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Human Brain Project Specific Grant Agreement 2

Deliverables

D4.4.1 All Models of Key Cognitive Processes developed during SGA2

Presentation of all models developed by WP4.4 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D2.4.1 Software tool for brain structure - phenotype associations

Software tool for brain structure - phenotype associations implemented (T2.4.2); software available for usage

D9.1.1 Working prototype of a Collaboratory app for graphical model building

Collaboratory app usable by an SP9 member outside the developer team

D5.6.1 Interactive classifier training via the new Viewer

Users can train machine learning algorithms interactively by giving annotations in the web-based Viewer (T5.6.1)

D2.6.1 Tool for Morphological classification of neurons

Tool for Morphological classification of neurons (T2.6.4) made available; storage of software on HBP Collab

D5.3.1 New release of interactive spatial alignment tool

We will deploy the 2nd release of the interactive spatial alignment tool started in SGA1. The release will provide a significantly streamlined user interface, especially a much better user experience in terms of landmark management and interactive navigation. (T5.3.3)

D7.3.1 Multi-compartment benchmark and validation suites on HPC systems

The validation and benchmark suites for multi- compartment simulators are deployed and their associated documentation can be downloaded from public repositories; the continuous integration framework is publishing up to date validation and benchmark results from HPC systems used in the HBP.

D9.5.1 Temporal filtering network

Network for temporal filtering running on SpiNNaker (Task 9.5.1)

D2.3.1 Alignment strategy of datasets from TPFM, 3D-PLI, and dMRI

Alignment strategy of datasets from TPFM, 3D-PLI, and dMRI implemented (T2.3.4); Datasets made available in the HBP human brain atlas

D9.3.1 PyNN 0.9 on SpiNNaker

As complete a PyNN 0.9 implementation on SpiNNaker as possible (Task 9.3.3)

D5.7.1 Representations of optical imaging data in the Neo data object model

This is a release of the Neo library that contains support for the representations of optical imaging data. This feature will facilitate the analysis of activity data obtained from optical imaging experiments using tools built on the Neo data model. Successful representation of a dataset in the Neo object model, and the subsequent application of an analysis function of the Elephant framework on that data object, will be shown (T5.7.1-2)

D4.3.1 All Models of Plasticity, Learning and Memory developed during SGA2

Presentation of all models developed by WP4.3 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D4.5.1 All Whole-Brain Models developed during SGA2 and Comparison with Experiments

Presentation of all models developed by WP4.5 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D2.1.1 Comparison of Deep-learning based cytoarchitectonic mapping of cortex in the big brain against gold standard cytoarchitectonic map

Deep-learning based cytoarchitectonic mapping of cortex in the big brain and comparison against gold standard cytoarchitectonic map (T2.1.4); map made available in the HBP human brain atlas

D8.5.3 Μedical Informatics Platform Releases - SOFTWARE & REPORT

Μedical Informatics Platform Releases - SOFTWARE & REPORT

D5.4.1 First release of software adapted to new Viewer Architecture

Coordinated release of several services related to atlas viewers, adapted to a more unified viewer infrastructure. The architecture of this unified viewer ecosystem will be specified by SP5 towards the end of SGA1 and become the basis for this work. (T5.4.3)

D4.2.1 All Models of Brain Circuits developed during SGA2

Presentation of all models developed by WP4.2 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D4.1.1 All Models for Bridging Scales developed during

Presentation of all models developed by WP4.1 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D6.1.1 SP6 Annual Compound Deliverable Year 1

Overview of key results and impact achieved in M1-M12, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).

D12.4.1 Data Policy Manual

Having a set of data-related policies is a requirement for the HBP in order to: -Ensure that expectations with regards to data handling are clear -Comply with all data-related regulations and legislation, in particular those related to data protection -Ensure that all data registered and used in the HBP comply with ethical and other requirements -Demonstrate good management and leadership and implement good practice in data management Milestone verified by upload of the Data Policy Manual.

D1.6.2 SP1 Mouse Brain Organisation and Interspecies Comparisons - Second Data Results package (update on implementation of the DMP - M24)

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: final report on the SP1 planned deliveries. This report will include the datasets generated in the SGA2 on whole brain and four major brain circuits (neocortex, cerebellum, basal ganglia, and hippocampus) data. This report will also include the final results on the integration of molecular, cellular and functional data (neocortex, cerebellum, basal ganglia, and hippocampus) and its application for modelling.

D1.3.2 CDP1 Annual Compound Deliverable Year 2

CDP1 Annual Compound Deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)

D5.1.1 Completion of SGA1 data/model curation into NIP meta data database

Table showing link between data/model components in PLA and curated data/models in NIP (T5.1.1-2)

D8.6.1 CDP6 Results SGA2 Year 1 Implementation for accurate HPC-based screening protocols of neuro-drug candidates

CDP6 Results SGA2 Year 1 Implementation for accurate HPC-based screening protocols of neuro-drug candidates. CDP6 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will also refer to results for SGA2_HPC-based chemical optimisation codes and increasing ligand specificity toward receptors' subclasses

D9.6.2 SP9 Neuromorphic Computing Platform - Results from SGA2 year 2

The summary of SP 9 results for project months M13-24, broken down by task. WPs involved: WP9.1, WP9.2, WP9.3, WP9.4, WP9.5 and WP9.6 In order to report fully, the Deliverable may need to include information that the SP does not wish to make public at the time of the report. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published publicly.

D6.4.1 CDP2 Annual Compound Deliverable Year 2

Overview of key results and impact achieved in M13-M24, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).

D2.7.3 CDP3 Results for SGA2 Year 1

CDP3 SGA2 Results Overview Deliverable: Overview of Key Results achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public)

D10.5.2 SP10 Neurorobotics Platform - Results for SGA2 Year 2

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4 & WP10.5 Summary of SP Results for M12-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications

D7.2.1 Key technologies for fast data access and retrieval

This report summarises key technologies to support fast data access and retrieval for interactive analysis and visualisation, which have been identified and tested. This deliverable does not yet comprise the final implementation of these technologies.

D12.3.2 2nd Report SP12-SGA2: Lessons from stakeholder engagement and dialogue

The report collects up on the lessons learned from stakeholder dialogue and engagement in the Human Brain Project, from the ramp-up to the end of the SGA2 phase, and it develops foundation for stakeholder engagement in the final phases of the Human Brain Project.

D11.5.1 Fourth HBP Curriculum teaching cycle released (T11.5.2)

Third HBP Curriculum teaching cycle through online questionnaire evaluated and online courses adapted. Fourth teaching cycle started and Call for Expression of Interest for HBP Curriculum Workshops announced. Evaluation results are made available for consortium members and the public upon request. Call for Expression of Interest announced to the scientific community.

D8.5.1 Software requirements specifications (SRS) - REPORT

Software requirements specifications (SRS) - REPORT

D6.3.1 SP6 Annual Compound Deliverable Year 2

Overview of key results and impact achieved in M13-M24, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).

D5.8.2 SP5 Neuroinformatics Platform - Results for SGA2 Year 2

Summary of SP Results for M13-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP Products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website.

D12.3.1 Report on SP12-SGA2 Citizen engagement

Report on citizen engagement activities across Europe, including recommendations from citizens to the Human Brain Project.

D8.4.1 Reports on disease signatures via sub-type identification, on development and application of methods, and tools

Report on identification of disease signatures and application development is delivered.

D5.2.1 Release of updated atlas curation supporting material

Users can access tutorials and SOPs from HBP workbench or request support from UiO atlas curation team (T5.2.2)

D5.8.1 SP5 Neuroinformatics Platform - Results for SGA2 Year 1

SP5 Neuroinformatics Platform - Results for SGA2 Year 1 Summary of SP Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP Products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications o SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website.

D8.3.1 Signed partnership with one European reference network

Signed partnership with one European reference network

D3.6.1 Systems and Cognitive Neuroscience - Results for SGA2 Year 1

WPs involved: WP3.1, WP3.2., WP3.3, WP3.4, WP3.5, WP3.6 Summary of SP3 Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications

D2.7.4 CDP3 Results for SGA2 Year 2

CDP3 SGA2 Results Overview Deliverable Overview of Key Results achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public)

D9.4.1 CDP5-Biological deep learning: Results for SGA2 Year 1

CDP5-Biological deep learning: Results for SGA2 Year 1 CDP5 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will be a public report including theoretical research on learning principles, their transfer to the HBP computing infrastructures in SP7 and SP9, results of initial experiments and plans for M13 to M24 in SGA2

D4.6.1 SP4 EITN activity report

Report on EITN activity, its success, points that can be improved and what is foreseen

D8.2.1 MIP installed in Thirty Hospitals

MIP installed in Thirty Hospitals Demonstration of MIP software installation in 30 hospitals. Demonstration will be in form of a summary report of results: data profiling in each site, issues and lessons learned, user tests and feedback received during the hand-over and training.

D5.10.1 CDP8 Results SGA2

CDP8 SGA2 Results Overview Deliverable: Overview of Key Results achieved in M1 to M24, tailored for presentation to the relevant audiences. WPs involved: WP5.10. Key results involved: KRc8.1, KRc8.2, KRc8.3. Use cases involved: SGA2-SP4-UC001, SGA2-SP5-UC001, SGA2-SP5-UC002, SGA2-SP6-UC001, SGA2-SP6-UC003, SGA2-SP7-UC001, SGA2-SP11-UC003. The report summarizes the results obtained during the project phase, which will involve: code for large-scale brain simulation on HBP’s Joint Platform; code for connectome extraction and integration of results into NIP ontology; interactive tutorials; preprocessed connectomes from major repositories; online version of von Economo and Koskinas atlas; linked connectivity to architectonic data; human connectivity predictions.

D1.6.3 SP1 Mouse Brain Organisation and Interspecies Comparisons - Comparative study of cells and microcircuits in the rodent and human brain

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: report on the final comparative study of cells and microcircuits in the rodent and human brain.

D7.6.1 SP7 High-Performance Analytics and Computing Platform - Results for SGA2 Year 1

High Performance Analytics and Computing Platform v2.5. The Platform, accessible to end users through the HBP Collaboratory, will provide the HBP and the neuroscience community with access to federated data and scalable compute resources as well as visualisation and simulation technology.

D9.4.2 CDP5-Biological deep learning: Results for SGA2 Year 2

CDP5 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will be a public report including theoretical research on learning principles, their transfer to the HBP computing infrastructures in SP7 and SP9, final experimental results and applications, an evaluation of the developments outside the HBP and a planning outlook to SGA3.

D12.2.1 Report on conceptual issues in human identity

Report on conceptual issues in human identity.

D2.7.2 SP2 Human Brain Organisation - Results for SGA2 Year 2

WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M13-24

D8.10.1 Provide operational MIP infrastructures to UKAACHEN and CHARITE

Provide operational MIP infrastructures to UKAACHEN (P73) and CHARITE (P122), to develop and implement a pathophysiological model for neurobehavioural symptom clustering. Test run and report of data analysis.

D7.6.2 SP7 High-Performance Analytics and Computing Platform - Results for SGA2 Year 2

High Performance Analytics and Computing Platform v3. The Platform, accessible to end users through the HBP Collaboratory, will provide the HBP and the neuroscience community with access to federated data and scalable compute resources. It will also provide visualisation and exascale-ready simulation technology.

D8.1.2 SP8 MIP - Results for SGA2 Year 2

SP8 MIP - Results for SGA2 period 2 SP8 Summary of Results for M12-24: actual vs. planned results o Risks and Issues log updated o Key Results, Impact status & Exceptional Achievements (from users' perspective) o Dependent results flow (i.e. if/how dependent components were incorporated into the next) o Milestones due and achieved, how validated, by whom o Milestones due but not achieved, why, impact, corrective action o Lessons Learned (and if any incorporated already) o Product Roadmap updated o Platform User feedback on the period o Publications

D6.2.1 CDP2 Annual Compound Deliverable Year 1

Overview of key results and impact achieved in M1-M12, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).

D1.6.1 SP1 Mouse Brain Organisation and Interspecies Comparisons: First Data Results package (update on implementation of the DMP - M12)

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: First report including the preliminary list of deliveries for the period M01-M12 including datasets, tools, and models. The results expected to be included are as follows: preliminary datasets generated in the SGA2 on whole brain and four major brain circuits (neocortex, cerebellum, basal ganglia, hippocampus); First draft on the integration of molecular, cellular and functional data (neocortex, cerebellum, basal ganglia, hippocampus) and its application for modelling; Preliminary datasets for the comparative study of cells and microcircuits in the rodent and human brain.

D8.1.1 SP8 MIP - Results for SGA2 Year 1

SP8 MIP - Results for SGA2 period 1 SP8 Summary of Results for M1-12: actual vs. planned results o Risks and Issues log updated o Key Results, Impact status & Exceptional Achievements (from users' perspective) o Dependent results flow (i.e. if/how dependent components were incorporated into the next) o Milestones due and achieved, how validated, by whom o Milestones due but not achieved, why, impact, corrective action o Lessons Learned (and if any incorporated already) o Product Roadmap updated o Platform User feedback on the period o Publications

D11.1.1 Governance handbook

DIR handbook with procedures to follow regarding internal management, interactions with PCO, with SP Leaders and with Advisory Boards. (T11.1.2)

D12.1.1 SP12-SGA2 Foresight Lab & Researchers Awareness background report 2

Original research: Briefing report on Communities and Infrastructure Building. Milestone verified by upload of the report.

D11.2.10 Gender Action Plan

The Gender Action Plan is a required reference document to align structure and processes, objectives and key activities for improved gender equality in HBP with DIR, SIB, GAC, Ethic Board, Education Programme and Subprojects.

D11.1.3 SP11 Management and Coordination – Public Key Results Year 2

Summary of SP11 public Key Results for SGA2 Year 2 (M13-M24)

D10.5.1 SP10 Neurorobotics Platform - Results for SGA2 Year 1

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4 & WP10.5 Summary of SP Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications o SP Roadmap for SGA3

D12.5.4 SP12 Opinion 3 (Component id: 1967)

SP12's third Opinion on ethical, philosophical and societal issues related to consciousness. (ID: 1967)

D2.2.1 CDP4 Visuo-Motor Integration - Results for SGA2 Year 1

CDP4 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)

D11.3.4 Short Summary of Infrastructure Voucher Programme

Infrastructure Vouchers calls closed; vouchers assigned to the selected users; budget distribution made; short evaluation summary report (T11.3.4, T11.6.1)

D3.3.1 Acquisition of first datasets of electrophysiological recordings of hippocampal cells in VR environment

Release of software code and simulated data (preliminary version) (T3.2.5)

D12.5.1 SGA2-SP12 M12 reporting

Progress report of SP12 for M12 SGA2.

D9.6.1 SP9 Neuromorphic Computing Platform - Results from SGA2 year 1

The summary of SP 9 results for project months M1-12, broken down by task. WPs involved: WP9.1, WP9.2, WP9.3, WP9.4, WP9.5 and WP9.6 In order to report fully, the Deliverable may need to include information that the SP does not wish to make public at the time of the report. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published publicly.

D7.1.1 HPAC Platform Architecture Specification v1

This report will contain a first specification within SGA2 of the HPAC Platform including the Fenix infrastructure.

D6.5.1 SP6 Summary Report on Community Outreach

Summary report of SP6 SGA2 community outreach.

D4.7.1 SP4 Theoretical Neuroscience models - 1st part

Involves all models of work done from all members of the SP4 during the 1st year of SGA2. As there are some models not yet published, there will be a confidential annex for this confidential data that will be only accessible to reviewers, EC and PCO.

D3.6.2 SP3 Systems and Cognitive Neuroscience - Results for SGA2 Year 2

WPs involved: WP3.1, WP3.2., WP3.3, WP3.4, WP3.5, WP3.6 Summary of SP3 Results for M13-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications

D 1.3.1 CDP1 Annual Compound Deliverable Year 1

CDP1 Annual Compound Deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)

D5.9.1 Strategy and organization of a High-Level Support Team (HLST)

Plan for decision making on the use of resources to achieve the overall goals of the joint platform and organization and coordination of the operations of the HLST.

D4.4.2 CDP7 Results SGA2

This deliverable describes the results of CDP7during SGA2, focusing in particular on novel empirical and computational studies of hierarchical navigational planning in humans and rodents

D2.7.1 SP2 Human Brain Organisation - Results for SGA2 Year 1

WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M1-12

D2.5.1 CDP4 Visuo-Motor Integration - Results for SGA2 Year 2

CDP4 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)

D8.6.2 CDP6 Results SGA2 Year 2 HPC-based chemical optimisation codes increasing ligand specificity toward receptors' subclasses

CDP6 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will also refer to results for SGA2_HPC-based screening protocols and implementation for accurate HPC-based screening protocols of neuro-drug candidates.

D8.9.2 Curated and tested brain disease ontologies integrated within application services

Brain ontologies are integrated and accessible through OLS-NEURO. All application services (OLS-NEURO, SCAIView-Neuro) are online and available for use in MIP.

D8.7.2 BIDS Apps for imaging data processing pipelines

Applications for the imaging data processing pipelines using the Brain Imaging Data Structure format.

D5.5.1 Reproducible scientific software release 2

This production release will make publicly available JupyterLab functionality optimized and integrated with HBP data management solutions and data service APIs (T5.5.2)

D7.5.1 HPAC Platform including CEA resources

The compute and storage resources of the new HPAC partner CEA are integrated into the HPAC Platform, including the corresponding documentation in the Guidebook. The implementation of a use case workflow is used to demonstrate the functionality and documented in a short report.

D7.4.1 HBP Visualisation Software Catalogue

The HBP Visualisation Catalogue gives an overview of all visualisation tools and methods available in the HBP. It is a publicly available website that is also integrated into the Collaboratory. It contains semantic query functionality to support users in finding the right visualisation method and software for their specific needs.

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Publications

An automated home-cage-based 5-choice serial reaction time task for rapid assessment of attention and impulsivity in rats

Author(s): B. Bruinsma, H. Terra, S. F. de Kloet, A. Luchicchi, A. J. Timmerman, E. Remmelink, M. Loos, Tommy Pattij, Huibert D. Mansvelder
Published in: Psychopharmacology, 2019, ISSN 0033-3158
DOI: 10.1007/s00213-019-05189-0

Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data

Author(s): Robin Gutzen, Michael von Papen, Guido Trensch, Pietro Quaglio, Sonja Grün, Michael Denker
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00090

Diattenuation Imaging reveals different brain tissue properties

Author(s): Miriam Menzel, Markus Axer, Katrin Amunts, Hans De Raedt, Kristel Michielsen
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-38506-w

Roles for globus pallidus externa revealed in a computational model of action selection in the basal ganglia

Author(s): Shreyas M. Suryanarayana, Jeanette Hellgren Kotaleski, Sten Grillner, Kevin N. Gurney
Published in: Neural Networks, Issue 109, 2019, Page(s) 113-136, ISSN 0893-6080
DOI: 10.1016/j.neunet.2018.10.003

A Fast Solver for Large Tridiagonal Systems on Multi-Core Processors (Lass Library)

Author(s): Pedro Valero-Lara, Diego Andrade, Raul Sirvent, Jesus Labarta, Basilio B. Fraguela, Ramon Doallo
Published in: IEEE Access, Issue 7, 2019, Page(s) 23365-23378, ISSN 2169-3536
DOI: 10.1109/access.2019.2900122

Computational geometry for modeling neural populations: From visualization to simulation

Author(s): Marc de Kamps, Mikkel Lepperød, Yi Ming Lai
Published in: PLOS Computational Biology, Issue 15/3, 2019, Page(s) e1006729, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006729

Population shrinkage of covariance (PoSCE) for better individual brain functional-connectivity estimation

Author(s): Mehdi Rahim, Bertrand Thirion, Gaël Varoquaux
Published in: Medical Image Analysis, Issue 54, 2019, Page(s) 138-148, ISSN 1361-8415
DOI: 10.1016/j.media.2019.03.001

Body Randomization Reduces the Sim-to-Real Gap for Compliant Quadruped Locomotion

Author(s): Alexander Vandesompele, Gabriel Urbain, Hossain Mahmud, Francis wyffels, Joni Dambre
Published in: Frontiers in Neurorobotics, Issue 13, 2019, ISSN 1662-5218
DOI: 10.3389/fnbot.2019.00009

Fiber length profiling: A novel approach to structural brain organization

Author(s): Claude J. Bajada, Jan Schreiber, Svenja Caspers
Published in: NeuroImage, Issue 186, 2019, Page(s) 164-173, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2018.10.070

Modeling the Encoding of Saccade Kinematic Metrics in the Purkinje Cell Layer of the Cerebellar Vermis

Author(s): Hari Teja Kalidindi, Thomas George Thuruthel, Cecilia Laschi, Egidio Falotico
Published in: Frontiers in Computational Neuroscience, Issue 12, 2019, ISSN 1662-5188
DOI: 10.3389/fncom.2018.00108

Cytoarchitectonic segregation of human posterior intraparietal and adjacent parieto-occipital sulcus and its relation to visuomotor and cognitive functions

Author(s): Monika Richter, Katrin Amunts, Hartmut Mohlberg, Sebastian Bludau, Simon B Eickhoff, Karl Zilles, Svenja Caspers
Published in: Cerebral Cortex, Issue 29/3, 2018, Page(s) 1305-1327, ISSN 1047-3211
DOI: 10.1093/cercor/bhy245

Correction: Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia

Author(s): Ida E. Sønderby, Ómar Gústafsson, Nhat Trung Doan, Derrek P. Hibar, Sandra Martin-Brevet, Abdel Abdellaoui, David Ames, Katrin Amunts, Michael Andersson, Nicola J. Armstrong, Manon Bernard, Nicholas Blackburn, John Blangero, Dorret I. Boomsma, Janita Bralten, Hans-Richard Brattbak, Henry Brodaty, Rachel M. Brouwer, Robin Bülow, Vince Calhoun, Svenja Caspers, Gianpiero Cavalleri, Chi-Hua Chen,
Published in: Molecular Psychiatry, 2019, ISSN 1359-4184
DOI: 10.1038/s41380-019-0358-8

The circuit architecture of cortical multisensory processing: Distinct functions jointly operating within a common anatomical network

Author(s): Guido T. Meijer, Paul E.C. Mertens, Cyriel M.A. Pennartz, Umberto Olcese, Carien S. Lansink
Published in: Progress in Neurobiology, Issue 174, 2019, Page(s) 1-15, ISSN 0301-0082
DOI: 10.1016/j.pneurobio.2019.01.004

Reappearance of Command-Following Is Associated With the Recovery of Language and Internal-Awareness Networks: A Longitudinal Multiple-Case Report

Author(s): Charlène Aubinet, Rajanikant Panda, Stephen Karl Larroque, Helena Cassol, Mohamed Ali Bahri, Manon Carrière, Sarah Wannez, Steve Majerus, Steven Laureys, Aurore Thibaut
Published in: Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
DOI: 10.3389/fnsys.2019.00008

Patterns of Dendritic Basal Field Orientation of Pyramidal Neurons in the Rat Somatosensory Cortex

Author(s): Ignacio Leguey, Ruth Benavides-Piccione, Concepción Rojo, Pedro Larrañaga, Concha Bielza, Javier DeFelipe
Published in: eneuro, Issue 5/6, 2018, Page(s) ENEURO.0142-18.2018, ISSN 2373-2822
DOI: 10.1523/eneuro.0142-18.2018

Control of a Humanoid NAO Robot by an Adaptive Bioinspired Cerebellar Module in 3D Motion Tasks

Author(s): Alberto Antonietti, Dario Martina, Claudia Casellato, Egidio D’Angelo, Alessandra Pedrocchi
Published in: Computational Intelligence and Neuroscience, Issue 2019, 2019, Page(s) 1-15, ISSN 1687-5265
DOI: 10.1155/2019/4862157

Combining lifestyle risks to disentangle brain structure and functional connectivity differences in older adults

Author(s): Nora Bittner, Christiane Jockwitz, Thomas W. Mühleisen, Felix Hoffstaedter, Simon B. Eickhoff, Susanne Moebus, Ute J. Bayen, Sven Cichon, Karl Zilles, Katrin Amunts, Svenja Caspers
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
DOI: 10.1038/s41467-019-08500-x

A Method for the Symbolic Representation of Neurons

Author(s): Jose Juan Aliaga Maraver, Susana Mata, Ruth Benavides-Piccione, Javier DeFelipe, Luis Pastor
Published in: Frontiers in Neuroanatomy, Issue 12, 2018, ISSN 1662-5129
DOI: 10.3389/fnana.2018.00106

Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0

Author(s): Espen Hagen, Solveig Næss, Torbjørn V. Ness, Gaute T. Einevoll
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00092

Sleep deprivation differentially affects subcomponents of cognitive control

Author(s): Anikó Kusztor, Liisa Raud, Bjørn E Juel, André S Nilsen, Johan F Storm, Rene J Huster
Published in: Sleep, Issue 42/4, 2019, ISSN 0161-8105
DOI: 10.1093/sleep/zsz016

How does the presence of neural probes affect extracellular potentials?

Author(s): Alessio Paolo Buccino, Miroslav Kuchta, Karoline Horgmo Jæger, Torbjørn Vefferstad Ness, Pierre Berthet, Kent-Andre Mardal, Gert Cauwenberghs, Aslak Tveito
Published in: Journal of Neural Engineering, Issue 16/2, 2019, Page(s) 026030, ISSN 1741-2560
DOI: 10.1088/1741-2552/ab03a1

Genes, Cells and Brain Areas of Intelligence

Author(s): Natalia A. Goriounova, Huibert D. Mansvelder
Published in: Frontiers in Human Neuroscience, Issue 13, 2019, ISSN 1662-5161
DOI: 10.3389/fnhum.2019.00044

Controlling seizure propagation in large-scale brain networks

Author(s): Simona Olmi, Spase Petkoski, Maxime Guye, Fabrice Bartolomei, Viktor Jirsa
Published in: PLOS Computational Biology, Issue 15/2, 2019, Page(s) e1006805, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006805

Making the Environment an Informative Place: A Conceptual Analysis of Epistemic Policies and Sensorimotor Coordination

Author(s): Giovanni Pezzulo, Stefano Nolfi
Published in: Entropy, Issue 21/4, 2019, Page(s) 350, ISSN 1099-4300
DOI: 10.3390/e21040350

MEDUSA: A GPU-based tool to create realistic phantoms of the brain microstructure using tiny spheres

Author(s): Kévin Ginsburger, Felix Matuschke, Fabrice Poupon, Jean-François Mangin, Markus Axer, Cyril Poupon
Published in: NeuroImage, Issue 193, 2019, Page(s) 10-24, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.02.055

Empirical examination of the replicability of associations between brain structure and psychological variables

Author(s): Shahrzad Kharabian Masouleh, Simon B Eickhoff, Felix Hoffstaedter, Sarah Genon
Published in: eLife, Issue 8, 2019, ISSN 2050-084X
DOI: 10.7554/elife.43464

Human consciousness is supported by dynamic complex patterns of brain signal coordination

Author(s): A. Demertzi, E. Tagliazucchi, S. Dehaene, G. Deco, P. Barttfeld, F. Raimondo, C. Martial, D. Fernández-Espejo, B. Rohaut, H. U. Voss, N. D. Schiff, A. M. Owen, S. Laureys, L. Naccache, J. D. Sitt
Published in: Science Advances, Issue 5/2, 2019, Page(s) eaat7603, ISSN 2375-2548
DOI: 10.1126/sciadv.aat7603

Electrical Compartmentalization in Neurons

Author(s): Willem A.M. Wybo, Benjamin Torben-Nielsen, Thomas Nevian, Marc-Oliver Gewaltig
Published in: Cell Reports, Issue 26/7, 2019, Page(s) 1759-1773.e7, ISSN 2211-1247
DOI: 10.1016/j.celrep.2019.01.074

Reconstructing imagined letters from early visual cortex reveals tight topographic correspondence between visual mental imagery and perception

Author(s): Mario Senden, Thomas C. Emmerling, Rick van Hoof, Martin A. Frost, Rainer Goebel
Published in: Brain Structure and Function, Issue 224/3, 2019, Page(s) 1167-1183, ISSN 1863-2653
DOI: 10.1007/s00429-019-01828-6

Editorial: Between Theory and Clinic: The Contribution of Neuroimaging in the Field of Consciousness Disorders

Author(s): Olivia Gosseries, Caroline Schnakers, Steven Laureys
Published in: Frontiers in Neurology, Issue 10, 2019, ISSN 1664-2295
DOI: 10.3389/fneur.2019.00165

What Can Computational Models Contribute to Neuroimaging Data Analytics?

Author(s): Oleksandr V. Popovych, Thanos Manos, Felix Hoffstaedter, Simon B. Eickhoff
Published in: Frontiers in Systems Neuroscience, Issue 12, 2019, ISSN 1662-5137
DOI: 10.3389/fnsys.2018.00068

Default Mode Network Structural Integrity and Cerebellar Connectivity Predict Information Processing Speed Deficit in Multiple Sclerosis

Author(s): Giovanni Savini, Matteo Pardini, Gloria Castellazzi, Alessandro Lascialfari, Declan Chard, Egidio D’Angelo, Claudia A. M. Gandini Wheeler-Kingshott
Published in: Frontiers in Cellular Neuroscience, Issue 13, 2019, ISSN 1662-5102
DOI: 10.3389/fncel.2019.00021

SpiNNTools: The Execution Engine for the SpiNNaker Platform

Author(s): Andrew G. D. Rowley, Christian Brenninkmeijer, Simon Davidson, Donal Fellows, Andrew Gait, David R. Lester, Luis A. Plana, Oliver Rhodes, Alan B. Stokes, Steve B. Furber
Published in: Frontiers in Neuroscience, Issue 13, 2019, ISSN 1662-453X
DOI: 10.3389/fnins.2019.00231

Clinical and electrophysiological investigation of spastic muscle overactivity in patients with disorders of consciousness following severe brain injury

Author(s): G. Martens, T. Deltombe, M. Foidart-Dessalle, S. Laureys, A. Thibaut
Published in: Clinical Neurophysiology, Issue 130/2, 2019, Page(s) 207-213, ISSN 1388-2457
DOI: 10.1016/j.clinph.2018.10.021

Rationally designed azobenzene photoswitches for efficient two-photon neuronal excitation

Author(s): Gisela Cabré, Aida Garrido-Charles, Miquel Moreno, Miquel Bosch, Montserrat Porta-de-la-Riva, Michael Krieg, Marta Gascón-Moya, Núria Camarero, Ricard Gelabert, José M. Lluch, Félix Busqué, Jordi Hernando, Pau Gorostiza, Ramon Alibés
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
DOI: 10.1038/s41467-019-08796-9

Drug Addiction: From Neuroscience to Ethics

Author(s): Michele Farisco, Kathinka Evers, Jean-Pierre Changeux
Published in: Frontiers in Psychiatry, Issue 9, 2018, ISSN 1664-0640
DOI: 10.3389/fpsyt.2018.00595

Parkinson's disease: Is it a consequence of human brain evolution?


Published in: ISSN 0885-3185
DOI: 10.1002/mds.27628

Differential influences of environment and self-motion on place and grid cell firing

Author(s): Guifen Chen, Yi Lu, John A King, Francesca Cacucci, Neil Burgess
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
DOI: 10.1038/s41467-019-08550-1

A Computational Model of Visual Recognition Memory via Grid Cells

Author(s): Andrej Bicanski, Neil Burgess
Published in: Current Biology, Issue 29/6, 2019, Page(s) 979-990.e4, ISSN 0960-9822
DOI: 10.1016/j.cub.2019.01.077

Efficient Reward-Based Structural Plasticity on a SpiNNaker 2 Prototype

Author(s): Yexin Yan, David Kappel, Felix Neumarker, Johannes Partzsch, Bernhard Vogginger, Sebastian Hoppner, Steve Furber, Wolfgang Maass, Robert Legenstein, Christian Mayr
Published in: IEEE Transactions on Biomedical Circuits and Systems, Issue 13/3, 2019, Page(s) 579-591, ISSN 1932-4545
DOI: 10.1109/tbcas.2019.2906401

Tailored Sample Mounting for Light-Sheet Fluorescence Microscopy of Clarified Specimens by Polydimethylsiloxane Casting

Author(s): Antonino Paolo Di Giovanna, Caterina Credi, Alessandra Franceschini, Marie Caroline Müllenbroich, Ludovico Silvestri, Francesco Saverio Pavone
Published in: Frontiers in Neuroanatomy, Issue 13, 2019, ISSN 1662-5129
DOI: 10.3389/fnana.2019.00035

Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines

Author(s): Sveinung Lillehaug, Michael J. Yetman, Maja A. Puchades, Martyna M. Checinska, Heidi Kleven, Joanna L. Jankowsky, Jan G. Bjaalie, Trygve B. Leergaard
Published in: Scientific Data, Issue 6, 2019, Page(s) 190028, ISSN 2052-4463
DOI: 10.1038/sdata.2019.28

Areal differences in depth cue integration between monkey and human

Author(s): Marcelo Armendariz, Hiroshi Ban, Andrew E. Welchman, Wim Vanduffel
Published in: PLOS Biology, Issue 17/3, 2019, Page(s) e2006405, ISSN 1545-7885
DOI: 10.1371/journal.pbio.2006405

Large and fast human pyramidal neurons associate with intelligence

Author(s): Natalia A Goriounova, Djai B Heyer, René Wilbers, Matthijs B Verhoog, Michele Giugliano, Christophe Verbist, Joshua Obermayer, Amber Kerkhofs, Harriët Smeding, Maaike Verberne, Sander Idema, Johannes C Baayen, Anton W Pieneman, Christiaan PJ de Kock, Martin Klein, Huibert D Mansvelder
Published in: eLife, Issue 7, 2018, ISSN 2050-084X
DOI: 10.7554/elife.41714

InTool Explorer: An Interactive Exploratory Analysis Tool for Versatile Visualizations of Neuroscientific Data

Author(s): Diana Furcila, Marcos García, Cosmin Toader, Juan Morales, Antonio LaTorre, Ángel Rodríguez, Luis Pastor, Javier DeFelipe, Lidia Alonso-Nanclares
Published in: Frontiers in Neuroanatomy, Issue 13, 2019, ISSN 1662-5129
DOI: 10.3389/fnana.2019.00028

Memory and mental time travel in humans and social robots

Author(s): Tony J. Prescott, Daniel Camilleri, Uriel Martinez-Hernandez, Andreas Damianou, Neil D. Lawrence
Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 374/1771, 2019, Page(s) 20180025, ISSN 0962-8436
DOI: 10.1098/rstb.2018.0025

Columnar clusters in the human motion complex reflect consciously perceived motion axis

Author(s): Marian Schneider, Valentin G. Kemper, Thomas C. Emmerling, Federico De Martino, Rainer Goebel
Published in: Proceedings of the National Academy of Sciences, Issue 116/11, 2019, Page(s) 5096-5101, ISSN 0027-8424
DOI: 10.1073/pnas.1814504116

The spectral exponent of the resting EEG indexes the presence of consciousness during unresponsiveness induced by propofol, xenon, and ketamine

Author(s): Michele Angelo Colombo, Martino Napolitani, Melanie Boly, Olivia Gosseries, Silvia Casarotto, Mario Rosanova, Jean-Francois Brichant, Pierre Boveroux, Steffen Rex, Steven Laureys, Marcello Massimini, Arturo Chieregato, Simone Sarasso
Published in: NeuroImage, Issue 189, 2019, Page(s) 631-644, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.01.024

Large Scale Double-Path Illumination System with Split Field of View for the All-Optical Study of Inter-and Intra-Hemispheric Functional Connectivity on Mice

Author(s): Emilia Conti, Anna Allegra Mascaro, Francesco Pavone
Published in: Methods and Protocols, Issue 2/1, 2019, Page(s) 11, ISSN 2409-9279
DOI: 10.3390/mps2010011

Submillimeter fMRI reveals a layout of dorsal visual cortex in macaques, remarkably similar to New World monkeys

Author(s): Qi Zhu, Wim Vanduffel
Published in: Proceedings of the National Academy of Sciences, Issue 116/6, 2019, Page(s) 2306-2311, ISSN 0027-8424
DOI: 10.1073/pnas.1805561116

Long-Lasting Response Changes in Deep Cerebellar Nuclei in vivo Correlate With Low-Frequency Oscillations

Author(s): Letizia Moscato, Ileana Montagna, Licia De Propris, Simona Tritto, Lisa Mapelli, Egidio D’Angelo
Published in: Frontiers in Cellular Neuroscience, Issue 13, 2019, ISSN 1662-5102
DOI: 10.3389/fncel.2019.00084

Hyper-excitability and hyper-plasticity disrupt cerebellar signal transfer in the IB2 KO mouse model of autism

Author(s): Teresa Soda, Lisa Mapelli, Francesca Locatelli, Laura Botta, Mitchell Goldfarb, Francesca Prestori, Egidio D'Angelo
Published in: The Journal of Neuroscience, 2019, Page(s) 1985-18, ISSN 0270-6474
DOI: 10.1523/jneurosci.1985-18.2019

The Human Brain Project: Responsible Brain Research for the Benefit of Society

Author(s): Arleen Salles, Jan G. Bjaalie, Kathinka Evers, Michele Farisco, B. Tyr Fothergill, Manuel Guerrero, Hannah Maslen, Jeffrey Muller, Tony Prescott, Bernd C. Stahl, Henrik Walter, Karl Zilles, Katrin Amunts
Published in: Neuron, Issue 101/3, 2019, Page(s) 380-384, ISSN 0896-6273
DOI: 10.1016/j.neuron.2019.01.005

Reply to Hua Liu, HaiCun Shi and PingLei Pan: Coordinate based meta-analyses in a medium sized literature: Considerations, limitations and road ahead

Author(s): Masoud Tahmasian, Mojtaba Zarei, Khadijeh Noori, Habibolah Khazaie, Fateme Samea, Kai Spiegelhalder, Simon B. Eickhoff, Eus Van Someren, Claudia R. Eickhoff
Published in: Sleep Medicine Reviews, Issue 42, 2018, Page(s) 236-238, ISSN 1087-0792
DOI: 10.1016/j.smrv.2018.08.004

Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data

Author(s): Guido Trensch, Robin Gutzen, Inga Blundell, Michael Denker, Abigail Morrison
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00081

sPyNNaker: A Software Package for Running PyNN Simulations on SpiNNaker

Author(s): Oliver Rhodes, Petruţ A. Bogdan, Christian Brenninkmeijer, Simon Davidson, Donal Fellows, Andrew Gait, David R. Lester, Mantas Mikaitis, Luis A. Plana, Andrew G. D. Rowley, Alan B. Stokes, Steve B. Furber
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00816

Alterations in Schizophrenia-Associated Genes Can Lead to Increased Power in Delta Oscillations

Author(s): Tuomo Mäki-Marttunen, Florian Krull, Francesco Bettella, Espen Hagen, Solveig Næss, Torbjørn V Ness, Torgeir Moberget, Torbjørn Elvsåshagen, Christoph Metzner, Anna Devor, Andrew G Edwards, Marianne Fyhn, Srdjan Djurovic, Anders M Dale, Ole A Andreassen, Gaute T Einevoll
Published in: Cerebral Cortex, Issue 29/2, 2018, Page(s) 875-891, ISSN 1047-3211
DOI: 10.1093/cercor/bhy291

Towards a supervised classification of neocortical interneuron morphologies

Author(s): Bojan Mihaljević, Pedro Larrañaga, Ruth Benavides-Piccione, Sean Hill, Javier DeFelipe, Concha Bielza
Published in: BMC Bioinformatics, Issue 19/1, 2018, ISSN 1471-2105
DOI: 10.1186/s12859-018-2470-1

Complex Dynamics in Simplified Neuronal Models: Reproducing Golgi Cell Electroresponsiveness

Author(s): Alice Geminiani, Claudia Casellato, Francesca Locatelli, Francesca Prestori, Alessandra Pedrocchi, Egidio D'Angelo
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00088

Spontaneous activity emerging from an inferred network model captures complex spatio-temporal dynamics of spike data

Author(s): Cristiano Capone, Guido Gigante, Paolo Del Giudice
Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
DOI: 10.1038/s41598-018-35433-0

A Cell Atlas for the Mouse Brain

Author(s): Csaba Erö, Marc-Oliver Gewaltig, Daniel Keller, Henry Markram
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00084

Efficient region-based test strategy uncovers genetic risk factors for functional outcome in bipolar disorder

Author(s): Monika Budde, Stefanie Friedrichs, Ney Alliey-Rodriguez, Seth Ament, Judith A. Badner, Wade H. Berrettini, Cinnamon S. Bloss, William Byerley, Sven Cichon, Ashley L. Comes, William Coryell, David W. Craig, Franziska Degenhardt, Howard J. Edenberg, Tatiana Foroud, Andreas J. Forstner, Josef Frank, Elliot S. Gershon, Fernando S. Goes, Tiffany A. Greenwood, Yiran Guo, Maria Hipolito, Leroy Hood, Bren
Published in: European Neuropsychopharmacology, Issue 29/1, 2019, Page(s) 156-170, ISSN 0924-977X
DOI: 10.1016/j.euroneuro.2018.10.005

Assessing robustness against potential publication bias in Activation Likelihood Estimation (ALE) meta-analyses for fMRI

Author(s): Freya Acar, Ruth Seurinck, Simon B. Eickhoff, Beatrijs Moerkerke
Published in: PLOS ONE, Issue 13/11, 2018, Page(s) e0208177, ISSN 1932-6203
DOI: 10.1371/journal.pone.0208177

Figure-ground perception in the awake mouse and neuronal activity elicited by figure-ground stimuli in primary visual cortex

Author(s): Ulf H. Schnabel, Christophe Bossens, Jeannette A. M. Lorteije, Matthew W. Self, Hans Op de Beeck, Pieter R. Roelfsema
Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
DOI: 10.1038/s41598-018-36087-8

Atlases of cognition with large-scale human brain mapping

Author(s): Gaël Varoquaux, Yannick Schwartz, Russell A. Poldrack, Baptiste Gauthier, Danilo Bzdok, Jean-Baptiste Poline, Bertrand Thirion
Published in: PLOS Computational Biology, Issue 14/11, 2018, Page(s) e1006565, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006565

Improved methods for marking active neuron populations

Author(s): Benjamien Moeyaert, Graham Holt, Rajtarun Madangopal, Alberto Perez-Alvarez, Brenna C. Fearey, Nicholas F. Trojanowski, Julia Ledderose, Timothy A. Zolnik, Aniruddha Das, Davina Patel, Timothy A. Brown, Robert N. S. Sachdev, Britta J. Eickholt, Matthew E. Larkum, Gina G. Turrigiano, Hod Dana, Christine E. Gee, Thomas G. Oertner, Bruce T. Hope, Eric R. Schreiter
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-06935-2

Photoswitchable Antimetabolite for Targeted Photoactivated Chemotherapy

Author(s): Carlo Matera, Alexandre M. J. Gomila, Núria Camarero, Michela Libergoli, Concepció Soler, Pau Gorostiza
Published in: Journal of the American Chemical Society, Issue 140/46, 2018, Page(s) 15764-15773, ISSN 0002-7863
DOI: 10.1021/jacs.8b08249

eQTL of KCNK2 regionally influences the brain sulcal widening: evidence from 15,597 UK Biobank participants with neuroimaging data

Author(s): Yann Le Guen, Cathy Philippe, Denis Riviere, Hervé Lemaitre, Antoine Grigis, Clara Fischer, Ghislaine Dehaene-Lambertz, Jean-François Mangin, Vincent Frouin
Published in: Brain Structure and Function, Issue 224/2, 2019, Page(s) 847-857, ISSN 1863-2653
DOI: 10.1007/s00429-018-1808-9

Biocytin Recovery and 3D Reconstructions of Filled Hippocampal CA2 Interneurons

Author(s): Georgia Economides, Svenja Falk, Audrey Mercer
Published in: Journal of Visualized Experiments, Issue 141, 2018, ISSN 1940-087X
DOI: 10.3791/58592

A regularity index for dendrites - local statistics of a neuron's input space

Author(s): Laura Anton-Sanchez, Felix Effenberger, Concha Bielza, Pedro Larrañaga, Hermann Cuntz
Published in: PLOS Computational Biology, Issue 14/11, 2018, Page(s) e1006593, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006593

Lateral inhibition by Martinotti interneurons is facilitated by cholinergic inputs in human and mouse neocortex

Author(s): Joshua Obermayer, Tim S. Heistek, Amber Kerkhofs, Natalia A. Goriounova, Tim Kroon, Johannes C. Baayen, Sander Idema, Guilherme Testa-Silva, Jonathan J. Couey, Huibert D. Mansvelder
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-06628-w

A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas

Author(s): Maximilian Schmidt, Rembrandt Bakker, Kelly Shen, Gleb Bezgin, Markus Diesmann, Sacha Jennifer van Albada
Published in: PLOS Computational Biology, Issue 14/10, 2018, Page(s) e1006359, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006359

Memory-Efficient Deep Learning on a SpiNNaker 2 Prototype

Author(s): Chen Liu, Guillaume Bellec, Bernhard Vogginger, David Kappel, Johannes Partzsch, Felix Neumärker, Sebastian Höppner, Wolfgang Maass, Steve B. Furber, Robert Legenstein, Christian G. Mayr
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00840

Propofol-induced unresponsiveness is associated with impaired feedforward connectivity in cortical hierarchy

Author(s): R.D. Sanders, M.I. Banks, M. Darracq, R. Moran, J. Sleigh, O. Gosseries, V. Bonhomme, J.F. Brichant, M. Rosanova, A. Raz, G. Tononi, M. Massimini, S. Laureys, M. Boly
Published in: British Journal of Anaesthesia, Issue 121/5, 2018, Page(s) 1084-1096, ISSN 0007-0912
DOI: 10.1016/j.bja.2018.07.006

VIOLA—A Multi-Purpose and Web-Based Visualization Tool for Neuronal-Network Simulation Output

Author(s): Johanna Senk, Corto Carde, Espen Hagen, Torsten W. Kuhlen, Markus Diesmann, Benjamin Weyers
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00075

Neural timing of stimulus events with microsecond precision

Author(s): Jinhong Luo, Silvio Macias, Torbjørn V. Ness, Gaute T. Einevoll, Kechen Zhang, Cynthia F. Moss
Published in: PLOS Biology, Issue 16/10, 2018, Page(s) e2006422, ISSN 1545-7885
DOI: 10.1371/journal.pbio.2006422

Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons

Author(s): Ulisse Ferrari, Stéphane Deny, Matthew Chalk, Gašper Tkačik, Olivier Marre, Thierry Mora
Published in: Physical Review E, Issue 98/4, 2018, ISSN 2470-0045
DOI: 10.1103/physreve.98.042410

A Simple Model for Low Variability in Neural Spike Trains

Author(s): Ulisse Ferrari, Stéphane Deny, Olivier Marre, Thierry Mora
Published in: Neural Computation, Issue 30/11, 2018, Page(s) 3009-3036, ISSN 0899-7667
DOI: 10.1162/neco_a_01125

Neural correlates of action: Comparing meta-analyses of imagery, observation, and execution


Published in: ISSN 0149-7634
DOI: 10.1016/j.neubiorev.2018.08.003

Role of Extracellular Loops and Membrane Lipids for Ligand Recognition in the Neuronal Adenosine Receptor Type 2A: An Enhanced Sampling Simulation Study

Author(s): Ruyin Cao, Alejandro Giorgetti, Andreas Bauer, Bernd Neumaier, Giulia Rossetti, Paolo Carloni
Published in: Molecules, Issue 23/10, 2018, Page(s) 2616, ISSN 1420-3049
DOI: 10.3390/molecules23102616

Code Generation in Computational Neuroscience: A Review of Tools and Techniques

Author(s): Inga Blundell, Romain Brette, Thomas A. Cleland, Thomas G. Close, Daniel Coca, Andrew P. Davison, Sandra Diaz-Pier, Carlos Fernandez Musoles, Padraig Gleeson, Dan F. M. Goodman, Michael Hines, Michael W. Hopkins, Pramod Kumbhar, David R. Lester, Bóris Marin, Abigail Morrison, Eric Müller, Thomas Nowotny, Alexander Peyser, Dimitri Plotnikov, Paul Richmond, Andrew Rowley, Bernhard Rumpe, Marcel St
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00068

Evoked Alpha Power is Reduced in Disconnected Consciousness During Sleep and Anesthesia

Author(s): Matthieu Darracq, Chadd M. Funk, Daniel Polyakov, Brady Riedner, Olivia Gosseries, Jaakko O. Nieminen, Vincent Bonhomme, Jean-Francois Brichant, Melanie Boly, Steven Laureys, Giulio Tononi, Robert D. Sanders
Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
DOI: 10.1038/s41598-018-34957-9

Sleep-like cortical OFF-periods disrupt causality and complexity in the brain of unresponsive wakefulness syndrome patients

Author(s): M. Rosanova, M. Fecchio, S. Casarotto, S. Sarasso, A. G. Casali, A. Pigorini, A. Comanducci, F. Seregni, G. Devalle, G. Citerio, O. Bodart, M. Boly, O. Gosseries, S. Laureys, M. Massimini
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-06871-1

Imaging-based parcellations of the human brain

Author(s): Simon B. Eickhoff, B. T. Thomas Yeo, Sarah Genon
Published in: Nature Reviews Neuroscience, Issue 19/11, 2018, Page(s) 672-686, ISSN 1471-003X
DOI: 10.1038/s41583-018-0071-7

Electrical spinal cord stimulation must preserve proprioception to enable locomotion in humans with spinal cord injury

Author(s): Emanuele Formento, Karen Minassian, Fabien Wagner, Jean Baptiste Mignardot, Camille G. Le Goff-Mignardot, Andreas Rowald, Jocelyne Bloch, Silvestro Micera, Marco Capogrosso, Gregoire Courtine
Published in: Nature Neuroscience, Issue 21/12, 2018, Page(s) 1728-1741, ISSN 1097-6256
DOI: 10.1038/s41593-018-0262-6

CABots and Other Neural Agents

Author(s): Christian Huyck, Ian Mitchell
Published in: Frontiers in Neurorobotics, Issue 12, 2018, ISSN 1662-5218
DOI: 10.3389/fnbot.2018.00079

Meditation-induced modulation of brain response to transcranial magnetic stimulation

Author(s): Olivier Bodart, Matteo Fecchio, Marcello Massimini, Sarah Wannez, Alessandra Virgillito, Silvia Casarotto, Mario Rosanova, Antoine Lutz, Matthieu Ricard, Steven Laureys, Olivia Gosseries
Published in: Brain Stimulation, Issue 11/6, 2018, Page(s) 1397-1400, ISSN 1935-861X
DOI: 10.1016/j.brs.2018.08.018

High-Fidelity Imaging in Brain-Wide Structural Studies Using Light-Sheet Microscopy

Author(s): M. Caroline Müllenbroich, Ludovico Silvestri, Antonino P. Di Giovanna, Giacomo Mazzamuto, Irene Costantini, Leonardo Sacconi, Francesco S. Pavone
Published in: eneuro, Issue 5/6, 2018, Page(s) ENEURO.0124-18.2018, ISSN 2373-2822
DOI: 10.1523/eneuro.0124-18.2018

Automatically Selecting a Suitable Integration Scheme for Systems of Differential Equations in Neuron Models

Author(s): Inga Blundell, Dimitri Plotnikov, Jochen M. Eppler, Abigail Morrison
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00050

Optimal Sequence Memory in Driven Random Networks

Author(s): Jannis Schuecker, Sven Goedeke, Moritz Helias
Published in: Physical Review X, Issue 8/4, 2018, ISSN 2160-3308
DOI: 10.1103/physrevx.8.041029

Sensory Processing Across Conscious and Nonconscious Brain States: From Single Neurons to Distributed Networks for Inferential Representation

Author(s): Umberto Olcese, Matthijs N. Oude Lohuis, Cyriel M. A. Pennartz
Published in: Frontiers in Systems Neuroscience, Issue 12, 2018, ISSN 1662-5137
DOI: 10.3389/fnsys.2018.00049

Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies

Author(s): Ingvild E. Bjerke, Martin Øvsthus, Krister A. Andersson, Camilla H. Blixhavn, Heidi Kleven, Sharon C. Yates, Maja A. Puchades, Jan G. Bjaalie, Trygve B. Leergaard
Published in: Frontiers in Neuroanatomy, Issue 12, 2018, ISSN 1662-5129
DOI: 10.3389/fnana.2018.00082

Targeted neurotechnology restores walking in humans with spinal cord injury

Author(s): Fabien B. Wagner, Jean-Baptiste Mignardot, Camille G. Le Goff-Mignardot, Robin Demesmaeker, Salif Komi, Marco Capogrosso, Andreas Rowald, Ismael Seáñez, Miroslav Caban, Elvira Pirondini, Molywan Vat, Laura A. McCracken, Roman Heimgartner, Isabelle Fodor, Anne Watrin, Perrine Seguin, Edoardo Paoles, Katrien Van Den Keybus, Grégoire Eberle, Brigitte Schurch, Etienne Pralong, Fabio Becce, John Pri
Published in: Nature, Issue 563/7729, 2018, Page(s) 65-71, ISSN 0028-0836
DOI: 10.1038/s41586-018-0649-2

Conditioning sharpens the spatial representation of rewarded stimuli in mouse primary visual cortex

Author(s): Pieter M Goltstein, Guido T Meijer, Cyriel MA Pennartz
Published in: eLife, Issue 7, 2018, ISSN 2050-084X
DOI: 10.7554/elife.37683

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow

Author(s): Rosanna Migliore, Carmen A. Lupascu, Luca L. Bologna, Armando Romani, Jean-Denis Courcol, Stefano Antonel, Werner A. H. Van Geit, Alex M. Thomson, Audrey Mercer, Sigrun Lange, Joanne Falck, Christian A. Rössert, Ying Shi, Olivier Hagens, Maurizio Pezzoli, Tamas F. Freund, Szabolcs Kali, Eilif B. Muller, Felix Schürmann, Henry Markram, Michele Migliore
Published in: PLOS Computational Biology, Issue 14/9, 2018, Page(s) e1006423, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006423

Derivation of Fiber Orientations From Oblique Views Through Human Brain Sections in 3D-Polarized Light Imaging

Author(s): Daniel Schmitz, Sascha E. A. Muenzing, Martin Schober, Nicole Schubert, Martina Minnerop, Thomas Lippert, Katrin Amunts, Markus Axer
Published in: Frontiers in Neuroanatomy, Issue 12, 2018, ISSN 1662-5129
DOI: 10.3389/fnana.2018.00075

Combining biophysical modeling and deep learning for multielectrode array neuron localization and classification

Author(s): Alessio P. Buccino, Michael Kordovan, Torbjørn V. Ness, Benjamin Merkt, Philipp D. Häfliger, Marianne Fyhn, Gert Cauwenberghs, Stefan Rotter, Gaute T. Einevoll
Published in: Journal of Neurophysiology, Issue 120/3, 2018, Page(s) 1212-1232, ISSN 0022-3077
DOI: 10.1152/jn.00210.2018

Architecture of the Mouse Brain Synaptome

Author(s): Fei Zhu, Mélissa Cizeron, Zhen Qiu, Ruth Benavides-Piccione, Maksym V. Kopanitsa, Nathan G. Skene, Babis Koniaris, Javier DeFelipe, Erik Fransén, Noboru H. Komiyama, Seth G.N. Grant
Published in: Neuron, Issue 99/4, 2018, Page(s) 781-799.e10, ISSN 0896-6273
DOI: 10.1016/j.neuron.2018.07.007

Audiovisual Integration Enhances Stimulus Detection Performance in Mice

Author(s): Guido T. Meijer, Jean L. Pie, Thomas L. Dolman, Cyriel M. A. Pennartz, Carien S. Lansink
Published in: Frontiers in Behavioral Neuroscience, Issue 12, 2018, ISSN 1662-5153
DOI: 10.3389/fnbeh.2018.00231

Firing-rate models for neurons with a broad repertoire of spiking behaviors

Author(s): Thomas Heiberg, Birgit Kriener, Tom Tetzlaff, Gaute T. Einevoll, Hans E. Plesser
Published in: Journal of Computational Neuroscience, Issue 45/2, 2018, Page(s) 103-132, ISSN 0929-5313
DOI: 10.1007/s10827-018-0693-9

Cytoarchitecture, probability maps, and functions of the human supplementary and pre-supplementary motor areas

Author(s): Jianghai Ruan, Sebastian Bludau, Nicola Palomero-Gallagher, Svenja Caspers, Hartmut Mohlberg, Simon B. Eickhoff, Rüdiger J. Seitz, Katrin Amunts
Published in: Brain Structure and Function, Issue 223/9, 2018, Page(s) 4169-4186, ISSN 1863-2653
DOI: 10.1007/s00429-018-1738-6

Conscious While Being Considered in an Unresponsive Wakefulness Syndrome for 20 Years

Author(s): Audrey Vanhaudenhuyse, Vanessa Charland-Verville, Aurore Thibaut, Camille Chatelle, Jean-Flory L. Tshibanda, Audrey Maudoux, Marie-Elisabeth Faymonville, Steven Laureys, Olivia Gosseries
Published in: Frontiers in Neurology, Issue 9, 2018, ISSN 1664-2295
DOI: 10.3389/fneur.2018.00671

Whole-Brain Vasculature Reconstruction at the Single Capillary Level

Author(s): Antonino Paolo Di Giovanna, Alessandro Tibo, Ludovico Silvestri, Marie Caroline Müllenbroich, Irene Costantini, Anna Letizia Allegra Mascaro, Leonardo Sacconi, Paolo Frasconi, Francesco Saverio Pavone
Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
DOI: 10.1038/s41598-018-30533-3

Model-based spatial navigation in the hippocampus-ventral striatum circuit: A computational analysis

Author(s): Ivilin Peev Stoianov, Cyriel M. A. Pennartz, Carien S. Lansink, Giovani Pezzulo
Published in: PLOS Computational Biology, Issue 14/9, 2018, Page(s) e1006316, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006316

The Combinatorial Creature: Cortical Phenotypes within and across Lifetimes

Author(s): Leah A. Krubitzer, Tony J. Prescott
Published in: Trends in Neurosciences, Issue 41/10, 2018, Page(s) 744-762, ISSN 0166-2236
DOI: 10.1016/j.tins.2018.08.002

Brain, Behavior, and Cognitive Interplay in Disorders of Consciousness: A Multiple Case Study

Author(s): Charlène Aubinet, Lesley Murphy, Mohamed A. Bahri, Stephen K. Larroque, Helena Cassol, Jitka Annen, Manon Carrière, Sarah Wannez, Aurore Thibaut, Steven Laureys, Olivia Gosseries
Published in: Frontiers in Neurology, Issue 9, 2018, ISSN 1664-2295
DOI: 10.3389/fneur.2018.00665

Acetylcholine Neurotransmitter Receptor Densities in the Striatum of Hemiparkinsonian Rats Following Botulinum Neurotoxin-A Injection

Author(s): Teresa Mann, Karl Zilles, Felix Klawitter, Markus Cremer, Alexander Hawlitschka, Nicola Palomero-Gallagher, Oliver Schmitt, Andreas Wree
Published in: Frontiers in Neuroanatomy, Issue 12, 2018, ISSN 1662-5129
DOI: 10.3389/fnana.2018.00065

Probabilistic electrical stimulation mapping of human medial frontal cortex

Author(s): Gianluca Trevisi, Simon B. Eickhoff, Fahmida Chowdhury, Ashwani Jha, Roman Rodionov, Mark Nowell, Anna Miserocchi, Andrew W. McEvoy, Parashkev Nachev, Beate Diehl
Published in: Cortex, Issue 109, 2018, Page(s) 336-346, ISSN 0010-9452
DOI: 10.1016/j.cortex.2018.06.015

A lack of consistent brain alterations in insomnia disorder: An activation likelihood estimation meta-analysis

Author(s): Masoud Tahmasian, Khadijeh Noori, Fateme Samea, Mojtaba Zarei, Kai Spiegelhalder, Simon B. Eickhoff, Eus Van Someren, Habibolah Khazaie, Claudia R. Eickhoff
Published in: Sleep Medicine Reviews, Issue 42, 2018, Page(s) 111-118, ISSN 1087-0792
DOI: 10.1016/j.smrv.2018.07.004

Real-time visuomotor behavior and electrophysiology recording setup for use with humans and monkeys

Author(s): Marcel Jan de Haan, Thomas Brochier, Sonja Grün, Alexa Riehle, Frédéric V. Barthélemy
Published in: Journal of Neurophysiology, Issue 120/2, 2018, Page(s) 539-552, ISSN 0022-3077
DOI: 10.1152/jn.00262.2017

A Mixed-Signal Structured AdEx Neuron for Accelerated Neuromorphic Cores

Author(s): Syed Ahmed Aamir, Paul Muller, Gerd Kiene, Laura Kriener, Yannik Stradmann, Andreas Grubl, Johannes Schemmel, Karlheinz Meier
Published in: IEEE Transactions on Biomedical Circuits and Systems, Issue 12/5, 2018, Page(s) 1027-1037, ISSN 1932-4545
DOI: 10.1109/tbcas.2018.2848203

Regional Diversity in the Postsynaptic Proteome of the Mouse Brain

Author(s): Marcia Roy, Oksana Sorokina, Colin McLean, Silvia Tapia-González, Javier DeFelipe, J. Armstrong, Seth Grant
Published in: Proteomes, Issue 6/3, 2018, Page(s) 31, ISSN 2227-7382
DOI: 10.3390/proteomes6030031

A Quantitative Study on the Distribution of Mitochondria in the Neuropil of the Juvenile Rat Somatosensory Cortex

Author(s): A Santuy, M Turégano-López, J R Rodríguez, L Alonso-Nanclares, J DeFelipe, A Merchán-Pérez
Published in: Cerebral Cortex, Issue 28/10, 2018, Page(s) 3673-3684, ISSN 1047-3211
DOI: 10.1093/cercor/bhy159

Eligibility Traces and Plasticity on Behavioral Time Scales: Experimental Support of NeoHebbian Three-Factor Learning Rules

Author(s): Wulfram Gerstner, Marco Lehmann, Vasiliki Liakoni, Dane Corneil, Johanni Brea
Published in: Frontiers in Neural Circuits, Issue 12, 2018, ISSN 1662-5110
DOI: 10.3389/fncir.2018.00053

Activations of deep convolutional neural networks are aligned with gamma band activity of human visual cortex

Author(s): Ilya Kuzovkin, Raul Vicente, Mathilde Petton, Jean-Philippe Lachaux, Monica Baciu, Philippe Kahane, Sylvain Rheims, Juan R. Vidal, Jaan Aru
Published in: Communications Biology, Issue 1/1, 2018, ISSN 2399-3642
DOI: 10.1038/s42003-018-0110-y

Identification of ADHD risk genes in extended pedigrees by combining linkage analysis and whole-exome sequencing

Author(s): Jordi Corominas, Marieke Klein, Tetyana Zayats, Olga Rivero, Georg C. Ziegler, Marc Pauper, Kornelia Neveling, Geert Poelmans, Charline Jansch, Evgeniy Svirin, Julia Geissler, Heike Weber, Andreas Reif, Alejandro Arias Vasquez, Tessel E. Galesloot, Lambertus A. L. M. Kiemeney, Jan K. Buitelaar, Josep-Antoni Ramos-Quiroga, Bru Cormand, Marta Ribasés, Kristian Hveem, Maiken Elvestad Gabrielsen, Per
Published in: Molecular Psychiatry, 2018, ISSN 1359-4184
DOI: 10.1038/s41380-018-0210-6

Cerebrospinal Fluid-Contacting Neurons Sense pH Changes and Motion in the Hypothalamus

Author(s): Elham Jalalvand, Brita Robertson, Hervé Tostivint, Peter Löw, Peter Wallén, Sten Grillner
Published in: The Journal of Neuroscience, Issue 38/35, 2018, Page(s) 7713-7724, ISSN 0270-6474
DOI: 10.1523/jneurosci.3359-17.2018

Unilateral Botulinum Neurotoxin-A Injection into the Striatum of C57BL/6 Mice Leads to a Different Motor Behavior Compared with Rats

Author(s): Veronica Antipova, Andreas Wree, Carsten Holzmann, Teresa Mann, Nicola Palomero-Gallagher, Karl Zilles, Oliver Schmitt, Alexander Hawlitschka
Published in: Toxins, Issue 10/7, 2018, Page(s) 295, ISSN 2072-6651
DOI: 10.3390/toxins10070295

A Perspective on Cortical Layering and Layer-Spanning Neuronal Elements

Author(s): Matthew E. Larkum, Lucy S. Petro, Robert N. S. Sachdev, Lars Muckli
Published in: Frontiers in Neuroanatomy, Issue 12, 2018, ISSN 1662-5129
DOI: 10.3389/fnana.2018.00056

Parallel Distribution of an Inner Hair Cell and Auditory Nerve Model for Real-Time Application

Author(s): Robert James, Jim Garside, Luis A. Plana, Andrew Rowley, Steve B. Furber
Published in: IEEE Transactions on Biomedical Circuits and Systems, Issue 12/5, 2018, Page(s) 1018-1026, ISSN 1932-4545
DOI: 10.1109/tbcas.2018.2847562

Maximum-entropy models reveal the excitatory and inhibitory correlation structures in cortical neuronal activity

Author(s): Trang-Anh Nghiem, Bartosz Telenczuk, Olivier Marre, Alain Destexhe, Ulisse Ferrari
Published in: Physical Review E, Issue 98/1, 2018, ISSN 2470-0045
DOI: 10.1103/physreve.98.012402

Uncertainty quantification, propagation and characterization by Bayesian analysis combined with global sensitivity analysis applied to dynamical intracellular pathway models

Author(s): Olivia Eriksson, Alexandra Jauhiainen, Sara Maad Sasane, Andrei Kramer, Anu G Nair, Carolina Sartorius, Jeanette Hellgren Kotaleski
Published in: Bioinformatics, Issue 35/2, 2018, Page(s) 284-292, ISSN 1367-4803
DOI: 10.1093/bioinformatics/bty607

Spatial cell firing during virtual navigation of open arenas by head-restrained mice

Author(s): Guifen Chen, John Andrew King, Yi Lu, Francesca Cacucci, Neil Burgess
Published in: eLife, Issue 7, 2018, ISSN 2050-084X
DOI: 10.7554/elife.34789

Behavioral Context Determines Network State and Variability Dynamics in Monkey Motor Cortex

Author(s): Alexa Riehle, Thomas Brochier, Martin Nawrot, Sonja Grün
Published in: Frontiers in Neural Circuits, Issue 12, 2018, ISSN 1662-5110
DOI: 10.3389/fncir.2018.00052

Excitable neuronal assemblies with adaptation as a building block of brain circuits for velocity-controlled signal propagation

Author(s): Hesam Setareh, Moritz Deger, Wulfram Gerstner
Published in: PLOS Computational Biology, Issue 14/7, 2018, Page(s) e1006216, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006216

Investigating large-scale brain dynamics using field potential recordings: analysis and interpretation

Author(s): Bijan Pesaran, Martin Vinck, Gaute T. Einevoll, Anton Sirota, Pascal Fries, Markus Siegel, Wilson Truccolo, Charles E. Schroeder, Ramesh Srinivasan
Published in: Nature Neuroscience, Issue 21/7, 2018, Page(s) 903-919, ISSN 1097-6256
DOI: 10.1038/s41593-018-0171-8

Apical Function in Neocortical Pyramidal Cells: A Common Pathway by Which General Anesthetics Can Affect Mental State

Author(s): William A. Phillips, Talis Bachmann, Johan F. Storm
Published in: Frontiers in Neural Circuits, Issue 12, 2018, ISSN 1662-5110
DOI: 10.3389/fncir.2018.00050

h-Type Membrane Current Shapes the Local Field Potential from Populations of Pyramidal Neurons

Author(s): Torbjørn V. Ness, Michiel W.H. Remme, Gaute T. Einevoll
Published in: The Journal of Neuroscience, Issue 38/26, 2018, Page(s) 6011-6024, ISSN 0270-6474
DOI: 10.1523/jneurosci.3278-17.2018

Structural Plasticity on the SpiNNaker Many-Core Neuromorphic System

Author(s): Petruț A. Bogdan, Andrew G. D. Rowley, Oliver Rhodes, Steve B. Furber
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00434

An Accelerated LIF Neuronal Network Array for a Large-Scale Mixed-Signal Neuromorphic Architecture

Author(s): Syed Ahmed Aamir, Yannik Stradmann, Paul Muller, Christian Pehle, Andreas Hartel, Andreas Grubl, Johannes Schemmel, Karlheinz Meier
Published in: IEEE Transactions on Circuits and Systems I: Regular Papers, Issue 65/12, 2018, Page(s) 4299-4312, ISSN 1549-8328
DOI: 10.1109/tcsi.2018.2840718

Human Cortical Pyramidal Neurons: From Spines to Spikes via Models

Author(s): Guy Eyal, Matthijs B. Verhoog, Guilherme Testa-Silva, Yair Deitcher, Ruth Benavides-Piccione, Javier DeFelipe, Christiaan P. J. de Kock, Huibert D. Mansvelder, Idan Segev
Published in: Frontiers in Cellular Neuroscience, Issue 12, 2018, ISSN 1662-5102
DOI: 10.3389/fncel.2018.00181

Phase-lags in large scale brain synchronization: Methodological considerations and in-silico analysis

Author(s): Spase Petkoski, J. Matias Palva, Viktor K. Jirsa
Published in: PLOS Computational Biology, Issue 14/7, 2018, Page(s) e1006160, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006160

Spiking neurons with short-term synaptic plasticity form superior generative networks

Author(s): Luziwei Leng, Roman Martel, Oliver Breitwieser, Ilja Bytschok, Walter Senn, Johannes Schemmel, Karlheinz Meier, Mihai A. Petrovici
Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
DOI: 10.1038/s41598-018-28999-2

Identification and visualization of protein binding regions with the ArDock server

Author(s): Sébastien Reille, Mélanie Garnier, Xavier Robert, Patrice Gouet, Juliette Martin, Guillaume Launay
Published in: Nucleic Acids Research, Issue 46/W1, 2018, Page(s) W417-W422, ISSN 0305-1048
DOI: 10.1093/nar/gky472

The role of ethics in data governance of large neuro-ICT projects

Author(s): Bernd Carsten Stahl, Stephen Rainey, Emma Harris, B Tyr Fothergill
Published in: Journal of the American Medical Informatics Association, Issue 25/8, 2018, Page(s) 1099-1107, ISSN 1067-5027
DOI: 10.1093/jamia/ocy040

A molecular dynamics study of adenylyl cyclase: The impact of ATP and G-protein binding

Author(s): Elisa Frezza, Juliette Martin, Richard Lavery
Published in: PLOS ONE, Issue 13/4, 2018, Page(s) e0196207, ISSN 1932-6203
DOI: 10.1371/journal.pone.0196207

Contribution of the Axon Initial Segment to Action Potentials Recorded Extracellularly

Author(s): Maria Teleńczuk, Romain Brette, Alain Destexhe, Bartosz Teleńczuk
Published in: eneuro, Issue 5/3, 2018, Page(s) ENEURO.0068-18.2018, ISSN 2373-2822
DOI: 10.1523/eneuro.0068-18.2018

Individual Brain Charting, a high-resolution fMRI dataset for cognitive mapping

Author(s): Ana Luísa Pinho, Alexis Amadon, Torsten Ruest, Murielle Fabre, Elvis Dohmatob, Isabelle Denghien, Chantal Ginisty, Séverine Becuwe-Desmidt, Séverine Roger, Laurence Laurier, Véronique Joly-Testault, Gaëlle Médiouni-Cloarec, Christine Doublé, Bernadette Martins, Philippe Pinel, Evelyn Eger, Gaël Varoquaux, Christophe Pallier, Stanislas Dehaene, Lucie Hertz-Pannier, Bertrand Thirion
Published in: Scientific Data, Issue 5, 2018, Page(s) 180105, ISSN 2052-4463
DOI: 10.1038/sdata.2018.105

Impaired hippocampal representation of place in the Fmr1-knockout mouse model of fragile X syndrome

Author(s): Tara Arbab, Cyriel M. A. Pennartz, Francesco P. Battaglia
Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322
DOI: 10.1038/s41598-018-26853-z

3D morphology-based clustering and simulation of human pyramidal cell dendritic spines

Author(s): Sergio Luengo-Sanchez, Isabel Fernaud-Espinosa, Concha Bielza, Ruth Benavides-Piccione, Pedro Larrañaga, Javier DeFelipe
Published in: PLOS Computational Biology, Issue 14/6, 2018, Page(s) e1006221, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006221

Performance Comparison of the Digital Neuromorphic Hardware SpiNNaker and the Neural Network Simulation Software NEST for a Full-Scale Cortical Microcircuit Model

Author(s): Sacha J. van Albada, Andrew G. Rowley, Johanna Senk, Michael Hopkins, Maximilian Schmidt, Alan B. Stokes, David R. Lester, Markus Diesmann, Steve B. Furber
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00291

Framework based on communicability and flow to analyze complex network dynamics

Author(s): M. Gilson, N. E. Kouvaris, G. Deco, G. Zamora-López
Published in: Physical Review E, Issue 97/5, 2018, ISSN 2470-0045
DOI: 10.1103/physreve.97.052301

Randomized controlled trial of home-based 4-week tDCS in chronic minimally conscious state

Author(s): Géraldine Martens, Nicolas Lejeune, Anthony Terrence O'Brien, Felipe Fregni, Charlotte Martial, Sarah Wannez, Steven Laureys, Aurore Thibaut
Published in: Brain Stimulation, Issue 11/5, 2018, Page(s) 982-990, ISSN 1935-861X
DOI: 10.1016/j.brs.2018.04.021

A Digital Hardware Realization for Spiking Model of Cutaneous Mechanoreceptor

Author(s): Nima Salimi-Nezhad, Mahmood Amiri, Egidio Falotico, Cecilia Laschi
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00322

MultiMap: A Tool to Automatically Extract and Analyse Spatial Microscopic Data From Large Stacks of Confocal Microscopy Images

Author(s): Gherardo Varando, Ruth Benavides-Piccione, Alberto Muñoz, Asta Kastanauskaite, Concha Bielza, Pedro Larrañaga, Javier DeFelipe
Published in: Frontiers in Neuroanatomy, Issue 12, 2018, ISSN 1662-5129
DOI: 10.3389/fnana.2018.00037

Commentary: Locus Coeruleus Ablation Exacerbates Cognitive Deficits, Neuropathology, and Lethality in P301S Tau Transgenic Mice

Author(s): Matthew J. Betts, Alexander J. Ehrenberg, Dorothea Hämmerer, Emrah Düzel
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00401

The Predictive Coding Account of Psychosis

Author(s): Philipp Sterzer, Rick A. Adams, Paul Fletcher, Chris Frith, Stephen M. Lawrie, Lars Muckli, Predrag Petrovic, Peter Uhlhaas, Martin Voss, Philip R. Corlett
Published in: Biological Psychiatry, Issue 84/9, 2018, Page(s) 634-643, ISSN 0006-3223
DOI: 10.1016/j.biopsych.2018.05.015

Extracting orthogonal subject- and condition-specific signatures from fMRI data using whole-brain effective connectivity

Author(s): Vicente Pallarés, Andrea Insabato, Ana Sanjuán, Simone Kühn, Dante Mantini, Gustavo Deco, Matthieu Gilson
Published in: NeuroImage, Issue 178, 2018, Page(s) 238-254, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2018.04.070

BCI Performance and Brain Metabolism Profile in Severely Brain-Injured Patients Without Response to Command at Bedside

Author(s): Jitka Annen, Séverine Blandiaux, Nicolas Lejeune, Mohamed A. Bahri, Aurore Thibaut, Woosang Cho, Christoph Guger, Camille Chatelle, Steven Laureys
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00370

Single-layer graphene modulates neuronal communication and augments membrane ion currents

Author(s): Niccolò Paolo Pampaloni, Martin Lottner, Michele Giugliano, Alessia Matruglio, Francesco D’Amico, Maurizio Prato, Josè Antonio Garrido, Laura Ballerini, Denis Scaini
Published in: Nature Nanotechnology, Issue 13/8, 2018, Page(s) 755-764, ISSN 1748-3387
DOI: 10.1038/s41565-018-0163-6

Large-Scale Brain Simulation and Disorders of Consciousness. Mapping Technical and Conceptual Issues

Author(s): Michele Farisco, Jeanette H. Kotaleski, Kathinka Evers
Published in: Frontiers in Psychology, Issue 9, 2018, ISSN 1664-1078
DOI: 10.3389/fpsyg.2018.00585

Mapping Cortical Laminar Structure in the 3D BigBrain

Author(s): Konrad Wagstyl, Claude Lepage, Sebastian Bludau, Karl Zilles, Paul C Fletcher, Katrin Amunts, Alan C Evans
Published in: Cerebral Cortex, Issue 28/7, 2018, Page(s) 2551-2562, ISSN 1047-3211
DOI: 10.1093/cercor/bhy074

Computational Models for Calcium-Mediated Astrocyte Functions

Author(s): Tiina Manninen, Riikka Havela, Marja-Leena Linne
Published in: Frontiers in Computational Neuroscience, Issue 12, 2018, ISSN 1662-5188
DOI: 10.3389/fncom.2018.00014

Scale-freeness or partial synchronization in neural mass phase oscillator networks: Pick one of two?

Author(s): Andreas Daffertshofer, Robert Ton, Bastian Pietras, Morten L. Kringelbach, Gustavo Deco
Published in: NeuroImage, Issue 180, 2018, Page(s) 428-441, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2018.03.070

Resistance to eye opening in patients with disorders of consciousness

Author(s): Hjalmar Jochem van Ommen, Aurore Thibaut, Audrey Vanhaudenhuyse, Lizette Heine, Vanessa Charland-Verville, Sarah Wannez, Olivier Bodart, Steven Laureys, Olivia Gosseries
Published in: Journal of Neurology, Issue 265/6, 2018, Page(s) 1376-1380, ISSN 0340-5354
DOI: 10.1007/s00415-018-8849-0

A Dynamic Connectome Supports the Emergence of Stable Computational Function of Neural Circuits through Reward-Based Learning

Author(s): David Kappel, Robert Legenstein, Stefan Habenschuss, Michael Hsieh, Wolfgang Maass
Published in: eneuro, Issue 5/2, 2018, Page(s) ENEURO.0301-17.2018, ISSN 2373-2822
DOI: 10.1523/eneuro.0301-17.2018

Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures

Author(s): Tiina Manninen, Jugoslava Aćimović, Riikka Havela, Heidi Teppola, Marja-Leena Linne
Published in: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00020

Molecular composition of the human primary visual cortex profiled by multimodal mass spectrometry imaging

Author(s): Estibaliz González de San Román, Hans-Jürgen Bidmon, Milena Malisic, Iuliana Susnea, Astrid Küppers, Rene Hübbers, Andreas Wree, Volker Nischwitz, Katrin Amunts, Pitter F. Huesgen
Published in: Brain Structure and Function, Issue 223/6, 2018, Page(s) 2767-2783, ISSN 1863-2653
DOI: 10.1007/s00429-018-1660-y

bnclassify: Learning Bayesian Network Classifiers

Author(s): Bojan Mihaljević, Concha Bielza, Pedro Larrañaga
Published in: The R Journal, Issue 10/2, 2019, Page(s) 455, ISSN 2073-4859
DOI: 10.32614/rj-2018-073

A neural-level model of spatial memory and imagery

Author(s): Andrej Bicanski, Neil Burgess
Published in: eLIFE, 2018, ISSN 2050-084X
DOI: 10.7554/elife.33752.001

Criteria on Balance, Stability, and Excitability in Cortical Networks for Constraining Computational Models

Author(s): Andrei Maksimov, Markus Diesmann, Sacha J. van Albada
Published in: Frontiers in Computational Neuroscience, Issue 12, 2018, ISSN 1662-5188
DOI: 10.3389/fncom.2018.00044

[Re] A neural model of the saccade generator in the reticular formation

Author(s): Mario Senden, Jannis Schuecker, Jan Hahne, Markus Diesmann, Rainer Goebel
Published in: ReScience, 2018, ISSN 2430-3658
DOI: 10.5281/zenodo.1241004

An Ion-Permeable State of the Glycine Receptor Captured by Molecular Dynamics

Author(s): Adrien Henri Cerdan, Nicolas Éric Martin, Marco Cecchini
Published in: Structure, Issue 26/11, 2018, Page(s) 1555-1562.e4, ISSN 0969-2126
DOI: 10.1016/j.str.2018.07.019

Neuroethics and Philosophy in Responsible Research and Innovation: The Case of the Human Brain Project

Author(s): Arleen Salles, Kathinka Evers, Michele Farisco
Published in: Neuroethics, 2018, ISSN 1874-5490
DOI: 10.1007/s12152-018-9372-9

Searching for visual features that explain response variance of face neurons in inferior temporal cortex

Author(s): Takashi Owaki, Michel Vidal-Naquet, Yunjun Nam, Go Uchida, Takayuki Sato, Hideyuki Câteau, Shimon Ullman, Manabu Tanifuji
Published in: PLOS ONE, Issue 13/9, 2018, Page(s) e0201192, ISSN 1932-6203
DOI: 10.1371/journal.pone.0201192

Widespread white matter microstructural abnormalities in bipolar disorder: evidence from mega- and meta-analyses across 3033 individuals

Author(s): Pauline Favre, Melissa Pauling, Jacques Stout, Franz Hozer, Samuel Sarrazin, Christoph Abé, Martin Alda, Clara Alloza, Silvia Alonso-Lana, Ole A. Andreassen, Bernhard T. Baune, Francesco Benedetti, Geraldo F. Busatto, Erick J. Canales-Rodríguez, Xavier Caseras, Tiffany Moukbel Chaim-Avancini, Christopher R. K. Ching, Udo Dannlowski, Michael Deppe, Lisa T. Eyler, Mar Fatjo-Vilas, Sonya F. Foley,
Published in: Neuropsychopharmacology, Issue 44/13, 2019, Page(s) 2285-2293, ISSN 0893-133X
DOI: 10.1038/s41386-019-0485-6

Receptor density pattern confirms and enhances the anatomic-functional features of the macaque superior parietal lobule areas

Author(s): Daniele Impieri, Karl Zilles, Meiqi Niu, Lucija Rapan, Nicole Schubert, Claudio Galletti, Nicola Palomero-Gallagher
Published in: Brain Structure and Function, Issue 224/8, 2019, Page(s) 2733-2756, ISSN 1863-2653
DOI: 10.1007/s00429-019-01930-9

The Role of Top-Down Modulation in Shaping Sensory Processing Across Brain States: Implications for Consciousness

Author(s): Tom Sikkens, Conrado A. Bosman, Umberto Olcese
Published in: Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
DOI: 10.3389/fnsys.2019.00031

The role of the optic tectum for visually evoked orienting and evasive movements

Author(s): Daichi G. Suzuki, Juan Pérez-Fernández, Tobias Wibble, Andreas A. Kardamakis, Sten Grillner
Published in: Proceedings of the National Academy of Sciences, Issue 116/30, 2019, Page(s) 15272-15281, ISSN 0027-8424
DOI: 10.1073/pnas.1907962116

KBbox: A Toolbox of Computational Methods for Studying the Kinetics of Molecular Binding

Author(s): Neil J. Bruce, Gaurav K. Ganotra, Stefan Richter, Rebecca C. Wade
Published in: Journal of Chemical Information and Modeling, Issue 59/9, 2019, Page(s) 3630-3634, ISSN 1549-9596
DOI: 10.1021/acs.jcim.9b00485

Somatotopic mapping of the human breast using 7 T functional MRI

Author(s): Jop Beugels, Job van den Hurk, Judith C. Peters, Esther M. Heuts, Stefania M.H. Tuinder, Rainer Goebel, René R.W.J. van der Hulst
Published in: NeuroImage, Issue 204, 2020, Page(s) 116201, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.116201

Neuromorphic Hardware Learns to Learn

Author(s): Thomas Bohnstingl, Franz Scherr, Christian Pehle, Karlheinz Meier, Wolfgang Maass
Published in: Frontiers in Neuroscience, Issue 13, 2019, ISSN 1662-453X
DOI: 10.3389/fnins.2019.00483

The neglected medial part of macaque area PE: segregated processing of reach depth and direction

Author(s): Marina De Vitis, Rossella Breveglieri, Konstantinos Hadjidimitrakis, Wim Vanduffel, Claudio Galletti, Patrizia Fattori
Published in: Brain Structure and Function, Issue 224/7, 2019, Page(s) 2537-2557, ISSN 1863-2653
DOI: 10.1007/s00429-019-01923-8

Task-dependent functional organizations of the visual ventral stream

Author(s): Han-Gue Jo, Junji Ito, Barbara Schulte Holthausen, Conrad Baumann, Sonja Grün, Ute Habel, Thilo Kellermann
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-45707-w

Indicators and Criteria of Consciousness in Animals and Intelligent Machines: An Inside-Out Approach

Author(s): Cyriel M. A. Pennartz, Michele Farisco, Kathinka Evers
Published in: Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
DOI: 10.3389/fnsys.2019.00025

3D Electron Microscopy Study of Synaptic Organization of the Normal Human Transentorhinal Cortex and Its Possible Alterations in Alzheimer’s Disease

Author(s): Domínguez-Álvaro M, Montero-Crespo M, Blazquez-Llorca L, DeFelipe J, Alonso-Nanclares L
Published in: eNeuro, 2019, ISSN 2373-2822
DOI: 10.1523/eneuro

Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections

Author(s): Elena Pastorelli, Cristiano Capone, Francesco Simula, Maria V. Sanchez-Vives, Paolo Del Giudice, Maurizio Mattia, Pier Stanislao Paolucci
Published in: Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
DOI: 10.3389/fnsys.2019.00033

Group I mGluR-Mediated Activation of Martinotti Cells Inhibits Local Cortical Circuitry in Human Cortex

Author(s): Tim Kroon, Julia Dawitz, Ioannis Kramvis, Jasper Anink, Joshua Obermayer, Matthijs B. Verhoog, René Wilbers, Natalia A. Goriounova, Sander Idema, Johannes C. Baayen, Eleonora Aronica, Huibert D. Mansvelder, Rhiannon M. Meredith
Published in: Frontiers in Cellular Neuroscience, Issue 13, 2019, ISSN 1662-5102
DOI: 10.3389/fncel.2019.00315

Bilingualism and “brain reserve”: a matter of age

Author(s): Stefan Heim, Johanna Stumme, Nora Bittner, Christiane Jockwitz, Katrin Amunts, Svenja Caspers
Published in: Neurobiology of Aging, Issue 81, 2019, Page(s) 157-165, ISSN 0197-4580
DOI: 10.1016/j.neurobiolaging.2019.05.021

The need for a conceptual expansion of neuroethics

Author(s): Salles A., Evers K., Farisco M.
Published in: AJOB Neuroscience, 2019, ISSN 2150-7759
DOI: 10.1080/21507740.1632972

The hidden repertoire of brain dynamics and dysfunction

Author(s): Anthony R. McIntosh, Viktor K. Jirsa
Published in: Network Neuroscience, Issue 3/4, 2019, Page(s) 994-1008, ISSN 2472-1751
DOI: 10.1162/netn_a_00107

An algorithm for learning shape and appearance models without annotations

Author(s): John Ashburner, Mikael Brudfors, Kevin Bronik, Yaël Balbastre
Published in: Medical Image Analysis, Issue 55, 2019, Page(s) 197-215, ISSN 1361-8415
DOI: 10.1016/j.media.2019.04.008

odMLtables: A User-Friendly Approach for Managing Metadata of Neurophysiological Experiments

Author(s): Julia Sprenger, Lyuba Zehl, Jana Pick, Michael Sonntag, Jan Grewe, Thomas Wachtler, Sonja Grün, Michael Denker
Published in: Frontiers in Neuroinformatics, Issue 13, 2019, ISSN 1662-5196
DOI: 10.3389/fninf.2019.00062

Investigating targets for neuropharmacological intervention by molecular dynamics simulations

Author(s): Giulia Rossetti, Achim Kless, Luhua Lai, Tiago F. Outeiro, Paolo Carloni
Published in: Biochemical Society Transactions, Issue 47/3, 2019, Page(s) 909-918, ISSN 0300-5127
DOI: 10.1042/bst20190048

A kinetic model for Brain-Derived Neurotrophic Factor mediated spike timing-dependent LTP

Author(s): Sergio M. G. Solinas, Elke Edelmann, Volkmar Leßmann, Michele Migliore
Published in: PLOS Computational Biology, Issue 15/4, 2019, Page(s) e1006975, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006975

Grand Unified Theories of the Brain Need Better Understanding of Behavior: The Two-Tiered Emergence of Function

Author(s): Viktor K. Jirsa, Anthony R. McIntosh, Raoul Huys
Published in: Ecological Psychology, Issue 31/3, 2019, Page(s) 152-165, ISSN 1040-7413
DOI: 10.1080/10407413.2019.1615207

Reconstruction and Simulation of a Scaffold Model of the Cerebellar Network

Author(s): Stefano Casali, Elisa Marenzi, Chaitanya Medini, Claudia Casellato, Egidio D'Angelo
Published in: Frontiers in Neuroinformatics, Issue 13, 2019, ISSN 1662-5196
DOI: 10.3389/fninf.2019.00037

Optogenetics in Brain Research: From a Strategy to Investigate Physiological Function to a Therapeutic Tool

Author(s): Elena Montagni, Francesco Resta, Anna Letizia Allegra Mascaro, Francesco Saverio Pavone
Published in: Photonics, Issue 6/3, 2019, Page(s) 92, ISSN 2304-6732
DOI: 10.3390/photonics6030092

FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain

Author(s): Jan André Reuter, Felix Matuschke, Miriam Menzel, Nicole Schubert, Kévin Ginsburger, Cyril Poupon, Katrin Amunts, Markus Axer
Published in: International Journal of Computer Assisted Radiology and Surgery, Issue 14/11, 2019, Page(s) 1881-1889, ISSN 1861-6410
DOI: 10.1007/s11548-019-02053-6

Discrimination of the hierarchical structure of cortical layers in 2-photon microscopy data by combined unsupervised and supervised machine learning

Author(s): Dong Li, Melissa Zavaglia, Guangyu Wang, Hong Xie, Yi Hu, Rene Werner, Ji-Song Guan, Claus C. Hilgetag
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-43432-y

The subthreshold-active KV7 current regulates neurotransmission by limiting spike-induced Ca2+ influx in hippocampal mossy fiber synaptic terminals

Author(s): Katiuscia Martinello, Elisabetta Giacalone, Michele Migliore, David A. Brown, Mala M. Shah
Published in: Communications Biology, Issue 2/1, 2019, ISSN 2399-3642
DOI: 10.1038/s42003-019-0408-4

Network analysis of whole-brain fMRI dynamics: A new framework based on dynamic communicability

Author(s): Matthieu Gilson, Nikos E. Kouvaris, Gustavo Deco, Jean-François Mangin, Cyril Poupon, Sandrine Lefranc, Denis Rivière, Gorka Zamora-López
Published in: NeuroImage, Issue 201, 2019, Page(s) 116007, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.116007

Alteration of the Cortex Shape as a Proxy of White Matter Swelling in Severe Cerebral Small Vessel Disease

Author(s): François De Guio, David Germanaud, Julien Lefèvre, Clara Fischer, Jean-François Mangin, Hugues Chabriat, Eric Jouvent
Published in: Frontiers in Neurology, Issue 10, 2019, ISSN 1664-2295
DOI: 10.3389/fneur.2019.00753

Sleep-like slow oscillations improve visual classification through synaptic homeostasis and memory association in a thalamo-cortical model

Author(s): Cristiano Capone, Elena Pastorelli, Bruno Golosio, Pier Stanislao Paolucci
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-45525-0

The Scientific Case for Brain Simulations

Author(s): Gaute T. Einevoll, Alain Destexhe, Markus Diesmann, Sonja Grün, Viktor Jirsa, Marc de Kamps, Michele Migliore, Torbjørn V. Ness, Hans E. Plesser, Felix Schürmann
Published in: Neuron, Issue 102/4, 2019, Page(s) 735-744, ISSN 0896-6273
DOI: 10.1016/j.neuron.2019.03.027

Towards a Unified View on Pathways and Functions of Neural Recurrent Processing

Author(s): Cyriel M.A. Pennartz, Shirin Dora, Lars Muckli, Jeannette A.M. Lorteije
Published in: Trends in Neurosciences, Issue 42/9, 2019, Page(s) 589-603, ISSN 0166-2236
DOI: 10.1016/j.tins.2019.07.005

Brainstem nucleus incertus controls contextual memory formation

Author(s): András Szőnyi, Katalin E. Sos, Rita Nyilas, Dániel Schlingloff, Andor Domonkos, Virág T. Takács, Balázs Pósfai, Panna Hegedüs, James B. Priestley, Andrew L. Gundlach, Attila I. Gulyás, Viktor Varga, Attila Losonczy, Tamás F. Freund, Gábor Nyiri
Published in: Science, Issue 364/6442, 2019, Page(s) eaaw0445, ISSN 0036-8075
DOI: 10.1126/science.aaw0445

Optimization of surgical intervention outside the epileptogenic zone in the Virtual Epileptic Patient (VEP)

Author(s): Sora An, Fabrice Bartolomei, Maxime Guye, Viktor Jirsa
Published in: PLOS Computational Biology, Issue 15/6, 2019, Page(s) e1007051, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1007051

Sex Classification by Resting State Brain Connectivity

Author(s): Susanne Weis, Kaustubh R Patil, Felix Hoffstaedter, Alessandra Nostro, B T Thomas Yeo, Simon B Eickhoff
Published in: Cerebral Cortex, 2019, ISSN 1047-3211
DOI: 10.1093/cercor/bhz129

An architectonic type principle integrates macroscopic cortico-cortical connections with intrinsic cortical circuits of the primate brain

Author(s): Claus C. Hilgetag, Sarah F. Beul, Sacha J. van Albada, Alexandros Goulas
Published in: Network Neuroscience, Issue 3/4, 2019, Page(s) 905-923, ISSN 2472-1751
DOI: 10.1162/netn_a_00100

Differential Structure of Hippocampal CA1 Pyramidal Neurons in the Human and Mouse

Author(s): Ruth Benavides-Piccione, Mamen Regalado-Reyes, Isabel Fernaud-Espinosa, Asta Kastanauskaite, Silvia Tapia-González, Gonzalo León-Espinosa, Concepcion Rojo, Ricardo Insausti, Idan Segev, Javier DeFelipe
Published in: Cerebral Cortex, 2019, ISSN 1047-3211
DOI: 10.1093/cercor/bhz122

Ventral midbrain stimulation induces perceptual learning and cortical plasticity in primates

Author(s): John T. Arsenault, Wim Vanduffel
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
DOI: 10.1038/s41467-019-11527-9

Second type of criticality in the brain uncovers rich multiple-neuron dynamics

Author(s): David Dahmen, Sonja Grün, Markus Diesmann, Moritz Helias
Published in: Proceedings of the National Academy of Sciences, Issue 116/26, 2019, Page(s) 13051-13060, ISSN 0027-8424
DOI: 10.1073/pnas.1818972116

Awakening: Predicting external stimulation to force transitions between different brain states

Author(s): Gustavo Deco, Josephine Cruzat, Joana Cabral, Enzo Tagliazucchi, Helmut Laufs, Nikos K. Logothetis, Morten L. Kringelbach
Published in: Proceedings of the National Academy of Sciences, Issue 116/36, 2019, Page(s) 18088-18097, ISSN 0027-8424
DOI: 10.1073/pnas.1905534116

Effects of synaptic and myelin plasticity on learning in a network of Kuramoto phase oscillators

Author(s): M. Karimian, D. Dibenedetto, M. Moerel, T. Burwick, R. L. Westra, P. De Weerd, M. Senden
Published in: Chaos: An Interdisciplinary Journal of Nonlinear Science, Issue 29/8, 2019, Page(s) 083122, ISSN 1054-1500
DOI: 10.1063/1.5092786

Intersectional observations of the Human Brain Project’s approach to sex and gender

Author(s): B. Tyr Fothergill, William Knight, Bernd Carsten Stahl, Inga Ulnicane
Published in: Journal of Information, Communication and Ethics in Society, Issue 17/2, 2019, Page(s) 128-144, ISSN 1477-996X
DOI: 10.1108/jices-11-2018-0091

Modulation of the spontaneous hemodynamic response function across levels of consciousness

Author(s): Guo-Rong Wu, Carol Di Perri, Vanessa Charland-Verville, Charlotte Martial, Manon Carrière, Audrey Vanhaudenhuyse, Steven Laureys, Daniele Marinazzo
Published in: NeuroImage, Issue 200, 2019, Page(s) 450-459, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.07.011

Common and distinct neural correlates of dual-tasking and task-switching: a meta-analytic review and a neuro-cognitive processing model of human multitasking

Author(s): Britta Worringer, Robert Langner, Iring Koch, Simon B. Eickhoff, Claudia R. Eickhoff, Ferdinand C. Binkofski
Published in: Brain Structure and Function, Issue 224/5, 2019, Page(s) 1845-1869, ISSN 1863-2653
DOI: 10.1007/s00429-019-01870-4

The Human Brain Project—Synergy between neuroscience, computing, informatics, and brain-inspired technologies

Author(s): Katrin Amunts, Alois C. Knoll, Thomas Lippert, Cyriel M. A. Pennartz, Philippe Ryvlin, Alain Destexhe, Viktor K. Jirsa, Egidio D’Angelo, Jan G. Bjaalie
Published in: PLOS Biology, Issue 17/7, 2019, Page(s) e3000344, ISSN 1545-7885
DOI: 10.1371/journal.pbio.3000344

Biologically plausible deep learning — But how far can we go with shallow networks?

Author(s): Bernd Illing, Wulfram Gerstner, Johanni Brea
Published in: Neural Networks, Issue 118, 2019, Page(s) 90-101, ISSN 0893-6080
DOI: 10.1016/j.neunet.2019.06.001

iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology

Author(s): Christopher Holdgraf, Stefan Appelhoff, Stephan Bickel, Kristofer Bouchard, Sasha D’Ambrosio, Olivier David, Orrin Devinsky, Benjamin Dichter, Adeen Flinker, Brett L. Foster, Krzysztof J. Gorgolewski, Iris Groen, David Groppe, Aysegul Gunduz, Liberty Hamilton, Christopher J. Honey, Mainak Jas, Robert Knight, Jean-Philippe Lachaux, Jonathan C. Lau, Christopher Lee-Messer, Brian N. Lundstrom, Kai
Published in: Scientific Data, Issue 6/1, 2019, ISSN 2052-4463
DOI: 10.1038/s41597-019-0105-7

Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging

Author(s): Kirsten K. Osen, Jala Imad, Arvind E. Wennberg, Eszter A. Papp, Trygve B. Leergaard
Published in: NeuroImage, Issue 199, 2019, Page(s) 38-56, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.05.016

Biophysical Psychiatry—How Computational Neuroscience Can Help to Understand the Complex Mechanisms of Mental Disorders

Author(s): Tuomo Mäki-Marttunen, Tobias Kaufmann, Torbjørn Elvsåshagen, Anna Devor, Srdjan Djurovic, Lars T. Westlye, Marja-Leena Linne, Marcella Rietschel, Dirk Schubert, Stefan Borgwardt, Magdalena Efrim-Budisteanu, Francesco Bettella, Geir Halnes, Espen Hagen, Solveig Næss, Torbjørn V. Ness, Torgeir Moberget, Christoph Metzner, Andrew G. Edwards, Marianne Fyhn, Anders M. Dale, Gaute T. Einevoll, Ole
Published in: Frontiers in Psychiatry, Issue 10, 2019, ISSN 1664-0640
DOI: 10.3389/fpsyt.2019.00534

Differential neural dynamics underling pragmatic and semantic affordance processing in macaque ventral premotor cortex

Author(s): Monica Maranesi, Stefania Bruni, Alessandro Livi, Francesco Donnarumma, Giovanni Pezzulo, Luca Bonini
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-48216-y

Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits

Author(s): Padraig Gleeson, Matteo Cantarelli, Boris Marin, Adrian Quintana, Matt Earnshaw, Sadra Sadeh, Eugenio Piasini, Justas Birgiolas, Robert C. Cannon, N. Alex Cayco-Gajic, Sharon Crook, Andrew P. Davison, Salvador Dura-Bernal, András Ecker, Michael L. Hines, Giovanni Idili, Frederic Lanore, Stephen D. Larson, William W. Lytton, Amitava Majumdar, Robert A. McDougal, Subhashini Sivagnanam, Sergio Solin
Published in: Neuron, Issue 103/3, 2019, Page(s) 395-411.e5, ISSN 0896-6273
DOI: 10.1016/j.neuron.2019.05.019

An unsupervised neuromorphic clustering algorithm

Author(s): Alan Diamond, Michael Schmuker, Thomas Nowotny
Published in: Biological Cybernetics, Issue 113/4, 2019, Page(s) 423-437, ISSN 0340-1200
DOI: 10.1007/s00422-019-00797-7

Combined Rehabilitation Promotes the Recovery of Structural and Functional Features of Healthy Neuronal Networks after Stroke

Author(s): Anna Letizia Allegra Mascaro, Emilia Conti, Stefano Lai, Antonino Paolo Di Giovanna, Cristina Spalletti, Claudia Alia, Alessandro Panarese, Alessandro Scaglione, Leonardo Sacconi, Silvestro Micera, Matteo Caleo, Francesco Saverio Pavone
Published in: Cell Reports, Issue 28/13, 2019, Page(s) 3474-3485.e6, ISSN 2211-1247
DOI: 10.1016/j.celrep.2019.08.062

Caching mechanisms for habit formation in Active Inference

Author(s): D. Maisto, K. Friston, G. Pezzulo
Published in: Neurocomputing, Issue 359, 2019, Page(s) 298-314, ISSN 0925-2312
DOI: 10.1016/j.neucom.2019.05.083

Evaluation of Spike Sorting Algorithms: Application to Human Subthalamic Nucleus Recordings and Simulations

Author(s): Jeyathevy Sukiban, Nicole Voges, Till A. Dembek, Robin Pauli, Veerle Visser-Vandewalle, Michael Denker, Immo Weber, Lars Timmermann, Sonja Grün
Published in: Neuroscience, Issue 414, 2019, Page(s) 168-185, ISSN 0306-4522
DOI: 10.1016/j.neuroscience.2019.07.005

Suppressive Traveling Waves Shape Representations of Illusory Motion in Primary Visual Cortex of Awake Primate

Author(s): Sandrine Chemla, Alexandre Reynaud, Matteo di Volo, Yann Zerlaut, Laurent Perrinet, Alain Destexhe, Frédéric Chavane
Published in: The Journal of Neuroscience, Issue 39/22, 2019, Page(s) 4282-4298, ISSN 0270-6474
DOI: 10.1523/jneurosci.2792-18.2019

Machine Learning Analysis of τRAMD Trajectories to Decipher Molecular Determinants of Drug-Target Residence Times

Author(s): Daria B. Kokh, Tom Kaufmann, Bastian Kister, Rebecca C. Wade
Published in: Frontiers in Molecular Biosciences, Issue 6, 2019, ISSN 2296-889X
DOI: 10.3389/fmolb.2019.00036

Correlation Transfer by Layer 5 Cortical Neurons Under Recreated Synaptic Inputs In Vitro

Author(s): Daniele Linaro, Gabriel K. Ocker, Brent Doiron, Michele Giugliano
Published in: The Journal of Neuroscience, Issue 39/39, 2019, Page(s) 7648-7663, ISSN 0270-6474
DOI: 10.1523/jneurosci.3169-18.2019

Learning tractable Bayesian networks in the space of elimination orders

Author(s): Marco Benjumeda, Concha Bielza, Pedro Larrañaga
Published in: Artificial Intelligence, Issue 274, 2019, Page(s) 66-90, ISSN 0004-3702
DOI: 10.1016/j.artint.2018.11.007

Pathway-Specific Genetic Risk for Alzheimer’s Disease Differentiates Regional Patterns of Cortical Atrophy in Older Adults

Author(s): Svenja Caspers, Melanie E Röckner, Christiane Jockwitz, Nora Bittner, Alexander Teumer, Stefan Herms, Per Hoffmann, Markus M Nöthen, Susanne Moebus, Katrin Amunts, Sven Cichon, Thomas W Mühleisen
Published in: Cerebral Cortex, 2019, ISSN 1047-3211
DOI: 10.1093/cercor/bhz127

A Self-Aware Epilepsy Monitoring System for Real-Time Epileptic Seizure Detection

Author(s): Farnaz Forooghifar, Amir Aminifar, Leila Cammoun, Ilona Wisniewski, Carolina Ciumas, Philippe Ryvlin, David Atienza
Published in: Mobile Networks and Applications, 2019, ISSN 1383-469X
DOI: 10.1007/s11036-019-01322-7

General Anesthesia: A Probe to Explore Consciousness

Author(s): Vincent Bonhomme, Cécile Staquet, Javier Montupil, Aline Defresne, Murielle Kirsch, Charlotte Martial, Audrey Vanhaudenhuyse, Camille Chatelle, Stephen Karl Larroque, Federico Raimondo, Athena Demertzi, Olivier Bodart, Steven Laureys, Olivia Gosseries
Published in: Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
DOI: 10.3389/fnsys.2019.00036

Tractable learning of Bayesian networks from partially observed data

Author(s): Marco Benjumeda, Sergio Luengo-Sanchez, Pedro Larrañaga, Concha Bielza
Published in: Pattern Recognition, Issue 91, 2019, Page(s) 190-199, ISSN 0031-3203
DOI: 10.1016/j.patcog.2019.02.025

Electrophysiological monitoring of inhibition in mammalian species, from rodents to humans

Author(s): Adrien Peyrache, Alain Destexhe
Published in: Neurobiology of Disease, Issue 130, 2019, Page(s) 104500, ISSN 0969-9961
DOI: 10.1016/j.nbd.2019.104500

Long time behavior of a mean-field model of interacting neurons

Author(s): Quentin Cormier, Etienne Tanré, Romain Veltz
Published in: Stochastic Processes and their Applications, 2019, ISSN 0304-4149
DOI: 10.1016/j.spa.2019.07.010

3d-SPADE: Significance evaluation of spatio-temporal patterns of various temporal extents

Author(s): Alessandra Stella, Pietro Quaglio, Emiliano Torre, Sonja Grün
Published in: Biosystems, Issue 185, 2019, Page(s) 104022, ISSN 0303-2647
DOI: 10.1016/j.biosystems.2019.104022

CoreNEURON : An Optimized Compute Engine for the NEURON Simulator

Author(s): Pramod Kumbhar, Michael Hines, Jeremy Fouriaux, Aleksandr Ovcharenko, James King, Fabien Delalondre, Felix Schürmann
Published in: Frontiers in Neuroinformatics, Issue 13, 2019, ISSN 1662-5196
DOI: 10.3389/fninf.2019.00063

Navigating with grid and place cells in cluttered environments


Published in: ISSN 1050-9631
DOI: 10.1002/hipo.23147

Complex Electroresponsive Dynamics in Olivocerebellar Neurons Represented With Extended-Generalized Leaky Integrate and Fire Models

Author(s): Alice Geminiani, Claudia Casellato, Egidio D’Angelo, Alessandra Pedrocchi
Published in: Frontiers in Computational Neuroscience, Issue 13, 2019, ISSN 1662-5188
DOI: 10.3389/fncom.2019.00035

Decreased integration of EEG source-space networks in disorders of consciousness

Author(s): Jennifer Rizkallah, Jitka Annen, Julien Modolo, Olivia Gosseries, Pascal Benquet, Sepehr Mortaheb, Hassan Amoud, Helena Cassol, Ahmad Mheich, Aurore Thibaut, Camille Chatelle, Mahmoud Hassan, Rajanikant Panda, Fabrice Wendling, Steven Laureys
Published in: NeuroImage: Clinical, Issue 23, 2019, Page(s) 101841, ISSN 2213-1582
DOI: 10.1016/j.nicl.2019.101841

A Closed-Loop Toolchain for Neural Network Simulations of Learning Autonomous Agents

Author(s): Jakob Jordan, Philipp Weidel, Abigail Morrison
Published in: Frontiers in Computational Neuroscience, Issue 13, 2019, ISSN 1662-5188
DOI: 10.3389/fncom.2019.00046

Tracking the Time Course of Bayesian Inference With Event-Related Potentials:A Study Using the Central Cue Posner Paradigm

Author(s): Carlos M. Gómez, Antonio Arjona, Francesco Donnarumma, Domenico Maisto, Elena I. Rodríguez-Martínez, Giovanni Pezzulo
Published in: Frontiers in Psychology, Issue 10, 2019, ISSN 1664-1078
DOI: 10.3389/fpsyg.2019.01424

Increased and Decreased Superficial White Matter Structural Connectivity in Schizophrenia and Bipolar Disorder

Author(s): Ellen Ji, Pamela Guevara, Miguel Guevara, Antoine Grigis, Nicole Labra, Samuel Sarrazin, Nora Hamdani, Frank Bellivier, Marine Delavest, Marion Leboyer, Ryad Tamouza, Cyril Poupon, Jean-François Mangin, Josselin Houenou
Published in: Schizophrenia Bulletin, Issue 45/6, 2019, Page(s) 1367-1378, ISSN 0586-7614
DOI: 10.1093/schbul/sbz015

Geometry in active learning for binary and multi-class image segmentation

Author(s): Ksenia Konyushkova, Raphael Sznitman, Pascal Fua
Published in: Computer Vision and Image Understanding, Issue 182, 2019, Page(s) 1-16, ISSN 1077-3142
DOI: 10.1016/j.cviu.2019.01.007

Transmission time delays organize the brain network synchronization

Author(s): Spase Petkoski, Viktor K. Jirsa
Published in: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Issue 377/2153, 2019, Page(s) 20180132, ISSN 1364-503X
DOI: 10.1098/rsta.2018.0132

Responsible Data Governance of Neuroscience Big Data

Author(s): B. Tyr Fothergill, William Knight, Bernd Carsten Stahl, Inga Ulnicane
Published in: Frontiers in Neuroinformatics, Issue 13, 2019, ISSN 1662-5196
DOI: 10.3389/fninf.2019.00028

Diagnostic accuracy of the CRS-R index in patients with disorders of consciousness


Published in: ISSN 0269-9052
DOI: 10.1080/02699052.2019.1644376

Detection and evaluation of bursts in terms of novelty and surprise

Author(s): Junji Ito, Emanuele Lucrezia, Günther Palm, Sonja Grün
Published in: Mathematical Biosciences and Engineering, Issue 16/6, 2019, Page(s) 6990-7008, ISSN 1551-0018
DOI: 10.3934/mbe.2019351

Resting-state functional connectivity and cortical thickness characterization of a patient with Charles Bonnet syndrome

Author(s): Charlotte Martial, Stephen Karl Larroque, Carlo Cavaliere, Sarah Wannez, Jitka Annen, Ron Kupers, Steven Laureys, Carol Di Perri
Published in: PLOS ONE, Issue 14/7, 2019, Page(s) e0219656, ISSN 1932-6203
DOI: 10.1371/journal.pone.0219656

Stability of working memory in continuous attractor networks under the control of short-term plasticity

Author(s): Alexander Seeholzer, Moritz Deger, Wulfram Gerstner
Published in: PLOS Computational Biology, Issue 15/4, 2019, Page(s) e1006928, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006928

Evaluating Approximations and Heuristic Measures of Integrated Information

Author(s): André Sevenius Nilsen, Bjørn Erik Juel, William Marshall
Published in: Entropy, Issue 21/5, 2019, Page(s) 525, ISSN 1099-4300
DOI: 10.3390/e21050525

Single tDCS session of motor cortex in patients with disorders of consciousness: a pilot study


Published in: ISSN 0269-9052
DOI: 10.1080/02699052.2019.1667537

Unique Features of Network Bursts Emerge From the Complex Interplay of Excitatory and Inhibitory Receptors in Rat Neocortical Networks

Author(s): Heidi Teppola, Jugoslava Aćimović, Marja-Leena Linne
Published in: Frontiers in Cellular Neuroscience, Issue 13, 2019, ISSN 1662-5102
DOI: 10.3389/fncel.2019.00377

A Derived Positional Mapping of Inhibitory Subtypes in the Somatosensory Cortex

Author(s): Daniel Keller, Julie Meystre, Rahul V. Veettil, Olivier Burri, Romain Guiet, Felix Schürmann, Henry Markram
Published in: Frontiers in Neuroanatomy, Issue 13, 2019, ISSN 1662-5129
DOI: 10.3389/fnana.2019.00078

Measures of CNS-Autonomic Interaction and Responsiveness in Disorder of Consciousness

Author(s): Francesco Riganello, Stephen Karl Larroque, Carol Di Perri, Valeria Prada, Walter G. Sannita, Steven Laureys
Published in: Frontiers in Neuroscience, Issue 13, 2019, ISSN 1662-453X
DOI: 10.3389/fnins.2019.00530

Altered Neocortical Dynamics in a Mouse Model of Williams–Beuren Syndrome

Author(s): Miguel Dasilva, Alvaro Navarro-Guzman, Paula Ortiz-Romero, Alessandra Camassa, Alberto Muñoz-Cespedes, Victoria Campuzano, Maria V. Sanchez-Vives
Published in: Molecular Neurobiology, Issue 57/2, 2020, Page(s) 765-777, ISSN 0893-7648
DOI: 10.1007/s12035-019-01732-4

Single-Cell and Neuronal Network Alterations in an In Vitro Model of Fragile X Syndrome

Author(s): Anastasiya Moskalyuk, Sebastiaan Van De Vijver, Peter Verstraelen, Winnok H De Vos, R Frank Kooy, Michele Giugliano
Published in: Cerebral Cortex, Issue 30/1, 2019, Page(s) 31-46, ISSN 1047-3211
DOI: 10.1093/cercor/bhz068

Frequency- and State-Dependent Network Effects of Electrical Stimulation Targeting the Ventral Tegmental Area in Macaques

Author(s): Sjoerd R Murris, John T Arsenault, Wim Vanduffel
Published in: Cerebral Cortex, 2020, ISSN 1047-3211
DOI: 10.1093/cercor/bhaa007

Current Principles of Motor Control, with Special Reference to Vertebrate Locomotion

Author(s): Sten Grillner, Abdeljabbar El Manira
Published in: Physiological Reviews, Issue 100/1, 2020, Page(s) 271-320, ISSN 0031-9333
DOI: 10.1152/physrev.00015.2019

The Segmentation of Proto-Objects in the Monkey Primary Visual Cortex

Author(s): Matthew W. Self, Danique Jeurissen, Anne F. van Ham, Bram van Vugt, Jasper Poort, Pieter R. Roelfsema
Published in: Current Biology, Issue 29/6, 2019, Page(s) 1019-1029.e4, ISSN 0960-9822
DOI: 10.1016/j.cub.2019.02.016

Multimodal mapping and analysis of the cyto- and receptorarchitecture of the human hippocampus

Author(s): Nicola Palomero-Gallagher, Olga Kedo, Hartmut Mohlberg, Karl Zilles, Katrin Amunts
Published in: Brain Structure and Function, Issue 225/3, 2020, Page(s) 881-907, ISSN 1863-2653
DOI: 10.1007/s00429-019-02022-4

Crowding reveals fundamental differences in local vs. global processing in humans and machines

Author(s): A. Doerig, A. Bornet, O.H. Choung, M.H. Herzog
Published in: Vision Research, Issue 167, 2020, Page(s) 39-45, ISSN 0042-6989
DOI: 10.1016/j.visres.2019.12.006

State-dependent mean-field formalism to model different activity states in conductance-based networks of spiking neurons

Author(s): Cristiano Capone, Matteo di Volo, Alberto Romagnoni, Maurizio Mattia, Alain Destexhe
Published in: Physical Review E, Issue 100/6, 2019, ISSN 2470-0045
DOI: 10.1103/physreve.100.062413

The genetic architecture of the human cerebral cortex

Author(s): Katrina L. Grasby, Neda Jahanshad, Jodie N. Painter, Lucía Colodro-Conde, Janita Bralten, Derrek P. Hibar, Penelope A. Lind, Fabrizio Pizzagalli, Christopher R. K. Ching, Mary Agnes B. McMahon, Natalia Shatokhina, Leo C. P. Zsembik, Sophia I. Thomopoulos, Alyssa H. Zhu, Lachlan T. Strike, Ingrid Agartz, Saud Alhusaini, Marcio A. A. Almeida, Dag Alnæs, Inge K. Amlien, Micael Andersson, Tyler Ard,
Published in: Science, Vol. 367, No. 6484, 2020, ISSN 1095-9203
DOI: 10.1126/science.aay6690

‘Hierarchy’ in the organization of brain networks

Author(s): Claus C. Hilgetag, Alexandros Goulas
Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 375/1796, 2020, Page(s) 20190319, ISSN 0962-8436
DOI: 10.1098/rstb.2019.0319

Unifying the essential concepts of biological networks: biological insights and philosophical foundations

Author(s): Daniel Kostić, Claus C. Hilgetag, Marc Tittgemeyer
Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 375/1796, 2020, Page(s) 20190314, ISSN 0962-8436
DOI: 10.1098/rstb.2019.0314

A mean-field approach to the dynamics of networks of complex neurons, from nonlinear Integrate-and-Fire to Hodgkin–Huxley models

Author(s): M. Carlu, O. Chehab, L. Dalla Porta, D. Depannemaecker, C. Héricé, M. Jedynak, E. Köksal Ersöz, P. Muratore, S. Souihel, C. Capone, Y. Zerlaut, A. Destexhe, M. di Volo
Published in: Journal of Neurophysiology, Issue 123/3, 2020, Page(s) 1042-1051, ISSN 0022-3077
DOI: 10.1152/jn.00399.2019

A new computational approach to estimate whole-brain effective connectivity from functional and structural MRI, applied to language development

Author(s): Gerald Hahn, Michael A. Skeide, Dante Mantini, Marco Ganzetti, Alain Destexhe, Angela D. Friederici, Gustavo Deco
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-44909-6

Estimation of neural network model parameters from local field potentials (LFPs)

Author(s): Jan-Eirik W. Skaar, Alexander J. Stasik, Espen Hagen, Torbjørn V. Ness, Gaute T. Einevoll
Published in: PLOS Computational Biology, Issue 16/3, 2020, Page(s) e1007725, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1007725

Action execution and action observation elicit mirror responses with the same temporal profile in human SII

Author(s): Maria Del Vecchio, Fausto Caruana, Ivana Sartori, Veronica Pelliccia, Flavia Maria Zauli, Giorgio Lo Russo, Giacomo Rizzolatti, Pietro Avanzini
Published in: Communications Biology, Issue 3/1, 2020, ISSN 2399-3642
DOI: 10.1038/s42003-020-0793-8

Graph-theoretical derivation of brain structural connectivity

Author(s): G. Giacopelli, M. Migliore, D. Tegolo
Published in: Applied Mathematics and Computation, Issue 377, 2020, Page(s) 125150, ISSN 0096-3003
DOI: 10.1016/j.amc.2020.125150

Advantages and detection of phase coding in the absence of rhythmicity


Published in: ISSN 1050-9631
DOI: 10.1002/hipo.23199

Automatic labeling of cortical sulci using patch- or CNN-based segmentation techniques combined with bottom-up geometric constraints

Author(s): Léonie Borne, Denis Rivière, Martial Mancip, Jean-François Mangin
Published in: Medical Image Analysis, Issue 62, 2020, Page(s) 101651, ISSN 1361-8415
DOI: 10.1016/j.media.2020.101651

Identification of neurobehavioural symptom groups based on shared brain mechanisms

Author(s): Alex Ing, Philipp G. Sämann, Congying Chu, Nicole Tay, Francesca Biondo, Gabriel Robert, Tianye Jia, Thomas Wolfers, Sylvane Desrivières, Tobias Banaschewski, Arun L. W. Bokde, Uli Bromberg, Christian Büchel, Patricia Conrod, Tahmine Fadai, Herta Flor, Vincent Frouin, Hugh Garavan, Philip A. Spechler, Penny Gowland, Yvonne Grimmer, Andreas Heinz, Bernd Ittermann, Viola Kappel, Jean-Luc Martinot
Published in: Nature Human Behaviour, Issue 3/12, 2019, Page(s) 1306-1318, ISSN 2397-3374
DOI: 10.1038/s41562-019-0738-8

Capacity of the covariance perceptron

Author(s): David Dahmen, Matthieu Gilson, Moritz Helias
Published in: Journal of Physics A: Mathematical and Theoretical, 2020, ISSN 1751-8113
DOI: 10.1088/1751-8121/ab82dd

Event-Triggered Sensing for High-Quality and Low-Power Cardiovascular Monitoring Systems


Published in: ISSN 2168-2356
DOI: 10.1109/mdat.2019.2951126

Muscarinic and Nicotinic Modulation of Neocortical Layer 6A Synaptic Microcircuits Is Cooperative and Cell-Specific

Author(s): Danqing Yang, Robert Günter, Guanxiao Qi, Gabriele Radnikow, Dirk Feldmeyer
Published in: Cerebral Cortex, Issue 30/6, 2019, Page(s) 3528-3542, ISSN 1047-3211
DOI: 10.1093/cercor/bhz324

Task-Independent Spiking Central Pattern Generator: A Learning-Based Approach

Author(s): Elie Aljalbout, Florian Walter, Florian Röhrbein, Alois Knoll
Published in: Neural Processing Letters, 2020, ISSN 1370-4621
DOI: 10.1007/s11063-020-10224-9

Functional network reorganization in older adults: Graph-theoretical analyses of age, cognition and sex

Author(s): Johanna Stumme, Christiane Jockwitz, Felix Hoffstaedter, Katrin Amunts, Svenja Caspers
Published in: NeuroImage, Issue 214, 2020, Page(s) 116756, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2020.116756

Consensus paper: Decoding the Contributions of the Cerebellum as a Time Machine. From Neurons to Clinical Applications

Author(s): Martin Bareš, Richard Apps, Laura Avanzino, Assaf Breska, Egidio D’Angelo, Pavel Filip, Marcus Gerwig, Richard B. Ivry, Charlotte L. Lawrenson, Elan D. Louis, Nicholas A. Lusk, Mario Manto, Warren H. Meck, Hiroshi Mitoma, Elijah A. Petter
Published in: The Cerebellum, Issue 18/2, 2019, Page(s) 266-286, ISSN 1473-4222
DOI: 10.1007/s12311-018-0979-5

A Directional-Linear Bayesian Network and Its Application for Clustering and Simulation of Neural Somas

Author(s): Sergio Luengo-Sanchez, Pedro Larranaga, Concha Bielza
Published in: IEEE Access, Issue 7, 2019, Page(s) 69907-69921, ISSN 2169-3536
DOI: 10.1109/access.2019.2918494

Posterior thalamic nucleus axon terminals have different structure and functional impact in the motor and somatosensory vibrissal cortices

Author(s): Diana Casas-Torremocha, César Porrero, Javier Rodriguez-Moreno, María García-Amado, Joachim H. R. Lübke, Ángel Núñez, Francisco Clascá
Published in: Brain Structure and Function, Issue 224/4, 2019, Page(s) 1627-1645, ISSN 1863-2653
DOI: 10.1007/s00429-019-01862-4

Resource-Aware Distributed Epilepsy Monitoring Using Self-Awareness From Edge to Cloud

Author(s): Farnaz Forooghifar, Amir Aminifar, David Atienza
Published in: IEEE Transactions on Biomedical Circuits and Systems, Issue 13/6, 2019, Page(s) 1338-1350, ISSN 1932-4545
DOI: 10.1109/tbcas.2019.2951222

Slow-Wave Activity in the S1HL Cortex Is Contributed by Different Layer-Specific Field Potential Sources during Development

Author(s): Tania Ortuño, Victor J. López-Madrona, Julia Makarova, Silvia Tapia-Gonzalez, Alberto Muñoz, Javier DeFelipe, Oscar Herreras
Published in: The Journal of Neuroscience, Issue 39/45, 2019, Page(s) 8900-8915, ISSN 0270-6474
DOI: 10.1523/jneurosci.1212-19.2019

The Contribution of AMPA and NMDA Receptors to Persistent Firing in the Dorsolateral Prefrontal Cortex in Working Memory

Author(s): Bram van Vugt, Timo van Kerkoerle, Devavrat Vartak, Pieter R. Roelfsema
Published in: The Journal of Neuroscience, Issue 40/12, 2020, Page(s) 2458-2470, ISSN 0270-6474
DOI: 10.1523/jneurosci.2121-19.2020

Simulation, visualization and analysis tools for pattern recognition assessment with spiking neuronal networks

Author(s): Sergio E. Galindo, Pablo Toharia, Óscar D. Robles, Eduardo Ros, Luis Pastor, Jesús A. Garrido
Published in: Neurocomputing, Issue 400, 2020, Page(s) 309-321, ISSN 0925-2312
DOI: 10.1016/j.neucom.2020.02.114

A real-time marker of object-based attention in the human brain. A possible component of a “gate-keeping mechanism” performing late attentional selection in the Ventro-Lateral Prefrontal Cortex

Author(s): M. Perrone-Bertolotti, S. El Bouzaïdi Tiali, J.R. Vidal, M. Petton, A.C. Croize, P. Deman, S. Rheims, L. Minotti, M. Bhattacharjee, M. Baciu, P. Kahane, J.P. Lachaux
Published in: NeuroImage, Issue 210, 2020, Page(s) 116574, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2020.116574

Lateral inhibition by Martinotti interneurons is facilitated by cholinergic inputs in human and mouse neocortex.

Author(s): Obermayer J, Heistek TS, Kerkhofs A, Goriounova NA, Kroon T, Baayen JC, Idema S, Testa-Silva G, Couey JJ, Mansvelder HD.
Published in: Nature Communications, volume 9, Article number: 4101, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-06628-w.

Dendritic action potentials and computation in human layer 2/3 cortical neurons

Author(s): Albert Gidon, Timothy Adam Zolnik, Pawel Fidzinski, Felix Bolduan, Athanasia Papoutsi, Panayiota Poirazi, Martin Holtkamp, Imre Vida, Matthew Evan Larkum
Published in: Science, Issue 367/6473, 2020, Page(s) 83-87, ISSN 0036-8075
DOI: 10.1126/science.aax6239

The Glycine Receptor Allosteric Ligands Library (GRALL)

Author(s): Adrien H Cerdan, Marion Sisquellas, Gilberto Pereira, Diego E Barreto Gomes, Jean-Pierre Changeux, Marco Cecchini
Published in: Bioinformatics, 2020, ISSN 1367-4803
DOI: 10.1093/bioinformatics/btaa170

Unravelling the effect of the E545K mutation on PI3Kα kinase

Author(s): Ioannis Galdadas, Francesco Luigi Gervasio, Zoe Cournia
Published in: Chemical Science, Issue 11/13, 2020, Page(s) 3511-3515, ISSN 2041-6520
DOI: 10.1039/c9sc05903b

Bridging Single Neuron Dynamics to Global Brain States

Author(s): Jennifer S. Goldman, Núria Tort-Colet, Matteo di Volo, Eduarda Susin, Jules Bouté, Melissa Dali, Mallory Carlu, Trang-Anh Nghiem, Tomasz Górski, Alain Destexhe
Published in: Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
DOI: 10.3389/fnsys.2019.00075

Calbindin immunostaining in the CA1 hippocampal pyramidal cell layer of the human and mouse: A comparative study

Author(s): Paula Merino-Serrais, Silvia Tapia-González, Javier DeFelipe
Published in: Journal of Chemical Neuroanatomy, Issue 104, 2020, Page(s) 101745, ISSN 0891-0618
DOI: 10.1016/j.jchemneu.2020.101745

Towards a European health research and innovation cloud (HRIC)

Author(s): F. M. Aarestrup, A. Albeyatti, W. J. Armitage, C. Auffray, L. Augello, R. Balling, N. Benhabiles, G. Bertolini, J. G. Bjaalie, M. Black, N. Blomberg, P. Bogaert, M. Bubak, B. Claerhout, L. Clarke, B. De Meulder, G. D’Errico, A. Di Meglio, N. Forgo, C. Gans-Combe, A. E. Gray, I. Gut, A. Gyllenberg, G. Hemmrich-Stanisak, L. Hjorth, Y. Ioannidis, S. Jarmalaite, A. Kel, F. Kherif, J. O. Korbel, C. L
Published in: Genome Medicine, Issue 12/1, 2020, ISSN 1756-994X
DOI: 10.1186/s13073-020-0713-z

Hierarchical Data-Driven Analysis of Clinical Symptoms Among Patients With Parkinson's Disease

Author(s): Tal Kozlovski, Alexis Mitelpunkt, Avner Thaler, Tanya Gurevich, Avi Orr-Urtreger, Mali Gana-Weisz, Netta Shachar, Tal Galili, Mira Marcus-Kalish, Susan Bressman, Karen Marder, Nir Giladi, Yoav Benjamini, Anat Mirelman
Published in: Frontiers in Neurology, Issue 10, 2019, ISSN 1664-2295
DOI: 10.3389/fneur.2019.00531

Possible Implication of the CA2 Hippocampal Circuit in Social Cognition Deficits Observed in the Neuroligin 3 Knock-Out Mouse, a Non-Syndromic Animal Model of Autism

Author(s): Brijesh Modi, Domenico Pimpinella, Antonio Pazienti, Paola Zacchi, Enrico Cherubini, Marilena Griguoli
Published in: Frontiers in Psychiatry, Issue 10, 2019, ISSN 1664-0640
DOI: 10.3389/fpsyt.2019.00513

Emotion as an emergent phenomenon of the neurocomputational energy regulation mechanism of a cognitive agent in a decision-making task

Author(s): Murat Kirtay, Lorenzo Vannucci, Ugo Albanese, Cecilia Laschi, Erhan Oztop, Egidio Falotico
Published in: Adaptive Behavior, 2019, Page(s) 105971231988064, ISSN 1059-7123
DOI: 10.1177/1059712319880649

Modeling the allosteric modulation on a G-Protein Coupled Receptor: the case of M2 muscarinic Acetylcholine Receptor in complex with LY211960

Author(s): L. Maggi, P. Carloni, G. Rossetti
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
DOI: 10.1038/s41598-020-59289-5

Neurobiological Divergence of the Positive and Negative Schizophrenia Subtypes Identified on a New Factor Structure of Psychopathology Using Non-negative Factorization: An International Machine Learning Study

Author(s): Ji Chen, Kaustubh R. Patil, Susanne Weis, Kang Sim, Thomas Nickl-Jockschat, Juan Zhou, André Aleman, Iris E. Sommer, Edith J. Liemburg, Felix Hoffstaedter, Ute Habel, Birgit Derntl, Xiaojin Liu, Jona M. Fischer, Lydia Kogler, Christina Regenbogen, Vaibhav A. Diwadkar, Jeffrey A. Stanley, Valentin Riedl, Renaud Jardri, Oliver Gruber, Aristeidis Sotiras, Christos Davatzikos, Simon B. Eickhoff, Agna
Published in: Biological Psychiatry, Issue 87/3, 2020, Page(s) 282-293, ISSN 0006-3223
DOI: 10.1016/j.biopsych.2019.08.031

Comparison between diffusion MRI tractography and histological tract-tracing of cortico-cortical structural connectivity in the ferret brain

Author(s): Céline Delettre, Arnaud Messé, Leigh-Anne Dell, Ophélie Foubet, Katja Heuer, Benoit Larrat, Sebastien Meriaux, Jean-Francois Mangin, Isabel Reillo, Camino de Juan Romero, Victor Borrell, Roberto Toro, Claus C. Hilgetag
Published in: Network Neuroscience, Issue 3/4, 2019, Page(s) 1038-1050, ISSN 2472-1751
DOI: 10.1162/netn_a_00098

STDP Forms Associations between Memory Traces in Networks of Spiking Neurons

Author(s): Christoph Pokorny, Matias J Ison, Arjun Rao, Robert Legenstein, Christos Papadimitriou, Wolfgang Maass
Published in: Cerebral Cortex, Issue 30/3, 2019, Page(s) 952-968, ISSN 1047-3211
DOI: 10.1093/cercor/bhz140

The Epileptor Model: A Systematic Mathematical Analysis Linked to the Dynamics of Seizures, Refractory Status Epilepticus, and Depolarization Block

Author(s): Kenza El Houssaini, Christophe Bernard, Viktor K. Jirsa
Published in: eneuro, Issue 7/2, 2020, Page(s) ENEURO.0485-18.2019, ISSN 2373-2822
DOI: 10.1523/eneuro.0485-18.2019

CEREBRUM: a fast and fully-volumetric Convolutional Encoder-decodeR for weakly-supervised sEgmentation of BRain strUctures from out-of-the-scanner MRI

Author(s): Dennis Bontempi, Sergio Benini, Alberto Signoroni, Michele Svanera, Lars Muckli
Published in: Medical Image Analysis, Issue 62, 2020, Page(s) 101688, ISSN 1361-8415
DOI: 10.1016/j.media.2020.101688

Beyond Bouma's window: How to explain global aspects of crowding?

Author(s): Adrien Doerig, Alban Bornet, Ruth Rosenholtz, Gregory Francis, Aaron M. Clarke, Michael H. Herzog
Published in: PLOS Computational Biology, Issue 15/5, 2019, Page(s) e1006580, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006580

Area-Specific Synapse Structure in Branched Posterior Nucleus Axons Reveals a New Level of Complexity in Thalamocortical Networks

Author(s): Javier Rodriguez-Moreno, Cesar Porrero, Astrid Rollenhagen, Mario Rubio-Teves, Diana Casas-Torremocha, Lidia Alonso-Nanclares, Rachida Yakoubi, Andrea Santuy, Angel Merchan-Pérez, Javier DeFelipe, Joachim H.R. Lübke, Francisco Clasca
Published in: The Journal of Neuroscience, Issue 40/13, 2020, Page(s) 2663-2679, ISSN 0270-6474
DOI: 10.1523/jneurosci.2886-19.2020

An integrative methodology based on protein-protein interaction networks for identification and functional annotation of disease-relevant genes applied to channelopathies

Author(s): Milagros Marín, Francisco J. Esteban, Hilario Ramírez-Rodrigo, Eduardo Ros, María José Sáez-Lara
Published in: BMC Bioinformatics, Issue 20/1, 2019, ISSN 1471-2105
DOI: 10.1186/s12859-019-3162-1

Layer 6b Is Driven by Intracortical Long-Range Projection Neurons

Author(s): Timothy A. Zolnik, Julia Ledderose, Maria Toumazou, Thorsten Trimbuch, Tess Oram, Christian Rosenmund, Britta J. Eickholt, Robert N.S. Sachdev, Matthew E. Larkum
Published in: Cell Reports, Issue 30/10, 2020, Page(s) 3492-3505.e5, ISSN 2211-1247
DOI: 10.1016/j.celrep.2020.02.044

Sizing complex networks

Author(s): Gorka Zamora-López, Romain Brasselet
Published in: Communications Physics, Issue 2/1, 2019, ISSN 2399-3650
DOI: 10.1038/s42005-019-0239-0

Diverse Neuron Properties and Complex Network Dynamics in the Cerebellar Cortical Inhibitory Circuit

Author(s): Francesca Prestori, Lisa Mapelli, Egidio D’Angelo
Published in: Frontiers in Molecular Neuroscience, Issue 12, 2019, ISSN 1662-5099
DOI: 10.3389/fnmol.2019.00267

A Cerebellar Internal Models Control Architecture for Online Sensorimotor Adaptation of a Humanoid Robot Acting in a Dynamic Environment

Author(s): Marie Claire Capolei, Nils Axel Andersen, Henrik Hautop Lund, Egidio Falotico, Silvia Tolu
Published in: IEEE Robotics and Automation Letters, Issue 5/1, 2020, Page(s) 80-87, ISSN 2377-3766
DOI: 10.1109/lra.2019.2943818

Running Large-Scale Simulations on the Neurorobotics Platform to Understand Vision – The Case of Visual Crowding

Author(s): Alban Bornet, Jacques Kaiser, Alexander Kroner, Egidio Falotico, Alessandro Ambrosano, Kepa Cantero, Michael H. Herzog, Gregory Francis
Published in: Frontiers in Neurorobotics, Issue 13, 2019, ISSN 1662-5218
DOI: 10.3389/fnbot.2019.00033

VOR Adaptation on a Humanoid iCub Robot Using a Spiking Cerebellar Model

Author(s): Francisco Naveros, Niceto R. Luque, Eduardo Ros, Angelo Arleo
Published in: IEEE Transactions on Cybernetics, 2019, Page(s) 1-14, ISSN 2168-2267
DOI: 10.1109/tcyb.2019.2899246

On Robot Compliance: A Cerebellar Control Approach

Author(s): I. Abadía, F. Naveros, J. A. Garrido, E. Ros, and N. R. Luque
Published in: IEEE Transactions on Cybernetics, 2019, ISSN 2168-2275
DOI: 10.1109/tcyb.2019.2945498.

Cholinergic Switch between Two Types of Slow Waves in Cerebral Cortex

Author(s): Trang-Anh E Nghiem, Núria Tort-Colet, Tomasz Górski, Ulisse Ferrari, Shayan Moghimyfiroozabad, Jennifer S Goldman, Bartosz Teleńczuk, Cristiano Capone, Thierry Bal, Matteo di Volo, Alain Destexhe
Published in: Cerebral Cortex, Issue 30/6, 2020, Page(s) 3451-3466, ISSN 1047-3211
DOI: 10.1093/cercor/bhz320

Disrupted Calcium Signaling in Animal Models of Human Spinocerebellar Ataxia (SCA)

Author(s): Francesca Prestori, Francesco Moccia, Egidio D’Angelo
Published in: International Journal of Molecular Sciences, Issue 21/1, 2020, Page(s) 216, ISSN 1422-0067
DOI: 10.3390/ijms21010216

NeuroQuery, comprehensive meta-analysis of human brain mapping

Author(s): Jérôme Dockès, Russell A Poldrack, Romain Primet, Hande Gözükan, Tal Yarkoni, Fabian Suchanek, Bertrand Thirion, Gaël Varoquaux
Published in: eLife, Issue 9, 2020, ISSN 2050-084X
DOI: 10.7554/elife.53385

Low entropy map of brain oscillatory activity identifies spatially localized events: A new method for automated epilepsy focus prediction

Author(s): Manel Vila-Vidal, Carmen Pérez Enríquez, Alessandro Principe, Rodrigo Rocamora, Gustavo Deco, Adrià Tauste Campo
Published in: NeuroImage, Issue 208, 2020, Page(s) 116410, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.116410

Modeling brain dynamics after tumor resection using The Virtual Brain

Author(s): Hannelore Aerts, Michael Schirner, Thijs Dhollander, Ben Jeurissen, Eric Achten, Dirk Van Roost, Petra Ritter, Daniele Marinazzo
Published in: NeuroImage, Issue 213, 2020, Page(s) 116738, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2020.116738

A Biomimetic Control Method Increases the Adaptability of a Humanoid Robot Acting in a Dynamic Environment

Author(s): Marie Claire Capolei, Emmanouil Angelidis, Egidio Falotico, Henrik Hautop Lund, Silvia Tolu
Published in: Frontiers in Neurorobotics, Issue 13, 2019, ISSN 1662-5218
DOI: 10.3389/fnbot.2019.00070

Individual structural features constrain the mouse functional connectome

Author(s): Francesca Melozzi, Eyal Bergmann, Julie A. Harris, Itamar Kahn, Viktor Jirsa, Christophe Bernard
Published in: Proceedings of the National Academy of Sciences, Issue 116/52, 2019, Page(s) 26961-26969, ISSN 0027-8424
DOI: 10.1073/pnas.1906694116

Large-Scale Neuromorphic Spiking Array Processors: A Quest to Mimic the Brain

Author(s): Chetan Singh Thakur, Jamal Lottier Molin, Gert Cauwenberghs, Giacomo Indiveri, Kundan Kumar, Ning Qiao, Johannes Schemmel, Runchun Wang, Elisabetta Chicca, Jennifer Olson Hasler, Jae-sun Seo, Shimeng Yu, Yu Cao, André van Schaik, Ralph Etienne-Cummings
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00891

Studying the effects of synaptic clustering in silico : when the neighbourhood party gets too loud

Author(s): Szabolcs Káli
Published in: The Journal of Physiology, Issue 596/17, 2018, Page(s) 3829-3830, ISSN 0022-3751
DOI: 10.1113/jp276627

Cytoarchitectonic Characterization and Functional Decoding of Four New Areas in the Human Lateral Orbitofrontal Cortex

Author(s): Magdalena Wojtasik, Sebastian Bludau, Simon B. Eickhoff, Hartmut Mohlberg, Fatma Gerboga, Svenja Caspers, Katrin Amunts
Published in: Frontiers in Neuroanatomy, Issue 14, 2020, ISSN 1662-5129
DOI: 10.3389/fnana.2020.00002

Understanding Ligand Binding Selectivity in a Prototypical GPCR Family

Author(s): Giulio Mattedi, Francesca Deflorian, Jonathan S. Mason, Chris de Graaf, Francesco L. Gervasio
Published in: Journal of Chemical Information and Modeling, Issue 59/6, 2019, Page(s) 2830-2836, ISSN 1549-9596
DOI: 10.1021/acs.jcim.9b00298

Unsuspected Involvement of Spinal Cord in Alzheimer Disease

Author(s): Roberta Maria Lorenzi, Fulvia Palesi, Gloria Castellazzi, Paolo Vitali, Nicoletta Anzalone, Sara Bernini, Matteo Cotta Ramusino, Elena Sinforiani, Giuseppe Micieli, Alfredo Costa, Egidio D’Angelo, Claudia A. M. Gandini Wheeler-Kingshott
Published in: Frontiers in Cellular Neuroscience, Issue 14, 2020, ISSN 1662-5102
DOI: 10.3389/fncel.2020.00006

Embodied Synaptic Plasticity With Online Reinforcement Learning

Author(s): Jacques Kaiser, Michael Hoff, Andreas Konle, J. Camilo Vasquez Tieck, David Kappel, Daniel Reichard, Anand Subramoney, Robert Legenstein, Arne Roennau, Wolfgang Maass, Rüdiger Dillmann
Published in: Frontiers in Neurorobotics, Issue 13, 2019, ISSN 1662-5218
DOI: 10.3389/fnbot.2019.00081

Analysis and Model of Cortical Slow Waves Acquired with Optical Techniques

Author(s): Marco Celotto, Chiara De Luca, Paolo Muratore, Francesco Resta, Anna Letizia Allegra Mascaro, Francesco Saverio Pavone, Giulia De Bonis, Pier Stanislao Paolucci
Published in: Methods and Protocols, Issue 3/1, 2020, Page(s) 14, ISSN 2409-9279
DOI: 10.3390/mps3010014

Stochasticity from function — Why the Bayesian brain may need no noise

Author(s): Dominik Dold, Ilja Bytschok, Akos F. Kungl, Andreas Baumbach, Oliver Breitwieser, Walter Senn, Johannes Schemmel, Karlheinz Meier, Mihai A. Petrovici
Published in: Neural Networks, Issue 119, 2019, Page(s) 200-213, ISSN 0893-6080
DOI: 10.1016/j.neunet.2019.08.002

Combining Evolutionary and Adaptive Control Strategies for Quadruped Robotic Locomotion

Author(s): Elisa Massi, Lorenzo Vannucci, Ugo Albanese, Marie Claire Capolei, Alexander Vandesompele, Gabriel Urbain, Angelo Maria Sabatini, Joni Dambre, Cecilia Laschi, Silvia Tolu, Egidio Falotico
Published in: Frontiers in Neurorobotics, Issue 13, 2019, ISSN 1662-5218
DOI: 10.3389/fnbot.2019.00071

A Digital Hardware System for Spiking Network of Tactile Afferents

Author(s): Nima Salimi-Nezhad, Erfan Ilbeigi, Mahmood Amiri, Egidio Falotico, Cecilia Laschi
Published in: Frontiers in Neuroscience, Issue 13, 2020, ISSN 1662-453X
DOI: 10.3389/fnins.2019.01330

QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain

Author(s): Sharon C. Yates, Nicolaas E. Groeneboom, Christopher Coello, Stefan F. Lichtenthaler, Peer-Hendrik Kuhn, Hans-Ulrich Demuth, Maike Hartlage-Rübsamen, Steffen Roßner, Trygve Leergaard, Anna Kreshuk, Maja A. Puchades, Jan G. Bjaalie
Published in: Frontiers in Neuroinformatics, Issue 13, 2019, ISSN 1662-5196
DOI: 10.3389/fninf.2019.00075

Logical negation mapped onto the brain

Author(s): Yosef Grodzinsky, Isabelle Deschamps, Peter Pieperhoff, Francesca Iannilli, Galit Agmon, Yonatan Loewenstein, Katrin Amunts
Published in: Brain Structure and Function, Issue 225/1, 2020, Page(s) 19-31, ISSN 1863-2653
DOI: 10.1007/s00429-019-01975-w

Odor Stimuli: Not Just Chemical Identity

Author(s): Mario Pannunzi, Thomas Nowotny
Published in: Frontiers in Physiology, Issue 10, 2019, ISSN 1664-042X
DOI: 10.3389/fphys.2019.01428

Fast, Flexible Closed-Loop Feedback: Tracking Movement in “Real-Millisecond-Time”

Author(s): Keisuke Sehara, Viktor Bahr, Ben Mitchinson, Martin J. Pearson, Matthew E. Larkum, Robert N. S. Sachdev
Published in: eneuro, Issue 6/6, 2019, Page(s) ENEURO.0147-19.2019, ISSN 2373-2822
DOI: 10.1523/eneuro.0147-19.2019

Brian2GeNN: accelerating spiking neural network simulations with graphics hardware

Author(s): Marcel Stimberg, Dan F. M. Goodman, Thomas Nowotny
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
DOI: 10.1038/s41598-019-54957-7

Accelerated Physical Emulation of Bayesian Inference in Spiking Neural Networks

Author(s): Akos F. Kungl, Sebastian Schmitt, Johann Klähn, Paul Müller, Andreas Baumbach, Dominik Dold, Alexander Kugele, Eric Müller, Christoph Koke, Mitja Kleider, Christian Mauch, Oliver Breitwieser, Luziwei Leng, Nico Gürtler, Maurice Güttler, Dan Husmann, Kai Husmann, Andreas Hartel, Vitali Karasenko, Andreas Grübl, Johannes Schemmel, Karlheinz Meier, Mihai A. Petrovici
Published in: Frontiers in Neuroscience, Issue 13, 2019, ISSN 1662-453X
DOI: 10.3389/fnins.2019.01201

Co-transmission of acetylcholine and GABA regulates hippocampal states

Author(s): Virág T. Takács, Csaba Cserép, Dániel Schlingloff, Balázs Pósfai, András Szőnyi, Katalin E. Sos, Zsuzsanna Környei, Ádám Dénes, Attila I. Gulyás, Tamás F. Freund, Gábor Nyiri
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-05136-1

Synergy of Glutamatergic and Cholinergic Modulation Induces Plateau Potentials in Hippocampal OLM Interneurons

Author(s): Nicholas Hagger-Vaughan, Johan F. Storm
Published in: Frontiers in Cellular Neuroscience, Issue 13, 2019, ISSN 1662-5102
DOI: 10.3389/fncel.2019.00508

Multimodal Memory Components and Their Long-Term Dynamics Identified in Cortical Layers II/III but Not Layer V

Author(s): Dong Li, Guangyu Wang, Hong Xie, Yi Hu, Ji-Song Guan, Claus C. Hilgetag
Published in: Frontiers in Integrative Neuroscience, Issue 13, 2019, ISSN 1662-5145
DOI: 10.3389/fnint.2019.00054

An efficient analytical reduction of detailed nonlinear neuron models

Author(s): Oren Amsalem, Guy Eyal, Noa Rogozinski, Michael Gevaert, Pramod Kumbhar, Felix Schürmann, Idan Segev
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
DOI: 10.1038/s41467-019-13932-6

Stochastic rounding and reduced-precision fixed-point arithmetic for solving neural ordinary differential equations

Author(s): Michael Hopkins, Mantas Mikaitis, Dave R. Lester, Steve Furber
Published in: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Issue 378/2166, 2020, Page(s) 20190052, ISSN 1364-503X
DOI: 10.1098/rsta.2019.0052

Concurrent human TMS-EEG-fMRI enables monitoring of oscillatory brain state-dependent gating of cortico-subcortical network activity

Author(s): Judith C. Peters, Joel Reithler, Tom A. de Graaf, Teresa Schuhmann, Rainer Goebel, Alexander T. Sack
Published in: Communications Biology, Issue 3/1, 2020, ISSN 2399-3642
DOI: 10.1038/s42003-020-0764-0

Optically Induced Calcium-Dependent Gene Activation and Labeling of Active Neurons Using CaMPARI and Cal-Light

Author(s): Christian Ebner, Julia Ledderose, Timothy A. Zolnik, Sina E. Dominiak, Paul Turko, Athanasia Papoutsi, Panayiota Poirazi, Britta J. Eickholt, Imre Vida, Matthew E. Larkum, Robert N. S. Sachdev
Published in: Frontiers in Synaptic Neuroscience, Issue 11, 2019, ISSN 1663-3563
DOI: 10.3389/fnsyn.2019.00016

Dual-beam confocal light-sheet microscopy via flexible acousto-optic deflector

Author(s): Vladislav Gavryusev, Giuseppe Sancataldo, Pietro Ricci, Alberto Montalbano, Chiara Fornetto, Lapo Turrini, Annunziatina Laurino, Luca Pesce, Giuseppe de Vito, Natascia Tiso, Francesco Vanzi, Ludovico Silvestri, Francesco S. Pavone
Published in: Journal of Biomedical Optics, Issue 24/10, 2019, Page(s) 1, ISSN 1083-3668
DOI: 10.1117/1.jbo.24.10.106504

Interfering with a memory without erasing its trace

Author(s): Gesa Lange, Mario Senden, Alexandra Radermacher, Peter De Weerd
Published in: Neural Networks, Issue 121, 2020, Page(s) 339-355, ISSN 0893-6080
DOI: 10.1016/j.neunet.2019.09.027

Whisking Asymmetry Signals Motor Preparation and the Behavioral State of Mice

Author(s): Sina E. Dominiak, Mostafa A. Nashaat, Keisuke Sehara, Hatem Oraby, Matthew E. Larkum, Robert N.S. Sachdev
Published in: The Journal of Neuroscience, Issue 39/49, 2019, Page(s) 9818-9830, ISSN 0270-6474
DOI: 10.1523/jneurosci.1809-19.2019

Near-Death Experience as a Probe to Explore (Disconnected) Consciousness

Author(s): Charlotte Martial, Héléna Cassol, Steven Laureys, Olivia Gosseries
Published in: Trends in Cognitive Sciences, Issue 24/3, 2020, Page(s) 173-183, ISSN 1364-6613
DOI: 10.1016/j.tics.2019.12.010

Indirect and direct training of spiking neural networks for end-to-end control of a lane-keeping vehicle

Author(s): Zhenshan Bing, Claus Meschede, Guang Chen, Alois Knoll, Kai Huang
Published in: Neural Networks, Issue 121, 2020, Page(s) 21-36, ISSN 0893-6080
DOI: 10.1016/j.neunet.2019.05.019

One-shot learning and behavioral eligibility traces in sequential decision making

Author(s): Marco P Lehmann, He A Xu, Vasiliki Liakoni, Michael H Herzog, Wulfram Gerstner, Kerstin Preuschoff
Published in: eLife, Issue 8, 2019, ISSN 2050-084X
DOI: 10.7554/elife.47463

The SONATA data format for efficient description of large-scale network models

Author(s): Kael Dai, Juan Hernando, Yazan N. Billeh, Sergey L. Gratiy, Judit Planas, Andrew P. Davison, Salvador Dura-Bernal, Padraig Gleeson, Adrien Devresse, Benjamin K. Dichter, Michael Gevaert, James G. King, Werner A. H. Van Geit, Arseny V. Povolotsky, Eilif Muller, Jean-Denis Courcol, Anton Arkhipov
Published in: PLOS Computational Biology, Issue 16/2, 2020, Page(s) e1007696, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1007696

Human Pregenual Anterior Cingulate Cortex: Structural, Functional, and Connectional Heterogeneity

Author(s): Nicola Palomero-Gallagher, Felix Hoffstaedter, Hartmut Mohlberg, Simon B Eickhoff, Katrin Amunts, Karl Zilles
Published in: Cerebral Cortex, Issue 29/6, 2018, Page(s) 2552-2574, ISSN 1047-3211
DOI: 10.1093/cercor/bhy124

Functional Connectivity Changes of Key Regions for Motor Initiation in Parkinson’s Disease

Author(s): Lukas Hensel, Felix Hoffstaedter, Julian Caspers, Jochen Michely, Christian Mathys, Julia Heller, Claudia R Eickhoff, Kathrin Reetz, Martin Südmeyer, Gereon R Fink, Alfons Schnitzler, Christian Grefkes, Simon B Eickhoff
Published in: Cerebral Cortex, Issue 29/1, 2018, Page(s) 383-396, ISSN 1047-3211
DOI: 10.1093/cercor/bhy259

ChemBioServer 2.0: an advanced web server for filtering, clustering and networking of chemical compounds facilitating both drug discovery and repurposing

Author(s): Evangelos Karatzas, Juan Eiros Zamora, Emmanouil Athanasiadis, Dimitris Dellis, Zoe Cournia, George M Spyrou
Published in: Bioinformatics, Issue 36/8, 2020, Page(s) 2602-2604, ISSN 1367-4803
DOI: 10.1093/bioinformatics/btz976

Are There Islands of Awareness?

Author(s): Tim Bayne, Anil K. Seth, Marcello Massimini
Published in: Trends in Neurosciences, Issue 43/1, 2020, Page(s) 6-16, ISSN 0166-2236
DOI: 10.1016/j.tins.2019.11.003

Benchmarking a Many-Core Neuromorphic Platform With an MPI-Based DNA Sequence Matching Algorithm

Author(s): Gianvito Urgese, Francesco Barchi, Emanuele Parisi, Evelina Forno, Andrea Acquaviva, Enrico Macii
Published in: Electronics, Issue 8/11, 2019, Page(s) 1342, ISSN 2079-9292
DOI: 10.3390/electronics8111342

Behavioural and brain responses in cognitive trance: A TMS-EEG case study

Author(s): O. Gosseries, M. Fecchio, A. Wolff, L.R.D. Sanz, C. Sombrun, A. Vanhaudenhuyse, S. Laureys
Published in: Clinical Neurophysiology, Issue 131/2, 2020, Page(s) 586-588, ISSN 1388-2457
DOI: 10.1016/j.clinph.2019.11.011

An Introduction to Probabilistic Spiking Neural Networks: Probabilistic Models, Learning Rules, and Applications

Author(s): Hyeryung Jang, Osvaldo Simeone, Brian Gardner, Andre Gruning
Published in: IEEE Signal Processing Magazine, Issue 36/6, 2019, Page(s) 64-77, ISSN 1053-5888
DOI: 10.1109/msp.2019.2935234

Analysis Pipeline for Extracting Features of Cortical Slow Oscillations

Author(s): Giulia De Bonis, Miguel Dasilva, Antonio Pazienti, Maria V. Sanchez-Vives, Maurizio Mattia, Pier Stanislao Paolucci
Published in: Frontiers in Systems Neuroscience, Issue 13, 2019, ISSN 1662-5137
DOI: 10.3389/fnsys.2019.00070

Reversible silencing of endogenous receptors in intact brain tissue using 2-photon pharmacology

Author(s): Silvia Pittolo, Hyojung Lee, Anna Lladó, Sébastien Tosi, Miquel Bosch, Lídia Bardia, Xavier Gómez-Santacana, Amadeu Llebaria, Eduardo Soriano, Julien Colombelli, Kira E. Poskanzer, Gertrudis Perea, Pau Gorostiza
Published in: Proceedings of the National Academy of Sciences, Issue 116/27, 2019, Page(s) 13680-13689, ISSN 0027-8424
DOI: 10.1073/pnas.1900430116

A photoswitchable GABA receptor channel blocker

Author(s): Galyna Maleeva, Daniel Wutz, Karin Rustler, Alba Nin‐Hill, Carme Rovira, Elena Petukhova, Antoni Bautista‐Barrufet, Alexandre Gomila‐Juaneda, Petra Scholze, Franck Peiretti, Mercedes Alfonso‐Prieto, Burkhard König, Pau Gorostiza, Piotr Bregestovski
Published in: British Journal of Pharmacology, Issue 176/15, 2019, Page(s) 2661-2677, ISSN 0007-1188
DOI: 10.1111/bph.14689

A neural cognitive architecture

Author(s): Christian R. Huyck
Published in: Cognitive Systems Research, Issue 59, 2020, Page(s) 171-178, ISSN 1389-0417
DOI: 10.1016/j.cogsys.2019.09.023

Tuning GABAergic Inhibition: Gephyrin Molecular Organization and Functions

Author(s): Rocco Pizzarelli, Marilena Griguoli, Paola Zacchi, Enrica Maria Petrini, Andrea Barberis, Antonino Cattaneo, Enrico Cherubini
Published in: Neuroscience, 2019, ISSN 0306-4522
DOI: 10.1016/j.neuroscience.2019.07.036

Central serotonin modulates neural responses to virtual violent actions in emotion regulation networks

Author(s): Dhana Wolf, Martin Klasen, Patrick Eisner, Florian D. Zepf, Mikhail Zvyagintsev, Nicola Palomero-Gallagher, René Weber, Albrecht Eisert, Klaus Mathiak
Published in: Brain Structure and Function, Issue 223/7, 2018, Page(s) 3327-3345, ISSN 1863-2653
DOI: 10.1007/s00429-018-1693-2

Scene Representations Conveyed by Cortical Feedback to Early Visual Cortex Can Be Described by Line Drawings

Author(s): Andrew T. Morgan, Lucy S. Petro, Lars Muckli
Published in: The Journal of Neuroscience, Issue 39/47, 2019, Page(s) 9410-9423, ISSN 0270-6474
DOI: 10.1523/jneurosci.0852-19.2019

The hippocampus of birds in a view of evolutionary connectomics

Author(s): Christina Herold, Philipp Schlömer, Isabelle Mafoppa-Fomat, Julia Mehlhorn, Katrin Amunts, Markus Axer
Published in: Cortex, Issue 118, 2019, Page(s) 165-187, ISSN 0010-9452
DOI: 10.1016/j.cortex.2018.09.025

Real-time cortical simulation on neuromorphic hardware

Author(s): Oliver Rhodes, Luca Peres, Andrew G. D. Rowley, Andrew Gait, Luis A. Plana, Christian Brenninkmeijer, Steve B. Furber
Published in: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Issue 378/2164, 2019, Page(s) 20190160, ISSN 1364-503X
DOI: 10.1098/rsta.2019.0160

Listening to real-world sounds: fMRI data for analyzing connectivity networks

Author(s): Po-Chih Kuo, Yi-Li Tseng, Karl Zilles, Summit Suen, Simon B. Eickhoff, Juin-Der Lee, Philip E. Cheng, Michelle Liou
Published in: Data in Brief, Issue 26, 2019, Page(s) 104411, ISSN 2352-3409
DOI: 10.1016/j.dib.2019.104411

Transfer learning of deep neural network representations for fMRI decoding

Author(s): Michele Svanera, Mattia Savardi, Sergio Benini, Alberto Signoroni, Gal Raz, Talma Hendler, Lars Muckli, Rainer Goebel, Giancarlo Valente
Published in: Journal of Neuroscience Methods, Issue 328, 2019, Page(s) 108319, ISSN 0165-0270
DOI: 10.1016/j.jneumeth.2019.108319

Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity

Author(s): Tomasz Górski, Romain Veltz, Mathieu Galtier, Hélissande Fragnaud, Jennifer S. Goldman, Bartosz Teleńczuk, Alain Destexhe
Published in: Journal of Computational Neuroscience, Issue 45/3, 2018, Page(s) 223-234, ISSN 0929-5313
DOI: 10.1007/s10827-018-0707-7

Prefrontal cortical ChAT-VIP interneurons provide local excitation by cholinergic synaptic transmission and control attention

Author(s): Joshua Obermayer, Antonio Luchicchi, Tim S. Heistek, Sybren F. de Kloet, Huub Terra, Bastiaan Bruinsma, Ouissame Mnie-Filali, Christian Kortleven, Anna A. Galakhova, Ayoub J. Khalil, Tim Kroon, Allert J. Jonker, Roel de Haan, Wilma D. J. van de Berg, Natalia A. Goriounova, Christiaan P. J. de Kock, Tommy Pattij, Huibert D. Mansvelder
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
DOI: 10.1038/s41467-019-13244-9

Effect of multichannel transcranial direct current stimulation to reduce hypertonia in individuals with prolonged disorders of consciousness: A randomized controlled pilot study

Author(s): Aurore Thibaut, Andrea Piarulli, Géraldine Martens, Camille Chatelle, Steven Laureys
Published in: Annals of Physical and Rehabilitation Medicine, Issue 62/6, 2019, Page(s) 418-425, ISSN 1877-0657
DOI: 10.1016/j.rehab.2019.05.009

Structure learning and the posterior parietal cortex

Author(s): Christopher Summerfield, Fabrice Luyckx, Hannah Sheahan
Published in: Progress in Neurobiology, Issue 184, 2020, Page(s) 101717, ISSN 0301-0082
DOI: 10.1016/j.pneurobio.2019.101717

Multiplexing of Information about Self and Others in Hippocampal Ensembles

Author(s): Jeroen J. Bos, Martin Vinck, Pietro Marchesi, Amos Keestra, Laura A. van Mourik-Donga, Jadin C. Jackson, Paul F.M.J. Verschure, Cyriel M.A. Pennartz
Published in: Cell Reports, Issue 29/12, 2019, Page(s) 3859-3871.e6, ISSN 2211-1247
DOI: 10.1016/j.celrep.2019.11.057

Optimized Reaction Pair of the CysHis Tag and Ni(II)-NTA Probe for Highly Selective Chemical Labeling of Membrane Proteins

Author(s): Naoki Zenmyo, Hiroki Tokumaru, Shohei Uchinomiya, Hirokazu Fuchida, Shigekazu Tabata, Itaru Hamachi, Ryuichi Shigemoto, Akio Ojida
Published in: Bulletin of the Chemical Society of Japan, Issue 92/5, 2019, Page(s) 995-1000, ISSN 0009-2673
DOI: 10.1246/bcsj.20190034

Epileptogenicity Maps of Intracerebral Fast Activities (60–100 Hz) at Seizure Onset in Epilepsy Surgery Candidates

Author(s): Anne-Sophie Job, Olivier David, Lorella Minotti, Fabrice Bartolomei, Stephan Chabardès, Philippe Kahane
Published in: Frontiers in Neurology, Issue 10, 2019, ISSN 1664-2295
DOI: 10.3389/fneur.2019.01263

Regulation of adenylyl cyclase 5 in striatal neurons confers the ability to detect coincident neuromodulatory signals

Author(s): Neil J. Bruce, Daniele Narzi, Daniel Trpevski, Siri C. van Keulen, Anu G. Nair, Ursula Röthlisberger, Rebecca C. Wade, Paolo Carloni, Jeanette Hellgren Kotaleski
Published in: PLOS Computational Biology, Issue 15/10, 2019, Page(s) e1007382, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1007382

A Cerebellum-Inspired Learning Approach for Adaptive and Anticipatory Control

Author(s): Silvia Tolu, Marie Claire Capolei, Lorenzo Vannucci, Cecilia Laschi, Egidio Falotico, Mauricio Vanegas Hernández
Published in: International Journal of Neural Systems, Issue 30/01, 2020, Page(s) 1950028, ISSN 0129-0657
DOI: 10.1142/s012906571950028x

Distribution of GABAergic Neurons and VGluT1 and VGAT Immunoreactive Boutons in the Ferret (Mustela putorius) Piriform Cortex and Endopiriform Nucleus. Comparison With Visual Areas 17, 18 and 19

Author(s): Daniela Navarro, Mayvi Alvarado, Alejandra Figueroa, Cristina Gonzalez-Liencres, Federico Salas-Lucia, Pablo Pacheco, Maria V. Sanchez-Vives, Pere Berbel
Published in: Frontiers in Neuroanatomy, Issue 13, 2019, ISSN 1662-5129
DOI: 10.3389/fnana.2019.00054

Identification of neurobehavioural symptom groups based on shared brain mechanisms.

Author(s): Gunter Schumann
Published in: Nature Human Behaviour, 2019, ISSN 2397-3374
DOI: 10.1038/s41562-019-0738-8.

The Amyloid Precursor Protein C-Terminal Domain Alters CA1 Neuron Firing, Modifying Hippocampus Oscillations and Impairing Spatial Memory Encoding

Author(s): Paula A. Pousinha, Xavier Mouska, Daniela Bianchi, Mariana Temido-Ferreira, Joana Rajão-Saraiva, Rui Gomes, Sebastian P. Fernandez, Ana Rita Salgueiro-Pereira, Carine Gandin, Elisabeth F. Raymond, Jacques Barik, Romain Goutagny, Ingrid Bethus, Luisa V. Lopes, Michele Migliore, Hélène Marie
Published in: Cell Reports, Issue 29/2, 2019, Page(s) 317-331.e5, ISSN 2211-1247
DOI: 10.1016/j.celrep.2019.08.103

Dimensional reduction in networks of non-Markovian spiking neurons: Equivalence of synaptic filtering and heterogeneous propagation delays

Author(s): Maurizio Mattia, Matteo Biggio, Andrea Galluzzi, Marco Storace
Published in: PLOS Computational Biology, Issue 15/10, 2019, Page(s) e1007404, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1007404

Neurophenomenology of near-death experience memory in hypnotic recall: a within-subject EEG study

Author(s): Charlotte Martial, Armand Mensen, Vanessa Charland-Verville, Audrey Vanhaudenhuyse, Daniel Rentmeister, Mohamed Ali Bahri, Héléna Cassol, Jérôme Englebert, Olivia Gosseries, Steven Laureys, Marie-Elisabeth Faymonville
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-50601-6

Size, Shape, and Distribution of Multivesicular Bodies in the Juvenile Rat Somatosensory Cortex: A 3D Electron Microscopy Study

Author(s): M Turegano-Lopez, A Santuy, J DeFelipe, A Merchan-Perez
Published in: Cerebral Cortex, Issue 30/3, 2019, Page(s) 1887-1901, ISSN 1047-3211
DOI: 10.1093/cercor/bhz211

Dissecting the Shared and Context-Dependent Pathways Mediated by the p140Cap Adaptor Protein in Cancer and in Neurons

Author(s): Jennifer Chapelle, Oksana Sorokina, Colin McLean, Vincenzo Salemme, Annalisa Alfieri, Costanza Angelini, Alessandro Morellato, Annie Adrait, Elisabetta Menna, Michela Matteoli, Yohann Couté, Ugo Ala, Emilia Turco, Paola Defilippi, J. Douglas Armstrong
Published in: Frontiers in Cell and Developmental Biology, Issue 7, 2019, ISSN 2296-634X
DOI: 10.3389/fcell.2019.00222

Flexible Multi-Beam Light-Sheet Fluorescence Microscope for Live Imaging Without Striping Artifacts

Author(s): Giuseppe Sancataldo, Vladislav Gavryusev, Giuseppe de Vito, Lapo Turrini, Massimiliano Locatelli, Chiara Fornetto, Natascia Tiso, Francesco Vanzi, Ludovico Silvestri, Francesco Saverio Pavone
Published in: Frontiers in Neuroanatomy, Issue 13, 2019, ISSN 1662-5129
DOI: 10.3389/fnana.2019.00007

Biologically Realistic Mean-Field Models of Conductance-Based Networks of Spiking Neurons with Adaptation

Author(s): Matteo di Volo, Alberto Romagnoni, Cristiano Capone, Alain Destexhe
Published in: Neural Computation, Issue 31/4, 2019, Page(s) 653-680, ISSN 0899-7667
DOI: 10.1162/neco_a_01173

Holistic Recollection via Pattern Completion Involves Hippocampal Subfield CA3

Author(s): Xenia Grande, David Berron, Aidan J. Horner, James A. Bisby, Emrah Düzel, Neil Burgess
Published in: The Journal of Neuroscience, Issue 39/41, 2019, Page(s) 8100-8111, ISSN 0270-6474
DOI: 10.1523/jneurosci.0722-19.2019

Response Dynamics in an Olivocerebellar Spiking Neural Network With Non-linear Neuron Properties

Author(s): Alice Geminiani, Alessandra Pedrocchi, Egidio D’Angelo, Claudia Casellato
Published in: Frontiers in Computational Neuroscience, Issue 13, 2019, ISSN 1662-5188
DOI: 10.3389/fncom.2019.00068

Treating Disorders of Consciousness With Apomorphine: Protocol for a Double-Blind Randomized Controlled Trial Using Multimodal Assessments

Author(s): Leandro R. D. Sanz, Nicolas Lejeune, Séverine Blandiaux, Estelle Bonin, Aurore Thibaut, Johan Stender, Neal M. Farber, Ross D. Zafonte, Nicholas D. Schiff, Steven Laureys, Olivia Gosseries
Published in: Frontiers in Neurology, Issue 10, 2019, ISSN 1664-2295
DOI: 10.3389/fneur.2019.00248

Connectivity differences between consciousness and unconsciousness in non-rapid eye movement sleep: a TMS–EEG study

Author(s): Minji Lee, Benjamin Baird, Olivia Gosseries, Jaakko O. Nieminen, Melanie Boly, Bradley R. Postle, Giulio Tononi, Seong-Whan Lee
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-41274-2

Functional MRI in Macaque Monkeys during Task Switching

Author(s): Elsie Premereur, Peter Janssen, Wim Vanduffel
Published in: The Journal of Neuroscience, Issue 38/50, 2018, Page(s) 10619-10630, ISSN 0270-6474
DOI: 10.1523/jneurosci.1539-18.2018

A cross-validated cytoarchitectonic atlas of the human ventral visual stream

Author(s): Mona Rosenke, Kevin S. Weiner, Michael A. Barnett, Karl Zilles, Katrin Amunts, Rainer Goebel, Kalanit Grill-Spector
Published in: NeuroImage, Issue 170, 2018, Page(s) 257-270, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2017.02.040

Individual structural features constrain the functional connectome

Author(s): Francesca Melozzi, Eyal Bergmann, Julie A. Harris, Itamar Kahn, Viktor Jirsa, Christophe Bernard
Published in: PNAS, 2019, ISSN 1091-6490
DOI: 10.1101/613307

Linking molecular pathways and large-scale computational modeling to assess candidate disease mechanisms and pharmacodynamics in Alzheimer's disease

Author(s): Leon Stefanovski, Paul Triebkorn, Andreas Spiegler, Margarita-Arimatea Diaz-Cortes, Ana Solodkin, Viktor Jirsa, Randy McIntosh, Petra Ritter, The Alzheimer's Disease Neuroimaging Initiative
Published in: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700386/, 2019, ISSN 1662-5188
DOI: 10.1101/600205

Functional determinants of enhanced and depressed inter-areal information flow in NREM sleep between neuronal ensembles in rat cortex and hippocampus

Author(s): Umberto Olcese, Jeroen J Bos, Martin Vinck, Cyriel M.A. Pennartz
Published in: -, 2018, ISSN 0000-0000
DOI: 10.1101/264820

A fast and general method to empirically estimate the complexity of brain responses to transcranial and intracranial stimulations: Supplemental text, figures and table

Author(s): Renzo Comolatti, Andrea Pigorini, Silvia Casarotto, Matteo Fecchio, Guilherme Faria, Simone Sarasso, Mario Rosanova, Olivia Gosseries, Melanie Boly, Olivier Bodart, Didier Ledoux, Jean-Francois Brichant, Lino Nobili, Steven Laureys, Giulio Tononi, Marcello Massimini, Adenauer G Casali
Published in: Cold Spring Harbor Laboratory, 2019, ISSN 0000-0000
DOI: 10.1101/445882

Classification of GABAergic interneurons by leading neuroscientists

Author(s): Mihaljevic, B., R. Benavides-Piccione, C. Bielza, P. Larrañaga, and J. DeFelipe
Published in: Scientific Data, 2019, ISSN 2052-4463
DOI: 10.6084/m9.figshare.9948803

Neurodevelopmental subtypes of bipolar disorder are related to cortical folding patterns: An international multicenter study

Author(s): Samuel Sarrazin, Arnaud Cachia, Franz Hozer, Colm McDonald, Louise Emsell, Dara M Cannon, Michele Wessa, Julia Linke, Amelia Versace, Nora Hamdani, Marc-Antoine D'Albis, Marine Delavest, Mary L. Phillips, Paolo Brambilla, Marcella Bellani, Mircea Polosan, Pauline Favre, Marion Leboyer, Jean-François Mangin, Josselin Houenou
Published in: Bipolar Disorders, Issue 20/8, 2018, Page(s) 721-732, ISSN 1398-5647
DOI: 10.1111/bdi.12664

Vibrational Energy in Proteins Correlates with Topology

Author(s): L. Maggi, P. Carloni, G. Rossetti
Published in: The Journal of Physical Chemistry Letters, Issue 9/22, 2018, Page(s) 6393-6398, ISSN 1948-7185
DOI: 10.1021/acs.jpclett.8b02380

Potentiation of cerebellar Purkinje cells facilitates whisker reflex adaptation through increased simple spike activity

Author(s): Vincenzo Romano, Licia De Propris, Laurens WJ Bosman, Pascal Warnaar, Michiel M ten Brinke, Sander Lindeman, Chiheng Ju, Arthiha Velauthapillai, Jochen K Spanke, Emily Middendorp Guerra, Tycho M Hoogland, Mario Negrello, Egidio D'Angelo, Chris I De Zeeuw
Published in: eLife, Issue 7, 2018, ISSN 2050-084X
DOI: 10.7554/elife.38852

I See Your Effort: Force-Related BOLD Effects in an Extended Action Execution–Observation Network Involving the Cerebellum

Author(s): Letizia Casiraghi, Adnan A S Alahmadi, Anita Monteverdi, Fulvia Palesi, Gloria Castellazzi, Giovanni Savini, Karl Friston, Claudia A M Gandini Wheeler-Kingshott, Egidio D’Angelo
Published in: Cerebral Cortex, Issue 29/3, 2019, Page(s) 1351-1368, ISSN 1047-3211
DOI: 10.1093/cercor/bhy322

Beyond Research Ethics: Dialogues in Neuro-ICT Research

Author(s): Bernd Carsten Stahl, Simisola Akintoye, B. Tyr Fothergill, Manuel Guerrero, Will Knight, Inga Ulnicane
Published in: Frontiers in Human Neuroscience, Issue 13, 2019, ISSN 1662-5161
DOI: 10.3389/fnhum.2019.00105

Association of a Schizophrenia-Risk Nonsynonymous Variant With Putamen Volume in Adolescents

Author(s): Qiang Luo, Qiang Chen, Wenjia Wang, Sylvane Desrivières, Erin Burke Quinlan, Tianye Jia, Christine Macare, Gabriel H. Robert, Jing Cui, Mickaël Guedj, Lena Palaniyappan, Ferath Kherif, Tobias Banaschewski, Arun L. W. Bokde, Christian Büchel, Herta Flor, Vincent Frouin, Hugh Garavan, Penny Gowland, Andreas Heinz, Bernd Ittermann, Jean-Luc Martinot, Eric Artiges, Marie-Laure Paillère-Martinot, F
Published in: JAMA Psychiatry, Issue 76/4, 2019, Page(s) 435, ISSN 2168-622X
DOI: 10.1001/jamapsychiatry.2018.4126

Computational roles of plastic probabilistic synapses

Author(s): Milton Llera-Montero, João Sacramento, Rui Ponte Costa
Published in: Current Opinion in Neurobiology, Issue 54, 2019, Page(s) 90-97, ISSN 0959-4388
DOI: 10.1016/j.conb.2018.09.002

A Metric for Evaluating Neural Input Representation in Supervised Learning Networks

Author(s): Richard R. Carrillo, Francisco Naveros, Eduardo Ros, Niceto R. Luque
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00913

Two Cultures and Our Encyclopaedic Brain

Author(s): Jean-Pierre Changeux
Published in: European Review, Issue 27/1, 2019, Page(s) 54-65, ISSN 1062-7987
DOI: 10.1017/s1062798718000534

Challenges and Perspectives of Quantitative Functional Sodium Imaging (fNaI)

Author(s): Claudia A. M. Gandini Wheeler-Kingshott, Frank Riemer, Fulvia Palesi, Antonio Ricciardi, Gloria Castellazzi, Xavier Golay, Ferran Prados, Bhavana Solanky, Egidio U. D’Angelo
Published in: Frontiers in Neuroscience, Issue 12, 2018, ISSN 1662-453X
DOI: 10.3389/fnins.2018.00810

Prominent Changes in Cerebro-Cerebellar Functional Connectivity During Continuous Cognitive Processing

Author(s): Gloria Castellazzi, Stefania D. Bruno, Ahmed T. Toosy, Letizia Casiraghi, Fulvia Palesi, Giovanni Savini, Egidio D’Angelo, Claudia Angela Michela Gandini Wheeler-Kingshott
Published in: Frontiers in Cellular Neuroscience, Issue 12, 2018, ISSN 1662-5102
DOI: 10.3389/fncel.2018.00331

A Heartbeat Away From Consciousness: Heart Rate Variability Entropy Can Discriminate Disorders of Consciousness and Is Correlated With Resting-State fMRI Brain Connectivity of the Central Autonomic Network

Author(s): Francesco Riganello, Stephen Karl Larroque, Mohamed Ali Bahri, Lizette Heine, Charlotte Martial, Manon Carrière, Vanessa Charland-Verville, Charlène Aubinet, Audrey Vanhaudenhuyse, Camille Chatelle, Steven Laureys, Carol Di Perri
Published in: Frontiers in Neurology, Issue 9, 2018, ISSN 1664-2295
DOI: 10.3389/fneur.2018.00769

Differences in cytoarchitecture of Broca's region between human, ape and macaque brains

Author(s): Nicola Palomero-Gallagher, Karl Zilles
Published in: Cortex, 2018, ISSN 0010-9452
DOI: 10.1016/j.cortex.2018.09.008

Expansion of the effective action around non-Gaussian theories

Author(s): Tobias Kühn, Moritz Helias
Published in: Journal of Physics A: Mathematical and Theoretical, Issue 51/37, 2018, Page(s) 375004, ISSN 1751-8113
DOI: 10.1088/1751-8121/aad52e

"Body –to-head transplant; a ""caputal"" crime? Examining the corpus of ethical and legal issues"

Author(s): Zaev D. Suskin, James J. Giordano
Published in: Philosophy, Ethics, and Humanities in Medicine, Issue 13/1, 2018, ISSN 1747-5341
DOI: 10.1186/s13010-018-0063-2

Spiking neural networks for computer vision

Author(s): Michael Hopkins, Garibaldi Pineda-García, Petruţ A. Bogdan, Steve B. Furber
Published in: Interface Focus, Issue 8/4, 2018, Page(s) 20180007, ISSN 2042-8898
DOI: 10.1098/rsfs.2018.0007

Regional brain volumetry and brain function in severely brain-injured patients


Published in: ISSN 0364-5134
DOI: 10.1002/ana.25214

Public Safety and National Security Implications of the Horsepox Study

Author(s): Jennifer Snow, James Giordano
Published in: Health Security, Issue 16/2, 2018, Page(s) 140-142, ISSN 2326-5094
DOI: 10.1089/hs.2018.0018

Multicontact Co-operativity in Spike-Timing–Dependent Structural Plasticity Stabilizes Networks

Author(s): Moritz Deger, Alexander Seeholzer, Wulfram Gerstner
Published in: Cerebral Cortex, Issue 28/4, 2017, Page(s) 1396-1415, ISSN 1047-3211
DOI: 10.1093/cercor/bhx339

Neuroethics: What It Is, Does, and Should Do

Author(s): James Giordano, John R. Shook
Published in: Health Care Ethics USA | Spring 2018, 2018, ISSN 1072-5490

Sleep-like slow oscillations improve visual classification through synaptic homeostasis and memory association in a thalamo-cortical model

Author(s): Cristiano Capone, Elena Pastorelli, Bruno Golosio, Pier Stanislao Paolucci
Published in: scientific reports, 2018, ISSN 2045-2322

Slow Waves Analysis Pipeline for extracting the Features of the Bi-Modality from the Cerebral Cortex of Anesthetized Mice

Author(s): Giulia De Bonis, Miguel Dasilva, Antonio Pazienti, Maria Victoria Sanchez-Vives, Maurizio Mattia, Pier Stanislao Paolucci
Published in: not applicable, 2019, ISSN 2045-2322

International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts

Author(s): Amy Adams, Stephanie Albin, Katrin Amunts, Tasia Asakawa, Amy Bernard, Jan G. Bjaalie, Khaled Chakli, James O. Deshler, Yves De Koninck, Christoph J. Ebell, Gary Egan, Melina E. Hale, Michael Häusser, Sung-Jin Jeong, Judy Illes, Linda Lanyon, Pingping Li, Yan Li, Pierre Magistretti, Agnes McMahon, Caroline Montojo, Toshihisa Ohtsuka, Shigeo Okabe, Hideyuki Okano, Gang Pei, Alexandre Pouget, Jason
Published in: Neuron, Issue 105/2, 2020, Page(s) 212-216, ISSN 0896-6273
DOI: 10.1016/j.neuron.2020.01.002

Cortical reactivations during sleep spindles following declarative learning

Author(s): Aude Jegou, Manuel Schabus, Olivia Gosseries, Brigitte Dahmen, Geneviève Albouy, Martin Desseilles, Virginie Sterpenich, Christophe Phillips, Pierre Maquet, Christophe Grova, Thien Thanh Dang-Vu
Published in: NeuroImage, Issue 195, 2019, Page(s) 104-112, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2019.03.051

Mind Reading and Writing: The Future of Neurotechnology

Author(s): Pieter R. Roelfsema, Damiaan Denys, P. Christiaan Klink
Published in: Trends in Cognitive Sciences, Issue 22/7, 2018, Page(s) 598-610, ISSN 1364-6613
DOI: 10.1016/j.tics.2018.04.001

Molecular mechanisms underlying striatal synaptic plasticity: relevance to chronic alcohol consumption and seeking

Author(s): Kim T. Blackwell, Armando G. Salinas, Parul Tewatia, Brad English, Jeanette Hellgren Kotaleski, David M. Lovinger
Published in: European Journal of Neuroscience, Issue 49/6, 2019, Page(s) 768-783, ISSN 0953-816X
DOI: 10.1111/ejn.13919

Internal Coordinate Normal Mode Analysis: A Strategy To Predict Protein Conformational Transitions

Author(s): Elisa Frezza, Richard Lavery
Published in: The Journal of Physical Chemistry B, Issue 123/6, 2019, Page(s) 1294-1301, ISSN 1520-6106
DOI: 10.1021/acs.jpcb.8b11913

New approaches for computing ligand–receptor binding kinetics

Author(s): Neil J Bruce, Gaurav K Ganotra, Daria B Kokh, S Kashif Sadiq, Rebecca C Wade
Published in: Current Opinion in Structural Biology, Issue 49, 2018, Page(s) 1-10, ISSN 0959-440X
DOI: 10.1016/j.sbi.2017.10.001

Neuroethics Questions to Guide Ethical Research in the International Brain Initiatives

Author(s): Karen S. Rommelfanger, Sung-Jin Jeong, Arisa Ema, Tamami Fukushi, Kiyoto Kasai, Khara M. Ramos, Arleen Salles, Ilina Singh, Jordan Amadio, Guo-Qiang Bi, Paul Frederick Boshears, Adrian Carter, Anna Devor, Kenji Doya, Hermann Garden, Judy Illes, L. Syd M. Johnson, Lyric Jorgenson, Bang-Ook Jun, Inyoung Lee, Patricia Michie, Tsuyoshi Miyakawa, Eisuke Nakazawa, Osamu Sakura, Hagop Sarkissian, Laura
Published in: Neuron, Issue 100/1, 2018, Page(s) 19-36, ISSN 0896-6273
DOI: 10.1016/j.neuron.2018.09.021

Neuroethical and Social Implications of Using Transcranial Electrical Stimulation to Augment Creative Cognition

Author(s): Adam B. Weinberger, Robert A. Cortes, Adam E. Green, James Giordano
Published in: Creativity Research Journal, Issue 30/3, 2018, Page(s) 249-255, ISSN 1040-0419
DOI: 10.1080/10400419.2018.1488199

Biological Characteristics of Connection-Wise Resting-State Functional Connectivity Strength

Author(s): Rory Pijnenburg, Lianne H Scholtens, Dante Mantini, Wim Vanduffel, Lisa Feldman Barrett, Martijn P van den Heuvel
Published in: Cerebral Cortex, Issue 29/11, 2019, Page(s) 4646-4653, ISSN 1047-3211
DOI: 10.1093/cercor/bhy342

Whole-Brain Multimodal Neuroimaging Model Using Serotonin Receptor Maps Explains Non-linear Functional Effects of LSD

Author(s): Gustavo Deco, Josephine Cruzat, Joana Cabral, Gitte M. Knudsen, Robin L. Carhart-Harris, Peter C. Whybrow, Nikos K. Logothetis, Morten L. Kringelbach
Published in: Current Biology, Issue 28/19, 2018, Page(s) 3065-3074.e6, ISSN 0960-9822
DOI: 10.1016/j.cub.2018.07.083

An endogenous explanation of growth: direct-to-consumer stem cell therapies in PR China, India and the USA

Author(s): Saheli Datta
Published in: Regenerative Medicine, Issue 13/5, 2018, Page(s) 559-579, ISSN 1746-0751
DOI: 10.2217/rme-2017-0144

The high efficacy of muscarinic M4 receptor in D1 medium spiny neurons reverses striatal hyperdopaminergia

Author(s): Anu G. Nair, Liliana R.V. Castro, Marianne El Khoury, Victor Gorgievski, Bruno Giros, Eleni T. Tzavara, Jeanette Hellgren-Kotaleski, Pierre Vincent
Published in: Neuropharmacology, Issue 146, 2019, Page(s) 74-83, ISSN 0028-3908
DOI: 10.1016/j.neuropharm.2018.11.029

Dynamic Redistribution of Plasticity in a Cerebellar Spiking Neural Network Reproducing an Associative Learning Task Perturbed by TMS

Author(s): Alberto Antonietti, Jessica Monaco, Egidio D'Angelo, Alessandra Pedrocchi, Claudia Casellato
Published in: International Journal of Neural Systems, Issue 28/09, 2018, Page(s) 1850020, ISSN 0129-0657
DOI: 10.1142/s012906571850020x

28th Annual Computational Neuroscience Meeting: CNS*2019

Author(s): Jugoslava Acimovic, Tiina Manninen, Heidi Teppola, Sacha van Albada, Markus Diesmann, Marja-Leena Linne
Published in: BMC Neuroscience, Issue 20/S1, 2019, ISSN 1471-2202
DOI: 10.1186/s12868-019-0538-0

Attractor competition enriches cortical dynamics during awakening from anesthesia

Author(s): Núria Tort-Colet, Cristiano Capone, Maria V. Sanchez-Vives, Maurizio Mattia
Published in: BioRxiv, 2019, ISSN 0000-0000
DOI: 10.1101/517102

A new view of dorsal visual cortex in macaques revealed by submillimeter fMRI

Author(s): Qi Zhu, Wim Vanduffel
Published in: bioRxiv, 2019, ISSN 0000-0000
DOI: 10.1101/283051

Computational Models of Astrocytes and Astrocyte–Neuron Interactions: Characterization, Reproducibility, and Future Perspectives

Author(s): Tiina Manninen, Riikka Havela, Marja-Leena Linne
Published in: Computational Glioscience, 2019, Page(s) 423-454
DOI: 10.1007/978-3-030-00817-8_16

A Brain-Inspired Cognitive System that Mimics the Dynamics of Human Thought

Author(s): Yuehu Ji, David Gamez, Christian Huyck
Published in: Artificial Intelligence XXXV - 38th SGAI International Conference on Artificial Intelligence, AI 2018, Cambridge, UK, December 11–13, 2018, Proceedings, Issue 11311, 2018, Page(s) 50-62
DOI: 10.1007/978-3-030-04191-5_4

Extending Redescription Mining to Multiple Views

Author(s): Matej Mihelčić, Sašo Džeroski, Tomislav Šmuc
Published in: Discovery Science - 21st International Conference, DS 2018, Limassol, Cyprus, October 29–31, 2018, Proceedings, Issue 11198, 2018, Page(s) 292-307
DOI: 10.1007/978-3-030-01771-2_19

Improving Cytoarchitectonic Segmentation of Human Brain Areas with Self-supervised Siamese Networks

Author(s): Hannah Spitzer, Kai Kiwitz, Katrin Amunts, Stefan Harmeling, Timo Dickscheid
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part III, Issue 11072, 2018, Page(s) 663-671
DOI: 10.1007/978-3-030-00931-1_76

Learning Continuous Muscle Control for a Multi-joint Arm by Extending Proximal Policy Optimization with a Liquid State Machine

Author(s): Juan Camilo Vasquez Tieck, Marin Vlastelica Pogančić, Jacques Kaiser, Arne Roennau, Marc-Oliver Gewaltig, Rüdiger Dillmann
Published in: Artificial Neural Networks and Machine Learning – ICANN 2018 - 27th International Conference on Artificial Neural Networks, Rhodes, Greece, October 4-7, 2018, Proceedings, Part I, Issue 11139, 2018, Page(s) 211-221
DOI: 10.1007/978-3-030-01418-6_21

Microsaccades for Neuromorphic Stereo Vision

Author(s): Jacques Kaiser, Jakob Weinland, Philip Keller, Lea Steffen, J. Camilo Vasquez Tieck, Daniel Reichard, Arne Roennau, Jörg Conradt, Rüdiger Dillmann
Published in: Artificial Neural Networks and Machine Learning – ICANN 2018 - 27th International Conference on Artificial Neural Networks, Rhodes, Greece, October 4-7, 2018, Proceedings, Part I, Issue 11139, 2018, Page(s) 244-252
DOI: 10.1007/978-3-030-01418-6_24

The Synthetic Psychology of the Self

Author(s): Tony J. Prescott, Daniel Camilleri
Published in: Cognitive Architectures, Issue 94, 2019, Page(s) 85-104
DOI: 10.1007/978-3-319-97550-4_7

A Deep Predictive Coding Network for Inferring Hierarchical Causes Underlying Sensory Inputs

Author(s): Shirin Dora, Cyriel Pennartz, Sander Bohte
Published in: Artificial Neural Networks and Machine Learning – ICANN 2018 - 27th International Conference on Artificial Neural Networks, Rhodes, Greece, October 4-7, 2018, Proceedings, Part III, Issue 11141, 2018, Page(s) 457-467
DOI: 10.1007/978-3-030-01424-7_45

Calibration Method to Improve Transfer from Simulation to Quadruped Robots

Author(s): Gabriel Urbain, Alexander Vandesompele, Francis Wyffels, Joni Dambre
Published in: From Animals to Animats 15 - 15th International Conference on Simulation of Adaptive Behavior, SAB 2018, Frankfurt/Main, Germany, August 14-17, 2018, Proceedings, Issue 10994, 2018, Page(s) 102-113
DOI: 10.1007/978-3-319-97628-0_9

Understanding Interstate Competitiveness and International Security in European Dual-Use Research

Author(s): Saheli Datta Burton, Christine Aicardi, Tara Mahfoud, Nikolas Rose
Published in: Biomimetic and Biohybrid Systems, Issue 10928, 2018, Page(s) 129-133
DOI: 10.1007/978-3-319-95972-6_14

Whisker-RatSLAM Applied to 6D Object Identification and Spatial Localisation

Author(s): Mohammed Salman, Martin J. Pearson
Published in: Biomimetic and Biohybrid Systems, Issue 10928, 2018, Page(s) 403-414
DOI: 10.1007/978-3-319-95972-6_44

Unraveling Brain Modularity Through Slow Oscillations

Author(s): Maurizio Mattia, Maria V. Sanchez-Vives
Published in: Nonlinear Dynamics in Computational Neuroscience, 2019, Page(s) 17-31
DOI: 10.1007/978-3-319-71048-8_2

Streaming Live Neuronal Simulation Data into Visualization and Analysis

Author(s): Simon Oehrl, Jan Müller, Jan Schnathmeier, Jochen Martin Eppler, Alexander Peyser, Hans Ekkehard Plesser, Benjamin Weyers, Bernd Hentschel, Torsten W. Kuhlen, Tom Vierjahn
Published in: High Performance Computing - ISC High Performance 2018 International Workshops, Frankfurt/Main, Germany, June 28, 2018, Revised Selected Papers, Issue 11203, 2018, Page(s) 258-272
DOI: 10.1007/978-3-030-02465-9_18

Local Optimal Transport for Functional Brain Template Estimation

Author(s): T. Bazeille, H. Richard, H. Janati, B. Thirion
Published in: Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019, Proceedings, Issue 11492, 2019, Page(s) 237-248
DOI: 10.1007/978-3-030-20351-1_18

Evaluating the Benefits of Key-Value Databases for Scientific Applications

Author(s): Pol Santamaria, Lena Oden, Eloy Gil, Yolanda Becerra, Raül Sirvent, Philipp Glock, Jordi Torres
Published in: Computational Science – ICCS 2019 - 19th International Conference, Faro, Portugal, June 12–14, 2019, Proceedings, Part I, Issue 11536, 2019, Page(s) 412-426
DOI: 10.1007/978-3-030-22734-0_30

Brain-Inspired Hardware for Artificial Intelligence: Accelerated Learning in a Physical-Model Spiking Neural Network

Author(s): Timo Wunderlich, Akos F. Kungl, Eric Müller, Johannes Schemmel, Mihai Petrovici
Published in: Artificial Neural Networks and Machine Learning – ICANN 2019: Theoretical Neural Computation - 28th International Conference on Artificial Neural Networks, Munich, Germany, September 17–19, 2019, Proceedings, Part I, Issue 11727, 2019, Page(s) 119-122
DOI: 10.1007/978-3-030-30487-4_10

Constraint Exploration of Convolutional Network Architectures with Neuroevolution

Author(s): Jonas Dominik Homburg, Michael Adams, Michael Thies, Timo Korthals, Marc Hesse, Ulrich Rückert
Published in: Advances in Computational Intelligence - 15th International Work-Conference on Artificial Neural Networks, IWANN 2019, Gran Canaria, Spain, June 12-14, 2019, Proceedings, Part II, Issue 11507, 2019, Page(s) 735-746
DOI: 10.1007/978-3-030-20518-8_61

Closed Loop Control of a Compliant Quadruped with Spiking Neural Networks

Author(s): Alexander Vandesompele, Gabriel Urbain, Francis Wyffels, Joni Dambre
Published in: Biologically Inspired Cognitive Architectures 2019 - Proceedings of the Tenth Annual Meeting of the BICA Society, Issue 948, 2020, Page(s) 547-555
DOI: 10.1007/978-3-030-25719-4_71

Efficient Construction of Geometric Nerve Fiber Models for Simulation with 3D-PLI

Author(s): Jan A. Reuter, Felix Matuschke, Nicole Schubert, Markus Axer
Published in: Bildverarbeitung für die Medizin 2019 - Algorithmen – Systeme – Anwendungen. Proceedings des Workshops vom 17. bis 19. März 2019 in Lübeck, 2019, Page(s) 333-338
DOI: 10.1007/978-3-658-25326-4_73

Towards 3D Reconstruction of Neuronal Cell Distributions from Histological Human Brain Sections

Author(s): Timo Dickscheid, Sarah Haas, Sebastian Bludau, Philipp Glock, Marcel Huysegoms, Katrin Amunts
Published in: 2019
DOI: 10.3233/apc190016

Real-Time Cortical Simulations: Energy and Interconnect Scaling on Distributed Systems

Author(s): Francesco Simula, Elena Pastorelli, Pier Stanislao Paolucci, Michele Martinelli, Alessandro Lonardo, Andrea Biagioni, Cristiano Capone, Fabrizio Capuani, Paolo Cretaro, Giulia De Bonis, Francesca Lo Cicero, Luca Pontisso, Piero Vicini, Roberto Ammendola
Published in: 2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 283-290
DOI: 10.1109/empdp.2019.8671627

Arbor — A Morphologically-Detailed Neural Network Simulation Library for Contemporary High-Performance Computing Architectures

Author(s): Nora Abi Akar, Ben Cumming, Vasileios Karakasis, Anne Kusters, Wouter Klijn, Alexander Peyser, Stuart Yates
Published in: 2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 274-282
DOI: 10.1109/empdp.2019.8671560

IO Challenges for Human Brain Atlasing Using Deep Learning Methods - An In-Depth Analysis

Author(s): Lena Oden, Christian Schiffer, Hannah Spitzer, Timo Dickscheid, Dirk Pleiter
Published in: 2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 291-298
DOI: 10.1109/empdp.2019.8671630

Exploring Vestibulo-Ocular Adaptation in a Closed-Loop Neuro-Robotic Experiment Using STDP. A Simulation Study

Author(s): Francisco Naveros, Jesus A. Garrido, Angelo Arleo, Eduardo Ros, Niceto R. Luque
Published in: 2018 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2018, Page(s) 1-9
DOI: 10.1109/iros.2018.8594019

DROM - Enabling Efficient and Effortless Malleability for Resource Managers

Author(s): Marco D'Amico, Marta Garcia-Gasulla, Víctor López, Ana Jokanovic, Raül Sirvent, Julita Corbalan
Published in: Proceedings of the 47th International Conference on Parallel Processing Companion - ICPP '18, 2018, Page(s) 1-10
DOI: 10.1145/3229710.3229752

Multi-Modal Motion Activation for Robot Control Using Spiking Neurons

Author(s): J. Camilo Vasquez Tieck, Lea Steffen, Jacques Kaiser, Arne Roennau, Rudiger Dillmann
Published in: 2018 7th IEEE International Conference on Biomedical Robotics and Biomechatronics (Biorob), 2018, Page(s) 291-298
DOI: 10.1109/biorob.2018.8487786

MPI+OpenMP Tasking Scalability for the Simulation of the Human Brain - Human Brain Project

Author(s): Pedro Valero-Lara, Raül Sirvent, Antonio J. Peña, Xavier Martorell, Jesús Labarta
Published in: Proceedings of the 25th European MPI Users' Group Meeting on - EuroMPI'18, 2018, Page(s) 1-8
DOI: 10.1145/3236367.3236373

Learning to Reproduce Visually Similar Movements by Minimizing Event-Based Prediction Error

Author(s): Jacques Kaiser, Svenja Melbaum, J. Camilo Vasquez Tieck, Arne Roennau, Martin V. Butz, Rudiger Dillmann
Published in: 2018 7th IEEE International Conference on Biomedical Robotics and Biomechatronics (Biorob), 2018, Page(s) 260-267
DOI: 10.1109/biorob.2018.8487959

Efficient Fault Tolerance Through Dynamic Node Replacement

Author(s): Suraj Prabhakaran, Marcel Neumann, Felix Wolf
Published in: 2018 18th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 2018, Page(s) 163-172
DOI: 10.1109/ccgrid.2018.00031

Network-on-chip evaluation for a novel neural architecture

Author(s): Markos Kynigos, Javier Navaridas, Luis A. Plana, Steve Furber
Published in: Proceedings of the 15th ACM International Conference on Computing Frontiers - CF '18, 2018, Page(s) 216-219
DOI: 10.1145/3203217.3203268

Approximate Fixed-Point Elementary Function Accelerator for the SpiNNaker-2 Neuromorphic Chip

Author(s): Mantas Mikaitis, David R Lester, Delong Shang, Steve Furber, Gengting Liu, Jim Garside, Stefan Scholze, Sebastian Hoppner, Andreas Dixius
Published in: 2018 IEEE 25th Symposium on Computer Arithmetic (ARITH), 2018, Page(s) 37-44
DOI: 10.1109/arith.2018.8464785

Benchmarking and Characterization of event-based Neuromorphic Hardware

Author(s): Christoph Ostrau, Christian Klarhorst, Michael Thies, Ulrich Rückert
Published in: FastPath 2019 - Sixth International Workshop on Performance Analysis of Machine Learning Systems, 2019

Integrating clinical data from hospital databases

Author(s): Kostis Karozos, Iosif Spartalis, Artem Tsikiridis, Despoina Trivela, Vasilis Vassalos
Published in: http://ceur-ws.org, Issue Vol-2164, 2018, ISSN 1613-0073

Long short-term memory and learning-to-learn in networks of spiking neurons

Author(s): Guillaume Bellec, Darjan Salaj, Anand Subramoney, Robert Legenstein, Wolfgang Maass
Published in: NIPS 2018, 2018

Work-in-Progress: Impact of Graph Partitioning on SNN Placement for a Multi-Core Neuromorphic Architecture

Author(s): Francesco Barchi, Gianvito Urgese, Enrico Macii, Andrea Acquaviva
Published in: 2018 International Conference on Compilers, Architectures and Synthesis for Embedded Systems (CASES), 2018, Page(s) 1-2
DOI: 10.1109/cases.2018.8516831

Work-in-Progress: Multiple Alignment of Packet Sequences for Efficient Communication in a Many-Core Neuromorphic System

Author(s): Gianvito Urgese, Luca Peres, Francesco Barchi, Enrico Macii, Andrea Acquaviva
Published in: 2018 International Conference on Compilers, Architectures and Synthesis for Embedded Systems (CASES), 2018, Page(s) 1-2
DOI: 10.1109/cases.2018.8516870

Two Simple NeuroCognitive Associative Memory Models

Author(s): Christian R. Huyck, Yuhue Ji
Published in: Proceedings of the 16th International Conference on Cognitive Modeling (ICCM 2018), 2018, Page(s) 31-36

Non-Linear Motor Control by Local Learning in Spiking Neural Networks

Author(s): Aditya Gilra and Wulfram Gerstner
Published in: PMLR, 2018, ISSN 2640-3498

Deep Rewiring: Training Very Sparse Deep Networks

Author(s): Guillaume Bellec, David Kappel, Wolfgang Maass, Robert Legenstein
Published in: ICLR 2018, 2018

Pattern recognition using latency coding in multilayer spiking neural networks

Author(s): Brian Gardner, André Grüning
Published in: Bernstein Conference 2018, 2018
DOI: 10.12751/nncn.bc2018.0112

Efficient Job Scheduling for Clusters with Shared Tiered Storage

Author(s): Leah E. Lackner, Hamid Mohammadi Fard, Felix Wolf
Published in: 2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 2019, Page(s) 321-330
DOI: 10.1109/ccgrid.2019.00046

Deep reinforcement learning in a time-continuous model

Author(s): Akos Ferenc Kungl, Dominik Dold, Oskar Riedler, Walter Senn, Mihai Alexandru Petrovici
Published in: 2019
DOI: 10.12751/nncn.bc2019.0168

Holistic Slowdown Driven Scheduling and Resource Management for Malleable Jobs

Author(s): Marco D'Amico, Ana Jokanovic, Julita Corbalan
Published in: Proceedings of the 48th International Conference on Parallel Processing - ICPP 2019, 2019, Page(s) 1-10
DOI: 10.1145/3337821.3337909

ViTa-SLAM: A Bio-inspired Visuo-Tactile SLAM for Navigation while Interacting with Aliased Environments

Author(s): Oliver Struckmeier, Kshitij Tiwari, Mohammed Salman, Martin J. Pearson, Ville Kyrki
Published in: 2019

ViTa-SLAM: Biologically-Inspired Visuo-Tactile SLAM

Author(s): Oliver Struckmeier, Kshitij Tiwari, Martin J Pearson, Ville Kyrki
Published in: 2019

Event-based computation: Unsupervised elementary motion decomposition.

Author(s): Bogdan PA, Pineda-García G, Davidson S, Hopkins M, James R and Furber SB
Published in: 2019

Accelerated simulation of a neuronal population via mathematical model order reduction

Author(s): Mikko Lehtimäki, Ippa Seppälä, Lassi Paunonen, Marja-Leena Linne
Published in: 2020

Co-Development of an Infant Prototype in Hardware and Simulation based on CT Imaging Data.

Author(s): Feldotto, Benedikt; Walch, Blasius; Koch, Patrick; Dendorfer, Sebastian; Knoll, Alois
Published in: 2020

Motion Prediction of Virtual Patterns, Human Hand Motions and a simplified Hand Manipulation Task with Hierarchical Temporal Memory

Author(s): Tenbrink, Lukas; Feldotto, Benedikt; Röhrbein, Florian; Knoll, Alois
Published in: 2020

Integration of Paired Spiking Cerebellar Models for Voluntary Movement Adaptation in a Closed-Loop Neuro-Robotic Experiment. A Simulation Study

Author(s): Corchado, Carlos; Antonietti, Alberto; Capolei, Marie Claire; Casellato, Claudia; Tolu, Silvia
Published in: 2019

Nonlinear scaling of resource allocation in sensory bottlenecks

Author(s): Laura Rose Edmondson, Alejandro Jimenez-Rodriguez, Hannes P. Saal
Published in: 2019

Development of the neurorobotic mouse

Author(s): P. Lucas, S. Oota, J. Conradt, and A. Knoll
Published in: 2019

NIPS Proceedings

Author(s): Talfan Evans, Neil Burgess
Published in: 2019

Real-time cortical simulations: energy and interconnect scaling on distributed systems

Author(s): Francesco Simula, Elena Pastorelli, Pier Stanislao Paolucci, Michele Martinelli, Alessandro Lonardo, Andrea Biagioni, Cristiano Capone, Fabrizio Capuani, Paolo Cretaro , Giulia De Bonis, Francesca Lo Cicero, Luca Pontisso, Piero Vicini, Roberto Ammendola
Published in: 2018

ETAI 2018 International Conference : Proceedings of Abstracts. Skopje: Faculty of Electrical Engineering and Information Technology

Author(s): STEPIŠNIK PERDIH, Tomaž, KOCEV, Dragi, DŽEROSKI, Sašo
Published in: 2018

Directed Graph Placement for SNN Simulation into a multi-core GALS Architecture

Author(s): Francesco Barchi, Gianvito Urgese, Andrea Acquaviva, Enrico Macii
Published in: 2018 IFIP/IEEE International Conference on Very Large Scale Integration (VLSI-SoC), 2018, Page(s) 19-24
DOI: 10.1109/vlsi-soc.2018.8644782

Cerebellum-inspired approach for adaptive kinematic control of soft robots

Author(s): Hari Teja Kalidindi, Thomas George Thuruthel, Cecilia Laschi, Egidio Falotico
Published in: 2019 2nd IEEE International Conference on Soft Robotics (RoboSoft), 2019, Page(s) 684-689
DOI: 10.1109/robosoft.2019.8722735

Efficient Bundled Spatial Range Queries

Author(s): Eleni Tzirita Zacharatou, Darius Šidlauskas, Farhan Tauheed, Thomas Heinis, Anastasia Ailamaki
Published in: Proceedings of the 27th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2019, Page(s) 139-148
DOI: 10.1145/3347146.3359077

Constraints on sequence processing speed in biological neuronal networks

Author(s): Younes Bouhadjar, Markus Diesmann, Rainer Waser, Dirk J. Wouters, Tom Tetzlaff
Published in: Proceedings of the International Conference on Neuromorphic Systems, 2019, Page(s) 1-9
DOI: 10.1145/3354265.3354281

Structured motor exploration for adaptive learning-based tracking in soft robotic manipulators

Author(s): Yasmin Ansari, Cecilia Laschi, Egidio Falotico
Published in: 2019 2nd IEEE International Conference on Soft Robotics (RoboSoft), 2019, Page(s) 534-539
DOI: 10.1109/robosoft.2019.8722767

The OTree: Multidimensional Indexing with efficient data Sampling for HPC

Author(s): Cesare Cugnasco, Hadrien Calmet, Pol Santamaria, Raul Sirvent, Ane Beatriz Eguzkitza, Guillaume Houzeaux, Yolanda Becerra, Jordi Torres, Jesus Labarta
Published in: 2019 IEEE International Conference on Big Data (Big Data), 2019, Page(s) 433-440
DOI: 10.1109/bigdata47090.2019.9006121

Projection-based order reduction of a nonlinear biophysical neuronal network model

Author(s): Mikko Lehtimaki, Lassi Paunonen, Marja-Leena Linne
Published in: 2019 IEEE 58th Conference on Decision and Control (CDC), 2019, Page(s) 1-6
DOI: 10.1109/cdc40024.2019.9029510

Quantification of fiber orientation uncertainty in polarized light imaging of the human brain

Author(s): Daniel Schmitz, Thomas Lippert, Katrin Amunts, Markus Axer
Published in: Medical Imaging 2020: Physics of Medical Imaging, 2020, Page(s) 117
DOI: 10.1117/12.2548935

Microsaccades for asynchronous feature extraction with spiking networks

Author(s): Jacques Kaiser, Gerd Lindner, J. Camilo Vasquez Tieck, Martin Schulze, Michael Hoff, Arne Roennau, Rudiger Dillmann
Published in: 2018 Joint IEEE 8th International Conference on Development and Learning and Epigenetic Robotics (ICDL-EpiRob), 2018, Page(s) 139-146
DOI: 10.1109/devlrn.2018.8761007

The Collaborative Virtual Reality Neurorobotics Lab

Author(s): Carl Matthes, Tim Weissker, Emmanouil Angelidis, Alexander Kulik, Stephan Beck, Andre Kunert, Anton Frolov, Sandro Weber, Adrian Kreskowski, Bernd Froehlich
Published in: 2019 IEEE Conference on Virtual Reality and 3D User Interfaces (VR), 2019, Page(s) 1671-1674
DOI: 10.1109/vr.2019.8798289

Rank Selection in Non-negative Matrix Factorization: systematic comparison and a new MAD metric

Author(s): Laura Muzzarelli, Susanne Weis, Simon B. Eickhoff, Kaustubh R. Patil
Published in: 2019 International Joint Conference on Neural Networks (IJCNN), 2019, Page(s) 1-8
DOI: 10.1109/ijcnn.2019.8852146

Multi-Ray Jumping: Comprehensible Group Navigation for Collocated Users in Immersive Virtual Reality

Author(s): Tim Weissker, Alexander Kulik, Bernd Froehlich
Published in: 2019 IEEE Conference on Virtual Reality and 3D User Interfaces (VR), 2019, Page(s) 136-144
DOI: 10.1109/vr.2019.8797807

Obstacle Avoidance Using Stereo Vision and Deep Reinforcement Learning in an Animal-like Robot

Author(s): Fuhai Ling, Alejandro Jimenez-Rodriguez, Tony J. Prescott
Published in: 2019 IEEE International Conference on Robotics and Biomimetics (ROBIO), 2019, Page(s) 71-76
DOI: 10.1109/robio49542.2019.8961639

When is an action caused from within? Quantifying the causal chain leading to actions in simulated agents

Author(s): Bjørn Erik Juel, Renzo Comolatti, Giulio Tononi, Larissa Albantakis
Published in: The 2019 Conference on Artificial Life, 2019, Page(s) 477-484
DOI: 10.1162/isal_a_00207

A Graph Signal Processing Approach to Study High Density EEG Signals in Patients with Disorders of Consciousness

Author(s): Sepehr Mortaheb, Jitka Annen, Camille Chatelle, Helena Cassol, Geraldine Martens, Aurore Thibaut, Olivia Gosseries, Steven Laureys
Published in: 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2019, Page(s) 4549-4553
DOI: 10.1109/embc.2019.8856436

Gaussian and Exponential Lateral Connectivity on Distributed Spiking Neural Network Simulation

Author(s): Elena Pastorelli, Pier Stanislao Paolucci, Francesco Simula, Andrea Biagioni, Fabrizio Capuani, Paolo Cretaro, Giulia De Bonis, Francesca Lo Cicero, Alessandro Lonardo, Michele Martinelli, Luca Pontisso, Piero Vicini, Roberto Ammendola
Published in: 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP), 2018, Page(s) 658-665
DOI: 10.1109/pdp2018.2018.00110

Contributions to Bayesian network classifiers and interneuron classification

Author(s): Bojan Mihaljevic
Published in: 2018
DOI: 10.20868/upm.thesis.52440

Directional-linear Bayesian networks and applications in neuroscience

Author(s): Ignacio Leguey Vitoriano
Published in: 2018
DOI: 10.20868/upm.thesis.51432

Efficient Query Processing for Spatial and Temporal Data Exploration

Author(s): Tzirita Zacharatou, Eleni
Published in: 2019
DOI: 10.5075/epfl-thesis-9637

The place-cell representation of a four-room maze with changeable connectivity

Author(s): Anyi Liu
Published in: 2020

Exploring synaptic transmission and regulation in ionotropic receptors by molecular dynamics and computational electrophysiology

Author(s): Adrien Cerdan
Published in: 2019

Method development for co-simulation of electrical-chemical systems in Neuroscience

Author(s): Ekaterina Brocke
Published in: 2020

Brain, consciousness and disorders of consciousness at the intersection of neuroscience and philosophy

Author(s): Michele Farisco
Published in: 2019

Electrophysiological Markers of Consciousness: Measures of connectivity, complexity, and signal diversity in EEG for distinguishing between conscious and unconscious brain states

Author(s): Bjørn Erik Juel
Published in: 2019

PhD thesis: Device Variability in Synapses of Neuromorphic Circuits

Author(s): Christoph Koke
Published in: 2018
DOI: 10.11588/heidok.00022742

Timely and cost-efficient data exploration through adaptive tuning

Author(s): Matthaios-Alexandros Olma
Published in: 2019
DOI: 10.5075/epfl-thesis-9636

Intelligence Science II - Third IFIP TC 12 International Conference, ICIS 2018, Beijing, China, November 2-5, 2018, Proceedings

Author(s): Zhongzhi ShiCyriel PennartzTiejun Huang
Published in: Intelligence Science II,, 2018
DOI: 10.1007/978-3-030-01313-4

2nd HBP Student Conference- Transdisciplinary Research Linking Neuroscience, Brain Medicine and Computer Science - Book of Abstracts

Author(s): A. Santuy, N. Simidjievski, M. Armendariz, P. Bogdan, C. Canova, C. Modenato, A. Mosinska
Published in: 2019
DOI: 10.3389/978-2-88945-588-1

Ethics in Innovation Management as Meta-Responsibility: The Practice of Responsible Research and Innovation in Human Brain Simulation

Author(s): Bernd Carsten Stahl, Jos Timmermans, Stephen Rainey, Mark Shaw
Published in: 2019

SpiNNaker-A Spiking Neural Network Architecture

Author(s): Steve Furber, Petrut Bogdan (editors)
Published in: 2020
DOI: 10.1561/9781680836530

Control of Cardiac Function in vivo with a Light-Regulated Drug

Author(s): Fabio Riefolo, Carlo Matera, Aida Garrido-Charles, Alexandre M. J. Gomila, Luca Agnetta, Enrique Claro, Roser Masgrau, Ulrike Holzgrabe, Montserrat Batlle, Michael Decker, Eduard Guasch, Pau Gorostiza
Published in: 2019
DOI: 10.26434/chemrxiv.7472174.v1

Minimum Information for Neuroscience Data Sets (MINDS): The metadata standard of the Human Brain Project data sharing platform.

Author(s): Zehl L, Zafarnia S, Köhnen S, Hilverling A, Andersson K, Legouée E, Hagen Blixhavn C, Aasebø IE, Puchades MA, Schlegel U, Kleven H, Schmid O, Gillespie T, Abrams MB, Davison A, Leergaard TB, Amunts K, Bjaalie JG, Dickscheid T
Published in: 2019
DOI: 10.12751/incf.ni2019.0068

The Limits of Dual Use

Author(s): Mahfoud, Tara, Christine Aicardi, Saheli Datta, and Nikolas Rose
Published in: 2018

Statistical field theory for neural networks

Author(s): Moritz Helias, David Dahmen
Published in: 2019

Self-consistent formulations for stochastic nonlinear neuronal dynamics

Author(s): Jonas Stapmanns, Tobias Kühn, David Dahmen, Thomas Luu, Carsten Honerkamp, Moritz Helias
Published in: 2018

Dendritic cortical microcircuits approximate the backpropagation algorithm

Author(s): João Sacramento, Rui Ponte Costa, Yoshua Bengio, Walter Senn
Published in: 2018

Contextual Encoder-Decoder Network for Visual Saliency Prediction




Sizing the length of complex networks




Improving Spatial Data Processing by Clipping Minimum Bounding Boxes

Author(s): Sidlauskas, Darius ; Sean Chester ; Tzirita Zacharatou, Eleni ; Ailamaki, Anastasia
Published in: 2018

Biologically inspired alternatives to backpropagation through time for learning in recurrent neural nets

Author(s): Guillaume Bellec, Franz Scherr, Elias Hajek , Darjan Salaj , Robert Legenstein , and Wolfgang Maass
Published in: 2019

Reconciliation of weak pairwise spike-train correlations and highly co- herent local field potentials across space

Author(s): Johanna Senk, Espen Hagen, Sacha J. van Albada, Markus Diesmann
Published in: 2018

A model for structured information representation in neural networks

Author(s): Michael G. Müller, Christos H. Papadimitriou, Wolfgang Maass, Robert Legenstein
Published in: 2019

Multi-area-model

Author(s): Schmidt M.
Published in: 2018

Neurorobotic Mouse (NeRmo) V4.1

Author(s): Lucas, P. ; Morin, F. O. ; Conradt, J. ; Knoll, A.
Published in: 2020
DOI: 10.14459/2020md1540519

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Author(s): Johannes Schemmel
Published in: 2019
DOI: 10.17885/heiup.ruca.2019.15.24099

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Author(s): U. Ferrari, S. Deny, A. Sengupta, R. Caplette, J.A. Sahel, D. Dalkara, S. Picaud, J. Duebel, O. Marre
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DOI: 10.1101/470773

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Author(s): Peer Lucas, Florian Walter, Alois Knoll
Published in: 2018
DOI: 10.14459/2018md1464578

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Author(s): Oren Amsalem, Guy Eyal, Noa Rogozinski, Idan Segev
Published in: BioRxiv, 2018
DOI: 10.1101/506485

Whole-neuron synaptic mapping reveals local balance between excitatory and inhibitory synapse organization

Author(s): Daniel Maxim Iascone, Yujie Li, Uygar Sumbul, Michael Doron, Hanbo Chen, Valentine Andreu, Finola Goudy, Idan Segev, Hanchuan Peng, Franck Polleux
Published in: 2018
DOI: 10.1101/395384

A mesoscopic layered cortical network model for spiking activity and local field potentials

Author(s): Johanna Senk, Espen Hagen, Sacha J. van Albada, Markus Diesmann
Published in: 2018
DOI: 10.12751/nncn.bc2018.0163