Applied Physics Letters, Numero 116/13, 2020, Pagina/e 134102, ISSN 0003-6951
Editore: American Institute of Physics
DOI: 10.1063/1.5145361

Quantitative Comparison of Deep Learning-Based Image Reconstruction Methods for Low-Dose and Sparse-Angle CT Applications

Autori: Johannes Leuschner, Maximilian Schmidt, Poulami Somanya Ganguly, Vladyslav Andriiashen, Sophia Bethany Coban, Alexander Denker, Dominik Bauer, Amir Hadjifaradji, Kees Joost Batenburg, Peter Maass, Maureen van Eijnatten
Pubblicato in: Journal of Imaging, Numero 7/3, 2021, Pagina/e 44, ISSN 2313-433X
Editore: MDPI
DOI: 10.3390/jimaging7030044

Direct Iterative Reconstruction of Computed Tomography Trajectories Reconstruction from limited number of projections with DIRECTT

Autori: Sotirios Magkos, Andreas Kupsch, Giovanni Bruno
Pubblicato in: Review of Scientific Instruments, Numero 91/10, 2020, Pagina/e 103107, ISSN 0034-6748
Editore: American Institute of Physics
DOI: 10.1063/5.0013111

Tomosipo: fast, flexible, and convenient 3D tomography for complex scanning geometries in Python.

Autori: Allard A. Hendriksen; Dirk Schut; Willem Jan Palenstijn; Nicola Viganò; Jisoo Kim; Daniël M. Pelt; Tristan van Leeuwen; K. Joost Batenburg
Pubblicato in: Optics Express, 2021, ISSN 1094-4087
Editore: Optical Society of America
DOI: 10.1364/oe.439909

Dataset of non-crimp fabric reinforced composites for an X-ray computer tomography aided engineering process.

Autori: Robert M. Auenhammer; Robert M. Auenhammer; Lars Pilgaard Mikkelsen; Leif Asp; Brina J. Blinzler
Pubblicato in: Data in Brief, Vol 33, Iss , Pp 106518- (2020), Numero 3, 2020, ISSN 2352-3409
Editore: Elsevier BV
DOI: 10.1016/j.dib.2020.106518

Suppression of Cone-Beam Artefacts with Direct Iterative Reconstruction Computed Tomography Trajectories (DIRECTT)

Autori: Sotirios Magkos, Andreas Kupsch, Giovanni Bruno
Pubblicato in: Journal of Imaging, Numero 7/8, 2021, Pagina/e 147, ISSN 2313-433X
Editore: MDPI
DOI: 10.3390/jimaging7080147

SparseAlign: A grid-free algorithm for automatic marker localization and deformation estimation in cryo-electron tomography

Autori: P.S. Ganguly, F. Lucka, H. Kohr, E. Franken, H.J. Hupkes, K.J. Batenburg
Pubblicato in: IEEE Transactions on Computational Imaging, Numero 23339403, 2022, Pagina/e 651-665, ISSN 2333-9403
Editore: IEEE
DOI: 10.1109/tci.2022.3194719

PCA reduced Gaussian mixture models with applications in superresolution

Autori: Johannes Hertrich, Dang-Phuong-Lan Nguyen, Jean-Francois Aujol, Dominique Bernard, Yannick Berthoumieu, Abdellatif Saadaldin, Gabriele Steidl
Pubblicato in: Inverse Problems & Imaging, Numero 0/0, 2021, ISSN 1930-8337
Editore: American Institute of Mathematical Sciences
DOI: 10.3934/ipi.2021053

Tomographic Reconstruction of the Small-Angle X-Ray Scattering Tensor with Filtered Back Projection

Autori: Jisoo Kim; Daniël M. Pelt; Matias Kagias; Marco Stampanoni; K. Joost Batenburg; Federica Marone
Pubblicato in: Physical Review Applied, Numero 23317019, 2022, ISSN 2331-7019
Editore: American Physical Society
DOI: 10.1103/physrevapplied.18.014043

X-ray tomography based numerical analysis of stress concentrations in non-crimp fabric reinforced composites - assessment of segmentation methods

Autori: R M Auenhammer, L P Mikkelsen, L E Asp, B J Blinzler
Pubblicato in: IOP Conference Series: Materials Science and Engineering, Numero 942, 2020, Pagina/e 012038, ISSN 1757-899X
Editore: IOP Conference Series: Materials Science and Engineering
DOI: 10.1088/1757-899x/942/1/012038

Automated X-ray computer tomography segmentation method for finite element analysis of non-crimp fabric reinforced composites

Autori: Robert M. Auenhammer; Robert M. Auenhammer; Lars Pilgaard Mikkelsen; Leif Asp; Brina J. Blinzler
Pubblicato in: Auenhammer , R M , Mikkelsen , L P , Asp , L E & Blinzler , B J 2021 , ' Automated X-ray computer tomography segmentation method for finite element analysis of non-crimp fabric reinforced composites ' , Composite Structures , vol. 256 , 113136 . https://doi.org/10.1016/j.compstruct.2020.113136, Numero 1, 2020, ISSN 0263-8223
Editore: Elsevier BV
DOI: 10.1016/j.compstruct.2020.113136

Atomic Super-Resolution Tomography

Autori: P.S. Ganguly, F. Lucka, H.J. Hupkes, K.J. Batenburg
Pubblicato in: Combinatorial Image Analysis, 20th International Workshop, IWCIA 2020, Novi Sad, Serbia, July 16–18, 2020, Numero Lecture Notes in Computer Science Vol.12148, 2020, Pagina/e 45-61, ISBN 978-3-030-51002-2
Editore: Springer
DOI: 10.1007/978-3-030-51002-2

A Tomographic Reconstruction Method using Coordinate-based Neural Network with Spatial Regularization

Autori: Jakeoung Koo, Elise Otterlei Brenne, Anders Bjorholm Dahl, Vedrana Andersen Dahl
Pubblicato in: Proceedings of the Northern Lights Deep Learning Workshop 2021, 2021
Editore: Septentrio Academic Publishing
DOI: 10.7557/18.5676

Cloud enabling educational platforms with corc

Autori: Rasmus Munk, David Marchant and Brian Vinter
Pubblicato in: Proceedings of the 8th Workshop on Cloud Technologies in Education (CTE2020), 2020
Editore: Proceedings of the 8th Workshop on Cloud Technologies in Education (CTE2020)

The significance of the spectral correction of photon counting detector response in material classification from spectral x-ray CT

Autori: Doniyor Jumanazarov, Ja-Keoung Koo, Henning F. Poulsen, Ulrik L. Olsen, Mihai Iovea
Pubblicato in: Quantum Optics and Photon Counting 2021, Numero 1, 2021, Pagina/e 15, ISBN 9781510643772
Editore: SPIE
DOI: 10.1117/12.2589290

Abstract 'Deep learning based missing wedge artefact removal for electron tomography'

Autori: J. Rimpeläinen, S. Bazrafkan, J. Sijbers, J. De Beenhouwer
Pubblicato in: (2019) MC 2019 Berlin Microscopy Conference - Abstracts. Regensburg - IM7.004, 2019, Pagina/e 660-661
Editore: Deutsche Gesellschaft fur elektronenmikroskopie

Managing Event Oriented Workflows

Autori: David Marchant, Rasmus Munk, Elise O. Brenne, Brian Vinter
Pubblicato in: 2020 IEEE/ACM 2nd Annual Workshop on Extreme-scale Experiment-in-the-Loop Computing (XLOOP), 2020, Pagina/e 23-28, ISBN 978-1-6654-2282-6
Editore: IEEE
DOI: 10.1109/xloop51963.2020.00009

From instrument to publication: A First Attempt at an Integrated Cloud for X-ray Facilities

Autori: Munk, Rasmus; Brian Vinter; Zdenek Matej; Artur Barczyk
Pubblicato in: Book of Abstracts of Cloud Services for Synchronisation and Sharing (CS3) 2020 - the 6th Cloud Synchronization & Sharing Conference, 2020
Editore: Cloud Services for Synchronisation and Sharing (CS3)

Teaching Concurrent and Distributed Programming With Concepts Over Mathematical Proofs

Autori: David Marchant, Carl-Johannes Johnsen, Brian Vinter, Kenneth Skovhede
Pubblicato in: 2019 IEEE/ACM Workshop on Education for High-Performance Computing (EduHPC), 2019, Pagina/e 49-57, ISBN 978-1-7281-5975-1
Editore: IEEE
DOI: 10.1109/eduhpc49559.2019.00012

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