Paradigm for Novel Dynamic Oceanic Resource Assessments

Deliverables

Documents, reports (16)

Management options and recommendations

New causal data and knowledge, including first trial of self-sampling programme and peer-reviewed, case-specific publications on seabream, rays, red mullet, rose shrimp, round goby and tuna

New causal data and knowledge including first trial of selfsampling programme and peerreviewed casespecific publications on seabream rays red mullet rose shrimp round goby and tuna

Estimate of welfare outcomes under pretty good yield policies, including article in peer-reviewed journal and research brief aimed at policy makers and industry policy makers and industry

Causal data and knowledge based on existing data

Improved assessment models for the different species in the case study regions including improved biological knowledge

Final report on PANDORA training courses conducted including participate feedback

Direct drivers for long-term profitability and employment of European fleets identified and quantified, including article in peer-reviewed journal and research brief aimed at policy makers and industry

Direct drivers for longterm profitability and employment of European fleets identified and quantified including article in peerreviewed journal and research brief aimed at policy makers and industry

Improved short term forecasts that make use of biological knowledge relevant for short-term development of the stock in the case studies

Improved management scenarios

Report on (second) self-sampling (trial) including valuation

Report on second selfsampling trial including valuation

Strategic projections in the case study regions for the different, specific types of projection methodology

Impacts of new management systems on market supply and food security identified and quantified, including article in peer-reviewed journal and research brief aimed at policy makers and industry

Impacts of new management systems on market supply and food security identified and quantified including article in peerreviewed journal and research brief aimed at policy makers and industry

Key management needs and scenarios

Documentation and final user guide of PANDORA Toolbox

Scoping of regional management needs

Review of available genetic information on population structuring in exploited species including pipeline for implementation of genetic data into the general framework for resource assessment

Open Research Data Pilot (1)

Data management report

Publications

Peer reviewed articles (44)

Integrating reproductive ecology, early life dynamics and mesoscale oceanography to improve albacore tuna assessment in the Western Mediterranean

Author(s): Diego Alvarez-Berastegui, Sámar Saber, G. Walter Ingram, Lara Díaz-Barroso, Patricia Reglero, David Macías, Salvador García-Barcelona, Josetxu Ortiz de Urbina, Joaquín Tintoré, Francisco Alemany
Published in: Fisheries Research, 208, 2018, Page(s) 329-338, ISSN 0165-7836
Publisher: Elsevier BV
DOI: 10.1016/j.fishres.2018.08.014

Atlantic bluefin tuna spawn early to avoid metabolic meltdown in larvae

Author(s): Øyvind Fiksen, Patricia Reglero
Published in: Ecology, 19399170, 2021, Page(s) e03568, ISSN 1939-9170
Publisher: Wiley
DOI: 10.1002/ecy.3568

Using machine learning to link spatiotemporal information to biological processes in the ocean: a case study for North Sea cod recruitment

Author(s): B Kühn, MH Taylor, A Kempf
Published in: Marine Ecology Progress Series, 664, 2021, Page(s) 1-22, ISSN 0171-8630
Publisher: Inter-Research Science Publishing
DOI: 10.3354/meps13689

Small pelagic fish in the new millennium: A bottom-up view of global research effort

Author(s): Myron A. Peck, Jürgen Alheit, Arnaud Bertrand, Ignacio A. Catalán, Susana Garrido, Marta Moyano, Ryan R. Rykaczewski, Akinori Takasuka, Carl D. van der Lingen
Published in: Progress in Oceanography, 191, 2021, Page(s) 102494, ISSN 0079-6611
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.pocean.2020.102494

LeMaRns: A Length-based Multi-species analysis by numerical simulation in R

Author(s): Michael A. Spence, Hayley J. Bannister, Johnathan E. Ball, Paul J. Dolder, Christopher A. Griffiths, Robert B. Thorpe
Published in: PLOS ONE, 15/2, 2020, Page(s) e0227767, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0227767

Close-kin mark–recapture abundance estimation: practical insights and lessons learned

Author(s): Verena M Trenkel; Grégory Charrier; Pascal Lorance; Mark V Bravington
Published in: ICES Journal Of Marine Science, 79/2, 2022, Page(s) 413-422, ISSN 1054-3139
Publisher: Oxford University Press
DOI: 10.1093/icesjms/fsac002

The Use of a Length-Structured Multispecies Model Fitted Directly to Data in Near-Real Time as a Viable Tool for Advice

Author(s): Michael A. Spence, Paul J. Dolder, Richard Nash and Robert B. Thorpe
Published in: Frontiers in Marine Science, 8, 2021, Page(s) 700534, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2021.700534

Atlantic bluefin tuna spawn early to avoid metabolic meltdown in larvae

Author(s): Øyvind Fiksen; Patricia Reglero
Published in: Ecology, 103/1, 2022, Page(s) e03568, ISSN 1939-9170
Publisher: Ecological Society of America
DOI: 10.1002/ecy.3568

Alternative seafood marketing systems foster transformative processes in Mediterranean fisheries

Author(s): Sílvia Gómez, Francesc Maynou
Published in: Marine Policy, 127, 2021, Page(s) 104432, ISSN 0308-597X
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.marpol.2021.104432

Effects of temperature on physiological performance and behavioral thermoregulation in an invasive fish, the round goby

Author(s): Emil A. F. Christensen, Tommy Norin, Iren Tabak, Mikael van Deurs, Jane W. Behrens
Published in: Journal of Experimental Biology, 224(1), 2021, ISSN 0022-0949
Publisher: The Company of Biologists Ltd.
DOI: 10.1242/jeb.237669

Small fish eat smaller fish: A model of interaction strength in early life stages of two tuna species

Author(s): Daniel Ottmann, Patricia Reglero, Francisco Alemany, Diego Alvarez-Berastegui, Melissa Martín, Øyvind Fiksen
Published in: Limnology and Oceanography Letters, 7/3, 2022, Page(s) 227-234, ISSN 2378-2242
Publisher: Wiley
DOI: 10.1002/lol2.10241

Synthesizing Empirical and Modelling Studies to Predict Past and Future Primary Production in the North Sea

Author(s): Michael A. Spence, Christopher P. Lynam, Robert B. Thorpe, Ryan F. Heneghan, Paul J. Dolder
Published in: Frontiers in Marine Science, 9, 2022, Page(s) 828623, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2022.828623

Sale price flexibilities of Mediterranean hake and red shrimp

Author(s): F. Maynou
Published in: Marine Policy, 136, 2022, Page(s) 104904, ISSN 0308-597X
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.marpol.2021.104904

The impacts of climate change on the biomechanics of animals

Author(s): Paolo Domenici, Frank Seebacher
Published in: Conservation Physiology, 8/1, 2020, ISSN 2051-1434
Publisher: Oxford University Press
DOI: 10.1093/conphys/coz102

Diet and feeding behaviour of albacore Thunnus alalunga in the western Mediterranean Sea during the spawning period

Author(s): Maria Valls, Sámar Saber, María José Gómez, Patricia Reglero, Salvatore Mele
Published in: Fish Biology, 10958649, 2022, Page(s) 203-217, ISSN 1095-8649
Publisher: John Wiley & Son
DOI: 10.1111/jfb.14935

Economic, sociocultural and ecological dimensions of fishing capacity in NW Mediterranean fisheries

Author(s): Sílvia Gómez, Francesc Maynou
Published in: Ocean & Coastal Management, 197, 2020, Page(s) 105323, ISSN 0964-5691
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.ocecoaman.2020.105323

Stakeholder engagement vs. social distancing—how does the Covid-19 pandemic affect participatory research in EU marine science projects?

Author(s): Vera Köpsel, Gabriel de Moura Kiipper, Myron A. Peck
Published in: Maritime Studies, 2021, ISSN 1872-7859
Publisher: Centre for Maritime Research, MARE
DOI: 10.1007/s40152-021-00223-4

Challenges to fisheries advice and management due to stock recovery

Author(s): Rob van Gemert, Ken H Andersen
Published in: ICES Journal of Marine Science, 75/6, 2018, Page(s) 1864–1870, ISSN 1054-3139
Publisher: Oxford University Press
DOI: 10.1093/icesjms/fsy084

Size-based theory for fisheries advice

Author(s): Ken H Andersen
Published in: ICES Journal of Marine Science, 77/7-8, 2020, Page(s) 2445–2455, ISSN 1054-3139
Publisher: Oxford University Press
DOI: 10.1093/icesjms/fsaa157

Parasite load of Atlantic cod Gadus morhua in the Baltic Sea assessed by the liver category method, and associations with infection density and critical condition

Author(s): Marie Plambech Ryberg; Bastian Huwer; Anders Nielsen; Jan Dierking; Kurt Buchmann; Maria Sokolova; Uwe Krumme; Jane Behrens
Published in: Fisheries Management and Ecology, 29/1, 2021, Page(s) 88-99, ISSN 1365-2400
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/fme.12516

Evolution of fishing capacity in a Mediterranean fishery in the first two decades of the 21st c.

Author(s): Francesc Maynou
Published in: Ocean & Coastal Management, 192, 2020, Page(s) 105190, ISSN 0964-5691
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.ocecoaman.2020.105190

The Response of North Sea Ecosystem Functional Groups to Warming and Changes in Fishing

Author(s): Robert B. Thorpe, Nina L. Arroyo, Georges Safi, Nathalie Niquil, Izaskun Preciado, Michael Heath, Matthew C. Pace, Christopher P. Lynam
Published in: Frontiers in Marine Science, 9, 2022, Page(s) 841909, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2022.841909

Integrated Social-Economic-Ecological Modeling for Fisheries: The ECOST Model

Author(s): Pierre Failler, Haoran Pan, Negar Akbari
Published in: Frontiers in Marine Science, 8, 2022, Page(s) 704371, ISSN 2296-7745
Publisher: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.704371

Parasite load of Atlantic cod Gadus morhua in the Baltic Sea assessed by the liver category method, and associations with infection density and critical condition

Author(s): Marie Plambech Ryberg, Bastian Huwer, Anders Nielsen, Jan Dierking, Kurt Buchmann, Maria Sokolova, Uwe Krumme, Jane W. Behrens
Published in: Fisheries Management and Ecology, 13652400, 2021, Page(s) 88-99, ISSN 1365-2400
Publisher: Wiley
DOI: 10.1111/fme.12516

Optimal reproductive phenology under size‐dependent cannibalism

Author(s): Nao Takashina, Øyvind Fiksen
Published in: Ecology and Evolution, 10/10, 2020, Page(s) 4241-4250, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.6192

Diet and feeding behaviour of albacore Thunnus alalunga in the western Mediterranean Sea during the spawning period.

Author(s): Maria Valls; Sámar Saber; María José Gómez; Patricia Reglero; S Mele
Published in: Journal of Fish Biology, 100/1, 2022, Page(s) 203-217, ISSN 1095-8649
Publisher: Wiley
DOI: 10.1111/jfb.14935

Co‐viability of a Mediterranean demersal fishery affected by the discard ban under alternative management scenarios

Author(s): Francesc Maynou
Published in: Fisheries Management and Ecology, 26/4, 2019, Page(s) 345-353, ISSN 0969-997X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/fme.12365

Ecological-economic sustainability of the Baltic cod fisheries under ocean warming and acidification

Author(s): Rudi Voss, Martin F. Quaas, Martina H. Stiasny, Martin Hänsel, Guilherme A. Stecher Justiniano Pinto, Andreas Lehmann, Thorsten B.H. Reusch, Jörn O. Schmidt
Published in: Journal of Environmental Management, 238, 2019, Page(s) 110-118, ISSN 0301-4797
Publisher: Academic Press
DOI: 10.1016/j.jenvman.2019.02.105

Accounting for ocean connectivity and hydroclimate in fish recruitment fluctuations within transboundary metapopulations

Author(s): Manuel Hidalgo, Vincent Rossi, Pedro Monroy, Enrico Ser‐Giacomi, Emilio Hernández‐García, Beatriz Guijarro, Enric Massutí, Francisco Alemany, Angelique Jadaud, José Luis Perez, Patricia Reglero
Published in: Ecological Applications, 29/5, 2019, ISSN 1051-0761
Publisher: Ecological Society of America
DOI: 10.1002/eap.1913

Spatiotemporal dynamics of predators and survival of marine fish early life stages: Atlantic cod (Gadus morhua) in the North Sea

Author(s): Anna Akimova, Marc Hufnagl, Myron A. Peck
Published in: Progress in Oceanography, 176, 2019, Page(s) 102121, ISSN 0079-6611
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.pocean.2019.102121

Spatially resolved past and projected changes of the suitable thermal habitat of North Sea cod (Gadus morhua) under climate change

Author(s): Ismael Núñez-Riboni, Marc H Taylor, Alexander Kempf, Miriam Püts, Moritz Mathis
Published in: ICES Journal of Marine Science, 2019, ISSN 1054-3139
Publisher: Oxford University Press
DOI: 10.1093/icesjms/fsz132

Comparing conceptual frameworks for a fish community MSY (FCMSY) using management strategy evaluation—an example from the North Sea

Author(s): Robert B Thorpe, José A A De Oliveira
Published in: ICES Journal of Marine Science, 76/4, 2019, Page(s) 813-823, ISSN 1054-3139
Publisher: Oxford University Press
DOI: 10.1093/icesjms/fsz015

Spatial patterns in infection of cod Gadus morhua with the seal-associated liver worm Contracaecum osculatum from the Skagerrak to the central Baltic Sea

Author(s): M Sokolova, K Buchmann, B Huwer, PW Kania, U Krumme, A Galatius, J Hemmer-Hansen, JW Behrens
Published in: Marine Ecology Progress Series, 606, 2018, Page(s) 105-118, ISSN 0171-8630
Publisher: Inter-Research Science Publishing
DOI: 10.3354/meps12773

What is multispecies MSY? A worked example from the North Sea

Author(s): Robert B. Thorpe
Published in: Journal of Fish Biology, 2019, ISSN 0022-1112
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jfb.13967

Determining long‐term changes in a skate assemblage with aggregated landings and limited species data

Author(s): Florianne Marandel, Pascal Lorance, Verena M. Trenkel
Published in: Fisheries Management and Ecology, 26/4, 2019, Page(s) 365-373, ISSN 0969-997X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/fme.12367

Estimating effective population size of large marine populations, is it feasible?

Author(s): Florianne Marandel, Pascal Lorance, Olivier Berthelé, Verena M. Trenkel, Robin S. Waples, Jean-Baptiste Lamy
Published in: Fish and Fisheries, 20/1, 2019, Page(s) 189-198, ISSN 1467-2960
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/faf.12338

First estimates of metabolic rate in Atlantic bluefin tuna larvae

Author(s): Edurne Blanco, Patricia Reglero, Aurelio Ortega, Arild Folkvord, Fernando Gándara, Alma Hernández de Rojas, Marta Moyano
Published in: Journal of Fish Biology, 97/5, 2020, Page(s) 1296-1305, ISSN 0022-1112
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jfb.14473

Spawning site distribution of a bluefin tuna reduces jellyfish predation on early life stages

Author(s): Daniel Ottmann; Øyvind Fiksen; Melissa Martín; Francisco Alemany; Laura Prieto; Diego Alvarez-Berastegui; Patricia Reglero
Published in: Limnology and Oceanography, 66/10, 2021, Page(s) 3669-3681, ISSN 1939-5590
Publisher: John Wiley & Sons, Inc.
DOI: 10.1002/lno.11908

Commentary: Combining Ecosystem and Single-Species Modeling to Provide Ecosystem-Based Fisheries Management Advice Within Current Management Systems

Author(s): Robert B. Thorpe, Michael A. Spence, Paul J. Dolder and Richard D. M. Nash
Published in: Frontiers in Marine Science, 8, 2021, Page(s) 707841, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2021.707841

Trade-offs between employment and profitability in a MediterraneanSea mixed bottom trawl fishery

Author(s): F. Maynou
Published in: Regional Studies in Marine Science, 48, 2021, Page(s) 102020, ISSN 2352-4855
Publisher: Elsevier
DOI: 10.1016/j.rsma.2021.102020

Disentangling the components of coastal fish biodiversity in southern Brittany by applying an environmental DNA approach

Author(s): Rozanski Romane, Trenkel Verena, Lorance Pascal, Valentini Alice, Dejean Tony, Pellissier Loïc, Eme David, Albouy Camille
Published in: Environmental DNA, Early View, 2022, ISSN 2637-4943
Publisher: John Wiley & Sons Ltd
DOI: 10.1002/edn3.305

Estimating effective population size using RADseq: Effects of SNP selection and sample size

Author(s): Florianne Marandel, Grégory Charrier, Jean‐Baptiste Lamy, Sabrina Le Cam, Pascal Lorance, Verena M. Trenkel
Published in: Ecology and Evolution, 10/4, 2020, Page(s) 1929-1937, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.6016

Methods for identifying and interpreting sex‐linked SNP markers and carrying out sex assignment: application to thornback ray ( Raja clavata )

Author(s): Verena M. Trenkel, Pierre Boudry, Véronique Verrez‐Bagnis, Pascal Lorance
Published in: Molecular Ecology Resources, 20/6, 2020, Page(s) 1610-1619, ISSN 1755-098X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13225

Balancing ecology, economy and culture in fisheries policy: Participatory research in the Western Mediterranean demersal fisheries management plan

Author(s): Sílvia Gómez, Francesc Maynou
Published in: Journal of Environmental Management, 291, 2021, Page(s) 112728, ISSN 0301-4797
Publisher: Academic Press
DOI: 10.1016/j.jenvman.2021.112728