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Human Brain Project Specific Grant Agreement 2

Rezultaty

D4.4.1 All Models of Key Cognitive Processes developed during SGA2

Presentation of all models developed by WP4.4 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D2.4.1 Software tool for brain structure - phenotype associations

Software tool for brain structure - phenotype associations implemented (T2.4.2); software available for usage

D9.1.1 Working prototype of a Collaboratory app for graphical model building

Collaboratory app usable by an SP9 member outside the developer team

D5.6.1 Interactive classifier training via the new Viewer

Users can train machine learning algorithms interactively by giving annotations in the web-based Viewer (T5.6.1)

D2.6.1 Tool for Morphological classification of neurons

Tool for Morphological classification of neurons (T2.6.4) made available; storage of software on HBP Collab

D5.3.1 New release of interactive spatial alignment tool

We will deploy the 2nd release of the interactive spatial alignment tool started in SGA1. The release will provide a significantly streamlined user interface, especially a much better user experience in terms of landmark management and interactive navigation. (T5.3.3)

D7.3.1 Multi-compartment benchmark and validation suites on HPC systems

The validation and benchmark suites for multi- compartment simulators are deployed and their associated documentation can be downloaded from public repositories; the continuous integration framework is publishing up to date validation and benchmark results from HPC systems used in the HBP.

D9.5.1 Temporal filtering network

Network for temporal filtering running on SpiNNaker (Task 9.5.1)

D2.3.1 Alignment strategy of datasets from TPFM, 3D-PLI, and dMRI

Alignment strategy of datasets from TPFM, 3D-PLI, and dMRI implemented (T2.3.4); Datasets made available in the HBP human brain atlas

D9.3.1 PyNN 0.9 on SpiNNaker

As complete a PyNN 0.9 implementation on SpiNNaker as possible (Task 9.3.3)

D5.7.1 Representations of optical imaging data in the Neo data object model

This is a release of the Neo library that contains support for the representations of optical imaging data. This feature will facilitate the analysis of activity data obtained from optical imaging experiments using tools built on the Neo data model. Successful representation of a dataset in the Neo object model, and the subsequent application of an analysis function of the Elephant framework on that data object, will be shown (T5.7.1-2)

D4.3.1 All Models of Plasticity, Learning and Memory developed during SGA2

Presentation of all models developed by WP4.3 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D4.5.1 All Whole-Brain Models developed during SGA2 and Comparison with Experiments

Presentation of all models developed by WP4.5 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D2.1.1 Comparison of Deep-learning based cytoarchitectonic mapping of cortex in the big brain against gold standard cytoarchitectonic map

Deep-learning based cytoarchitectonic mapping of cortex in the big brain and comparison against gold standard cytoarchitectonic map (T2.1.4); map made available in the HBP human brain atlas

D8.5.3 Μedical Informatics Platform Releases - SOFTWARE & REPORT

Μedical Informatics Platform Releases - SOFTWARE & REPORT

D5.4.1 First release of software adapted to new Viewer Architecture

Coordinated release of several services related to atlas viewers, adapted to a more unified viewer infrastructure. The architecture of this unified viewer ecosystem will be specified by SP5 towards the end of SGA1 and become the basis for this work. (T5.4.3)

D4.2.1 All Models of Brain Circuits developed during SGA2

Presentation of all models developed by WP4.2 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D4.1.1 All Models for Bridging Scales developed during

Presentation of all models developed by WP4.1 during the SGA2, including: functions and performance, validation (by SP4, by rest of the HBP and/or by third parties), how results compare to targeted impact, and links to models and related datasets in publicly accessible online repositories.

D6.1.1 SP6 Annual Compound Deliverable Year 1

Overview of key results and impact achieved in M1-M12, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).

D12.4.1 Data Policy Manual

Having a set of data-related policies is a requirement for the HBP in order to: -Ensure that expectations with regards to data handling are clear -Comply with all data-related regulations and legislation, in particular those related to data protection -Ensure that all data registered and used in the HBP comply with ethical and other requirements -Demonstrate good management and leadership and implement good practice in data management Milestone verified by upload of the Data Policy Manual.

D1.6.2 SP1 Mouse Brain Organisation and Interspecies Comparisons - Second Data Results package (update on implementation of the DMP - M24)

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: final report on the SP1 planned deliveries. This report will include the datasets generated in the SGA2 on whole brain and four major brain circuits (neocortex, cerebellum, basal ganglia, and hippocampus) data. This report will also include the final results on the integration of molecular, cellular and functional data (neocortex, cerebellum, basal ganglia, and hippocampus) and its application for modelling.

D1.3.2 CDP1 Annual Compound Deliverable Year 2

CDP1 Annual Compound Deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)

D5.1.1 Completion of SGA1 data/model curation into NIP meta data database

Table showing link between data/model components in PLA and curated data/models in NIP (T5.1.1-2)

D8.6.1 CDP6 Results SGA2 Year 1 Implementation for accurate HPC-based screening protocols of neuro-drug candidates

CDP6 Results SGA2 Year 1 Implementation for accurate HPC-based screening protocols of neuro-drug candidates. CDP6 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will also refer to results for SGA2_HPC-based chemical optimisation codes and increasing ligand specificity toward receptors' subclasses

D9.6.2 SP9 Neuromorphic Computing Platform - Results from SGA2 year 2

The summary of SP 9 results for project months M13-24, broken down by task. WPs involved: WP9.1, WP9.2, WP9.3, WP9.4, WP9.5 and WP9.6 In order to report fully, the Deliverable may need to include information that the SP does not wish to make public at the time of the report. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published publicly.

D6.4.1 CDP2 Annual Compound Deliverable Year 2

Overview of key results and impact achieved in M13-M24, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).

D2.7.3 CDP3 Results for SGA2 Year 1

CDP3 SGA2 Results Overview Deliverable: Overview of Key Results achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public)

D10.5.2 SP10 Neurorobotics Platform - Results for SGA2 Year 2

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4 & WP10.5 Summary of SP Results for M12-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications

D7.2.1 Key technologies for fast data access and retrieval

This report summarises key technologies to support fast data access and retrieval for interactive analysis and visualisation, which have been identified and tested. This deliverable does not yet comprise the final implementation of these technologies.

D12.3.2 2nd Report SP12-SGA2: Lessons from stakeholder engagement and dialogue

The report collects up on the lessons learned from stakeholder dialogue and engagement in the Human Brain Project, from the ramp-up to the end of the SGA2 phase, and it develops foundation for stakeholder engagement in the final phases of the Human Brain Project.

D11.5.1 Fourth HBP Curriculum teaching cycle released (T11.5.2)

Third HBP Curriculum teaching cycle through online questionnaire evaluated and online courses adapted. Fourth teaching cycle started and Call for Expression of Interest for HBP Curriculum Workshops announced. Evaluation results are made available for consortium members and the public upon request. Call for Expression of Interest announced to the scientific community.

D8.5.1 Software requirements specifications (SRS) - REPORT

Software requirements specifications (SRS) - REPORT

D6.3.1 SP6 Annual Compound Deliverable Year 2

Overview of key results and impact achieved in M13-M24, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).

D5.8.2 SP5 Neuroinformatics Platform - Results for SGA2 Year 2

Summary of SP Results for M13-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP Products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website.

D12.3.1 Report on SP12-SGA2 Citizen engagement

Report on citizen engagement activities across Europe, including recommendations from citizens to the Human Brain Project.

D8.4.1 Reports on disease signatures via sub-type identification, on development and application of methods, and tools

Report on identification of disease signatures and application development is delivered.

D5.2.1 Release of updated atlas curation supporting material

Users can access tutorials and SOPs from HBP workbench or request support from UiO atlas curation team (T5.2.2)

D5.8.1 SP5 Neuroinformatics Platform - Results for SGA2 Year 1

SP5 Neuroinformatics Platform - Results for SGA2 Year 1 Summary of SP Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP Products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications o SP Roadmap for SGA2, validated by other SPs receiving inputs from your SP NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website.

D8.3.1 Signed partnership with one European reference network

Signed partnership with one European reference network

D3.6.1 Systems and Cognitive Neuroscience - Results for SGA2 Year 1

WPs involved: WP3.1, WP3.2., WP3.3, WP3.4, WP3.5, WP3.6 Summary of SP3 Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications

D2.7.4 CDP3 Results for SGA2 Year 2

CDP3 SGA2 Results Overview Deliverable Overview of Key Results achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public)

D9.4.1 CDP5-Biological deep learning: Results for SGA2 Year 1

CDP5-Biological deep learning: Results for SGA2 Year 1 CDP5 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will be a public report including theoretical research on learning principles, their transfer to the HBP computing infrastructures in SP7 and SP9, results of initial experiments and plans for M13 to M24 in SGA2

D4.6.1 SP4 EITN activity report

Report on EITN activity, its success, points that can be improved and what is foreseen

D8.2.1 MIP installed in Thirty Hospitals

MIP installed in Thirty Hospitals Demonstration of MIP software installation in 30 hospitals. Demonstration will be in form of a summary report of results: data profiling in each site, issues and lessons learned, user tests and feedback received during the hand-over and training.

D5.10.1 CDP8 Results SGA2

CDP8 SGA2 Results Overview Deliverable: Overview of Key Results achieved in M1 to M24, tailored for presentation to the relevant audiences. WPs involved: WP5.10. Key results involved: KRc8.1, KRc8.2, KRc8.3. Use cases involved: SGA2-SP4-UC001, SGA2-SP5-UC001, SGA2-SP5-UC002, SGA2-SP6-UC001, SGA2-SP6-UC003, SGA2-SP7-UC001, SGA2-SP11-UC003. The report summarizes the results obtained during the project phase, which will involve: code for large-scale brain simulation on HBP’s Joint Platform; code for connectome extraction and integration of results into NIP ontology; interactive tutorials; preprocessed connectomes from major repositories; online version of von Economo and Koskinas atlas; linked connectivity to architectonic data; human connectivity predictions.

D1.6.3 SP1 Mouse Brain Organisation and Interspecies Comparisons - Comparative study of cells and microcircuits in the rodent and human brain

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: report on the final comparative study of cells and microcircuits in the rodent and human brain.

D7.6.1 SP7 High-Performance Analytics and Computing Platform - Results for SGA2 Year 1

High Performance Analytics and Computing Platform v2.5. The Platform, accessible to end users through the HBP Collaboratory, will provide the HBP and the neuroscience community with access to federated data and scalable compute resources as well as visualisation and simulation technology.

D9.4.2 CDP5-Biological deep learning: Results for SGA2 Year 2

CDP5 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will be a public report including theoretical research on learning principles, their transfer to the HBP computing infrastructures in SP7 and SP9, final experimental results and applications, an evaluation of the developments outside the HBP and a planning outlook to SGA3.

D12.2.1 Report on conceptual issues in human identity

Report on conceptual issues in human identity.

D2.7.2 SP2 Human Brain Organisation - Results for SGA2 Year 2

WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M13-24

D8.10.1 Provide operational MIP infrastructures to UKAACHEN and CHARITE

Provide operational MIP infrastructures to UKAACHEN (P73) and CHARITE (P122), to develop and implement a pathophysiological model for neurobehavioural symptom clustering. Test run and report of data analysis.

D7.6.2 SP7 High-Performance Analytics and Computing Platform - Results for SGA2 Year 2

High Performance Analytics and Computing Platform v3. The Platform, accessible to end users through the HBP Collaboratory, will provide the HBP and the neuroscience community with access to federated data and scalable compute resources. It will also provide visualisation and exascale-ready simulation technology.

D8.1.2 SP8 MIP - Results for SGA2 Year 2

SP8 MIP - Results for SGA2 period 2 SP8 Summary of Results for M12-24: actual vs. planned results o Risks and Issues log updated o Key Results, Impact status & Exceptional Achievements (from users' perspective) o Dependent results flow (i.e. if/how dependent components were incorporated into the next) o Milestones due and achieved, how validated, by whom o Milestones due but not achieved, why, impact, corrective action o Lessons Learned (and if any incorporated already) o Product Roadmap updated o Platform User feedback on the period o Publications

D6.2.1 CDP2 Annual Compound Deliverable Year 1

Overview of key results and impact achieved in M1-M12, tailored for presentation to the relevant audiences (research/industry/public). References to HBP/SP/CDP objectives and use cases for navigation between multiple Subprojects. Linkage of results to components/a set of component factsheets (lower-level information: component ownership, technology readiness level, performed quality control checks, etc.).

D1.6.1 SP1 Mouse Brain Organisation and Interspecies Comparisons: First Data Results package (update on implementation of the DMP - M12)

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4, WP1.5, and WP1.6 Contents: First report including the preliminary list of deliveries for the period M01-M12 including datasets, tools, and models. The results expected to be included are as follows: preliminary datasets generated in the SGA2 on whole brain and four major brain circuits (neocortex, cerebellum, basal ganglia, hippocampus); First draft on the integration of molecular, cellular and functional data (neocortex, cerebellum, basal ganglia, hippocampus) and its application for modelling; Preliminary datasets for the comparative study of cells and microcircuits in the rodent and human brain.

D8.1.1 SP8 MIP - Results for SGA2 Year 1

SP8 MIP - Results for SGA2 period 1 SP8 Summary of Results for M1-12: actual vs. planned results o Risks and Issues log updated o Key Results, Impact status & Exceptional Achievements (from users' perspective) o Dependent results flow (i.e. if/how dependent components were incorporated into the next) o Milestones due and achieved, how validated, by whom o Milestones due but not achieved, why, impact, corrective action o Lessons Learned (and if any incorporated already) o Product Roadmap updated o Platform User feedback on the period o Publications

D11.1.1 Governance handbook

DIR handbook with procedures to follow regarding internal management, interactions with PCO, with SP Leaders and with Advisory Boards. (T11.1.2)

D12.1.1 SP12-SGA2 Foresight Lab & Researchers Awareness background report 2

Original research: Briefing report on Communities and Infrastructure Building. Milestone verified by upload of the report.

D11.2.10 Gender Action Plan

The Gender Action Plan is a required reference document to align structure and processes, objectives and key activities for improved gender equality in HBP with DIR, SIB, GAC, Ethic Board, Education Programme and Subprojects.

D11.1.3 SP11 Management and Coordination – Public Key Results Year 2

Summary of SP11 public Key Results for SGA2 Year 2 (M13-M24)

D10.5.1 SP10 Neurorobotics Platform - Results for SGA2 Year 1

WPs involved: WP10.1, WP10.2, WP10.3, WP10.4 & WP10.5 Summary of SP Results for M1-12, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications o SP Roadmap for SGA3

D12.5.4 SP12 Opinion 3 (Component id: 1967)

SP12's third Opinion on ethical, philosophical and societal issues related to consciousness. (ID: 1967)

D2.2.1 CDP4 Visuo-Motor Integration - Results for SGA2 Year 1

CDP4 Annual compound deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)

D11.3.4 Short Summary of Infrastructure Voucher Programme

Infrastructure Vouchers calls closed; vouchers assigned to the selected users; budget distribution made; short evaluation summary report (T11.3.4, T11.6.1)

D3.3.1 Acquisition of first datasets of electrophysiological recordings of hippocampal cells in VR environment

Release of software code and simulated data (preliminary version) (T3.2.5)

D12.5.1 SGA2-SP12 M12 reporting

Progress report of SP12 for M12 SGA2.

D9.6.1 SP9 Neuromorphic Computing Platform - Results from SGA2 year 1

The summary of SP 9 results for project months M1-12, broken down by task. WPs involved: WP9.1, WP9.2, WP9.3, WP9.4, WP9.5 and WP9.6 In order to report fully, the Deliverable may need to include information that the SP does not wish to make public at the time of the report. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published publicly.

D7.1.1 HPAC Platform Architecture Specification v1

This report will contain a first specification within SGA2 of the HPAC Platform including the Fenix infrastructure.

D6.5.1 SP6 Summary Report on Community Outreach

Summary report of SP6 SGA2 community outreach.

D4.7.1 SP4 Theoretical Neuroscience models - 1st part

Involves all models of work done from all members of the SP4 during the 1st year of SGA2. As there are some models not yet published, there will be a confidential annex for this confidential data that will be only accessible to reviewers, EC and PCO.

D3.6.2 SP3 Systems and Cognitive Neuroscience - Results for SGA2 Year 2

WPs involved: WP3.1, WP3.2., WP3.3, WP3.4, WP3.5, WP3.6 Summary of SP3 Results for M13-24, broken down by Task: o Actual vs. planned results (due & done/due & not done) o Results passed to another Task, WP or SP (due & done/due & not done) o CDP products (due & done/due & not done) o Milestones due and achieved, how validated, by whom. o Milestones due but not achieved, why, impact, corrective action o Publications

D 1.3.1 CDP1 Annual Compound Deliverable Year 1

CDP1 Annual Compound Deliverable Year 1 Overview of Key Results and Impact achieved in M1 to M12, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)

D5.9.1 Strategy and organization of a High-Level Support Team (HLST)

Plan for decision making on the use of resources to achieve the overall goals of the joint platform and organization and coordination of the operations of the HLST.

D4.4.2 CDP7 Results SGA2

This deliverable describes the results of CDP7during SGA2, focusing in particular on novel empirical and computational studies of hierarchical navigational planning in humans and rodents

D2.7.1 SP2 Human Brain Organisation - Results for SGA2 Year 1

WPs involved: WP2.1, WP2.2., WP2.3, WP2.4, WP2.5, WP2.6 & WP2.7 Summary of SP Results for M1-12

D2.5.1 CDP4 Visuo-Motor Integration - Results for SGA2 Year 2

CDP4 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.)

D8.6.2 CDP6 Results SGA2 Year 2 HPC-based chemical optimisation codes increasing ligand specificity toward receptors' subclasses

CDP6 Annual compound deliverable Year 2 Overview of Key Results and Impact achieved in M13 to M24, tailored for presentation to the relevant audiences (research/industry/public) References to HBP/SP/CDP objectives and Use Cases for navigation between multiple Sub-Projects Linkage of Results to components/a set of component fact sheets (lower level information: Component ownership, Technology Readiness level, performed Quality Control checks, etc.) This deliverable will also refer to results for SGA2_HPC-based screening protocols and implementation for accurate HPC-based screening protocols of neuro-drug candidates.

D8.9.2 Curated and tested brain disease ontologies integrated within application services

Brain ontologies are integrated and accessible through OLS-NEURO. All application services (OLS-NEURO, SCAIView-Neuro) are online and available for use in MIP.

D8.7.2 BIDS Apps for imaging data processing pipelines

Applications for the imaging data processing pipelines using the Brain Imaging Data Structure format.

D5.5.1 Reproducible scientific software release 2

This production release will make publicly available JupyterLab functionality optimized and integrated with HBP data management solutions and data service APIs (T5.5.2)

D7.5.1 HPAC Platform including CEA resources

The compute and storage resources of the new HPAC partner CEA are integrated into the HPAC Platform, including the corresponding documentation in the Guidebook. The implementation of a use case workflow is used to demonstrate the functionality and documented in a short report.

D7.4.1 HBP Visualisation Software Catalogue

The HBP Visualisation Catalogue gives an overview of all visualisation tools and methods available in the HBP. It is a publicly available website that is also integrated into the Collaboratory. It contains semantic query functionality to support users in finding the right visualisation method and software for their specific needs.

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Publikacje

An automated home-cage-based 5-choice serial reaction time task for rapid assessment of attention and impulsivity in rats

Autorzy: B. Bruinsma, H. Terra, S. F. de Kloet, A. Luchicchi, A. J. Timmerman, E. Remmelink, M. Loos, Tommy Pattij, Huibert D. Mansvelder
Opublikowane w: Psychopharmacology, 2019, ISSN 0033-3158
DOI: 10.1007/s00213-019-05189-0

Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data

Autorzy: Robin Gutzen, Michael von Papen, Guido Trensch, Pietro Quaglio, Sonja Grün, Michael Denker
Opublikowane w: Frontiers in Neuroinformatics, Issue 12, 2018, ISSN 1662-5196
DOI: 10.3389/fninf.2018.00090

Diattenuation Imaging reveals different brain tissue properties

Autorzy: Miriam Menzel, Markus Axer, Katrin Amunts, Hans De Raedt, Kristel Michielsen
Opublikowane w: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-38506-w

Generalizing age effects on brain structure and cognition: A two-study comparison approach

Autorzy: Christiane Jockwitz, Susan Mérillat, Franziskus Liem, Jessica Oschwald, Katrin Amunts, Svenja Caspers, Lutz Jäncke
Opublikowane w: Human Brain Mapping, Issue 40/8, 2019, Page(s) 2305-2319, ISSN 1065-9471
DOI: 10.1002/hbm.24524

Roles for globus pallidus externa revealed in a computational model of action selection in the basal ganglia

Autorzy: Shreyas M. Suryanarayana, Jeanette Hellgren Kotaleski, Sten Grillner, Kevin N. Gurney
Opublikowane w: Neural Networks, Issue 109, 2019, Page(s) 113-136, ISSN 0893-6080
DOI: 10.1016/j.neunet.2018.10.003

A Fast Solver for Large Tridiagonal Systems on Multi-Core Processors (Lass Library)

Autorzy: Pedro Valero-Lara, Diego Andrade, Raul Sirvent, Jesus Labarta, Basilio B. Fraguela, Ramon Doallo
Opublikowane w: IEEE Access, Issue 7, 2019, Page(s) 23365-23378, ISSN 2169-3536
DOI: 10.1109/access.2019.2900122

Computational geometry for modeling neural populations: From visualization to simulation

Autorzy: Marc de Kamps, Mikkel Lepperød, Yi Ming Lai
Opublikowane w: PLOS Computational Biology, Issue 15/3, 2019, Page(s) e1006729, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006729

Population shrinkage of covariance (PoSCE) for better individual brain functional-connectivity estimation

Autorzy: Mehdi Rahim, Bertrand Thirion, Gaël Varoquaux
Opublikowane w: Medical Image Analysis, Issue 54, 2019, Page(s) 138-148, ISSN 1361-8415
DOI: 10.1016/j.media.2019.03.001

Body Randomization Reduces the Sim-to-Real Gap for Compliant Quadruped Locomotion

Autorzy: Alexander Vandesompele, Gabriel Urbain, Hossain Mahmud, Francis wyffels, Joni Dambre
Opublikowane w: Frontiers in Neurorobotics, Issue 13, 2019, ISSN 1662-5218
DOI: 10.3389/fnbot.2019.00009

Fiber length profiling: A novel approach to structural brain organization

Autorzy: Claude J. Bajada, Jan Schreiber, Svenja Caspers
Opublikowane w: NeuroImage, Issue 186, 2019, Page(s) 164-173, ISSN 1053-8119
DOI: 10.1016/j.neuroimage.2018.10.070

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A Method for the Symbolic Representation of Neurons

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Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0

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Making the Environment an Informative Place: A Conceptual Analysis of Epistemic Policies and Sensorimotor Coordination

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Editorial: Between Theory and Clinic: The Contribution of Neuroimaging in the Field of Consciousness Disorders

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What Can Computational Models Contribute to Neuroimaging Data Analytics?

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Default Mode Network Structural Integrity and Cerebellar Connectivity Predict Information Processing Speed Deficit in Multiple Sclerosis

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Drug Addiction: From Neuroscience to Ethics

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Parkinson's disease: Is it a consequence of human brain evolution?

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A Computational Model of Visual Recognition Memory via Grid Cells

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Large Scale Double-Path Illumination System with Split Field of View for the All-Optical Study of Inter-and Intra-Hemispheric Functional Connectivity on Mice

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Long-Lasting Response Changes in Deep Cerebellar Nuclei in vivo Correlate With Low-Frequency Oscillations

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Hyper-excitability and hyper-plasticity disrupt cerebellar signal transfer in the IB2 KO mouse model of autism

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The Human Brain Project: Responsible Brain Research for the Benefit of Society

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Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data

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Alterations in Schizophrenia-Associated Genes Can Lead to Increased Power in Delta Oscillations

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Complex Dynamics in Simplified Neuronal Models: Reproducing Golgi Cell Electroresponsiveness

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A Cell Atlas for the Mouse Brain

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Efficient region-based test strategy uncovers genetic risk factors for functional outcome in bipolar disorder

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Assessing robustness against potential publication bias in Activation Likelihood Estimation (ALE) meta-analyses for fMRI

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Targeted Nanoswitchable Inhibitors of Protein–Protein Interactions Involved in Apoptosis

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Photoswitchable Antimetabolite for Targeted Photoactivated Chemotherapy

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eQTL of KCNK2 regionally influences the brain sulcal widening: evidence from 15,597 UK Biobank participants with neuroimaging data

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Biocytin Recovery and 3D Reconstructions of Filled Hippocampal CA2 Interneurons

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Memory-Efficient Deep Learning on a SpiNNaker 2 Prototype

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Whole-Brain Vasculature Reconstruction at the Single Capillary Level

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A Quantitative Study on the Distribution of Mitochondria in the Neuropil of the Juvenile Rat Somatosensory Cortex

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Unilateral Botulinum Neurotoxin-A Injection into the Striatum of C57BL/6 Mice Leads to a Different Motor Behavior Compared with Rats

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Behavioral Context Determines Network State and Variability Dynamics in Monkey Motor Cortex

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A Cerebellar Internal Models Control Architecture for Online Sensorimotor Adaptation of a Humanoid Robot Acting in a Dynamic Environment

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Modeling brain dynamics after tumor resection using The Virtual Brain

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A Biomimetic Control Method Increases the Adaptability of a Humanoid Robot Acting in a Dynamic Environment

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Studying the effects of synaptic clustering in silico : when the neighbourhood party gets too loud

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Cytoarchitectonic Characterization and Functional Decoding of Four New Areas in the Human Lateral Orbitofrontal Cortex

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Embodied Synaptic Plasticity With Online Reinforcement Learning

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Stochasticity from function — Why the Bayesian brain may need no noise

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Combining Evolutionary and Adaptive Control Strategies for Quadruped Robotic Locomotion

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A Digital Hardware System for Spiking Network of Tactile Afferents

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QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain

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Odor Stimuli: Not Just Chemical Identity

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Accelerated Physical Emulation of Bayesian Inference in Spiking Neural Networks

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Size, Shape, and Distribution of Multivesicular Bodies in the Juvenile Rat Somatosensory Cortex: A 3D Electron Microscopy Study

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A Metric for Evaluating Neural Input Representation in Supervised Learning Networks

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Two Cultures and Our Encyclopaedic Brain

Autorzy: Jean-Pierre Changeux
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Challenges and Perspectives of Quantitative Functional Sodium Imaging (fNaI)

Autorzy: Claudia A. M. Gandini Wheeler-Kingshott, Frank Riemer, Fulvia Palesi, Antonio Ricciardi, Gloria Castellazzi, Xavier Golay, Ferran Prados, Bhavana Solanky, Egidio U. D’Angelo
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Prominent Changes in Cerebro-Cerebellar Functional Connectivity During Continuous Cognitive Processing

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A Heartbeat Away From Consciousness: Heart Rate Variability Entropy Can Discriminate Disorders of Consciousness and Is Correlated With Resting-State fMRI Brain Connectivity of the Central Autonomic Network

Autorzy: Francesco Riganello, Stephen Karl Larroque, Mohamed Ali Bahri, Lizette Heine, Charlotte Martial, Manon Carrière, Vanessa Charland-Verville, Charlène Aubinet, Audrey Vanhaudenhuyse, Camille Chatelle, Steven Laureys, Carol Di Perri
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Differences in cytoarchitecture of Broca's region between human, ape and macaque brains

Autorzy: Nicola Palomero-Gallagher, Karl Zilles
Opublikowane w: Cortex, 2018, ISSN 0010-9452
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Expansion of the effective action around non-Gaussian theories

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"Body –to-head transplant; a ""caputal"" crime? Examining the corpus of ethical and legal issues"

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Opublikowane w: Philosophy, Ethics, and Humanities in Medicine, Issue 13/1, 2018, ISSN 1747-5341
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Spiking neural networks for computer vision

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Regional brain volumetry and brain function in severely brain-injured patients

Autorzy: Jitka Annen, Gianluca Frasso, Julia Sophia Crone, Lizette Heine, Carol Di Perri, Charlotte Martial, Helena Cassol, Athena Demertzi, Lionel Naccache, Steven Laureys
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Public Safety and National Security Implications of the Horsepox Study

Autorzy: Jennifer Snow, James Giordano
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Multicontact Co-operativity in Spike-Timing–Dependent Structural Plasticity Stabilizes Networks

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Neuroethics: What It Is, Does, and Should Do

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Opublikowane w: Health Care Ethics USA | Spring 2018, 2018, ISSN 1072-5490

Sleep-like slow oscillations improve visual classification through synaptic homeostasis and memory association in a thalamo-cortical model

Autorzy: Cristiano Capone, Elena Pastorelli, Bruno Golosio, Pier Stanislao Paolucci
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Slow Waves Analysis Pipeline for extracting the Features of the Bi-Modality from the Cerebral Cortex of Anesthetized Mice

Autorzy: Giulia De Bonis, Miguel Dasilva, Antonio Pazienti, Maria Victoria Sanchez-Vives, Maurizio Mattia, Pier Stanislao Paolucci
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International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts

Autorzy: Amy Adams, Stephanie Albin, Katrin Amunts, Tasia Asakawa, Amy Bernard, Jan G. Bjaalie, Khaled Chakli, James O. Deshler, Yves De Koninck, Christoph J. Ebell, Gary Egan, Melina E. Hale, Michael Häusser, Sung-Jin Jeong, Judy Illes, Linda Lanyon, Pingping Li, Yan Li, Pierre Magistretti, Agnes McMahon, Caroline Montojo, Toshihisa Ohtsuka, Shigeo Okabe, Hideyuki Okano, Gang Pei, Alexandre Pouget, Jason
Opublikowane w: Neuron, Issue 105/2, 2020, Page(s) 212-216, ISSN 0896-6273
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Cortical reactivations during sleep spindles following declarative learning

Autorzy: Aude Jegou, Manuel Schabus, Olivia Gosseries, Brigitte Dahmen, Geneviève Albouy, Martin Desseilles, Virginie Sterpenich, Christophe Phillips, Pierre Maquet, Christophe Grova, Thien Thanh Dang-Vu
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Mind Reading and Writing: The Future of Neurotechnology

Autorzy: Pieter R. Roelfsema, Damiaan Denys, P. Christiaan Klink
Opublikowane w: Trends in Cognitive Sciences, Issue 22/7, 2018, Page(s) 598-610, ISSN 1364-6613
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Molecular mechanisms underlying striatal synaptic plasticity: relevance to chronic alcohol consumption and seeking

Autorzy: Kim T. Blackwell, Armando G. Salinas, Parul Tewatia, Brad English, Jeanette Hellgren Kotaleski, David M. Lovinger
Opublikowane w: European Journal of Neuroscience, Issue 49/6, 2019, Page(s) 768-783, ISSN 0953-816X
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Internal Coordinate Normal Mode Analysis: A Strategy To Predict Protein Conformational Transitions

Autorzy: Elisa Frezza, Richard Lavery
Opublikowane w: The Journal of Physical Chemistry B, Issue 123/6, 2019, Page(s) 1294-1301, ISSN 1520-6106
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New approaches for computing ligand–receptor binding kinetics

Autorzy: Neil J Bruce, Gaurav K Ganotra, Daria B Kokh, S Kashif Sadiq, Rebecca C Wade
Opublikowane w: Current Opinion in Structural Biology, Issue 49, 2018, Page(s) 1-10, ISSN 0959-440X
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Neuroethics Questions to Guide Ethical Research in the International Brain Initiatives

Autorzy: Karen S. Rommelfanger, Sung-Jin Jeong, Arisa Ema, Tamami Fukushi, Kiyoto Kasai, Khara M. Ramos, Arleen Salles, Ilina Singh, Jordan Amadio, Guo-Qiang Bi, Paul Frederick Boshears, Adrian Carter, Anna Devor, Kenji Doya, Hermann Garden, Judy Illes, L. Syd M. Johnson, Lyric Jorgenson, Bang-Ook Jun, Inyoung Lee, Patricia Michie, Tsuyoshi Miyakawa, Eisuke Nakazawa, Osamu Sakura, Hagop Sarkissian, Laura
Opublikowane w: Neuron, Issue 100/1, 2018, Page(s) 19-36, ISSN 0896-6273
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Neuroethical and Social Implications of Using Transcranial Electrical Stimulation to Augment Creative Cognition

Autorzy: Adam B. Weinberger, Robert A. Cortes, Adam E. Green, James Giordano
Opublikowane w: Creativity Research Journal, Issue 30/3, 2018, Page(s) 249-255, ISSN 1040-0419
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Biological Characteristics of Connection-Wise Resting-State Functional Connectivity Strength

Autorzy: Rory Pijnenburg, Lianne H Scholtens, Dante Mantini, Wim Vanduffel, Lisa Feldman Barrett, Martijn P van den Heuvel
Opublikowane w: Cerebral Cortex, Issue 29/11, 2019, Page(s) 4646-4653, ISSN 1047-3211
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Whole-Brain Multimodal Neuroimaging Model Using Serotonin Receptor Maps Explains Non-linear Functional Effects of LSD

Autorzy: Gustavo Deco, Josephine Cruzat, Joana Cabral, Gitte M. Knudsen, Robin L. Carhart-Harris, Peter C. Whybrow, Nikos K. Logothetis, Morten L. Kringelbach
Opublikowane w: Current Biology, Issue 28/19, 2018, Page(s) 3065-3074.e6, ISSN 0960-9822
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An endogenous explanation of growth: direct-to-consumer stem cell therapies in PR China, India and the USA

Autorzy: Saheli Datta
Opublikowane w: Regenerative Medicine, Issue 13/5, 2018, Page(s) 559-579, ISSN 1746-0751
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The high efficacy of muscarinic M4 receptor in D1 medium spiny neurons reverses striatal hyperdopaminergia

Autorzy: Anu G. Nair, Liliana R.V. Castro, Marianne El Khoury, Victor Gorgievski, Bruno Giros, Eleni T. Tzavara, Jeanette Hellgren-Kotaleski, Pierre Vincent
Opublikowane w: Neuropharmacology, Issue 146, 2019, Page(s) 74-83, ISSN 0028-3908
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Dynamic Redistribution of Plasticity in a Cerebellar Spiking Neural Network Reproducing an Associative Learning Task Perturbed by TMS

Autorzy: Alberto Antonietti, Jessica Monaco, Egidio D'Angelo, Alessandra Pedrocchi, Claudia Casellato
Opublikowane w: International Journal of Neural Systems, Issue 28/09, 2018, Page(s) 1850020, ISSN 0129-0657
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28th Annual Computational Neuroscience Meeting: CNS*2019

Autorzy: Jugoslava Acimovic, Tiina Manninen, Heidi Teppola, Sacha van Albada, Markus Diesmann, Marja-Leena Linne
Opublikowane w: BMC Neuroscience, Issue 20/S1, 2019, ISSN 1471-2202
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Attractor competition enriches cortical dynamics during awakening from anesthesia

Autorzy: Núria Tort-Colet, Cristiano Capone, Maria V. Sanchez-Vives, Maurizio Mattia
Opublikowane w: BioRxiv, 2019, ISSN 0000-0000
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A new view of dorsal visual cortex in macaques revealed by submillimeter fMRI

Autorzy: Qi Zhu, Wim Vanduffel
Opublikowane w: bioRxiv, 2019, ISSN 0000-0000
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Computational Models of Astrocytes and Astrocyte–Neuron Interactions: Characterization, Reproducibility, and Future Perspectives

Autorzy: Tiina Manninen, Riikka Havela, Marja-Leena Linne
Opublikowane w: Computational Glioscience, 2019, Page(s) 423-454
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A Brain-Inspired Cognitive System that Mimics the Dynamics of Human Thought

Autorzy: Yuehu Ji, David Gamez, Christian Huyck
Opublikowane w: Artificial Intelligence XXXV - 38th SGAI International Conference on Artificial Intelligence, AI 2018, Cambridge, UK, December 11–13, 2018, Proceedings, Issue 11311, 2018, Page(s) 50-62
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Extending Redescription Mining to Multiple Views

Autorzy: Matej Mihelčić, Sašo Džeroski, Tomislav Šmuc
Opublikowane w: Discovery Science - 21st International Conference, DS 2018, Limassol, Cyprus, October 29–31, 2018, Proceedings, Issue 11198, 2018, Page(s) 292-307
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Improving Cytoarchitectonic Segmentation of Human Brain Areas with Self-supervised Siamese Networks

Autorzy: Hannah Spitzer, Kai Kiwitz, Katrin Amunts, Stefan Harmeling, Timo Dickscheid
Opublikowane w: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part III, Issue 11072, 2018, Page(s) 663-671
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Learning Continuous Muscle Control for a Multi-joint Arm by Extending Proximal Policy Optimization with a Liquid State Machine

Autorzy: Juan Camilo Vasquez Tieck, Marin Vlastelica Pogančić, Jacques Kaiser, Arne Roennau, Marc-Oliver Gewaltig, Rüdiger Dillmann
Opublikowane w: Artificial Neural Networks and Machine Learning – ICANN 2018 - 27th International Conference on Artificial Neural Networks, Rhodes, Greece, October 4-7, 2018, Proceedings, Part I, Issue 11139, 2018, Page(s) 211-221
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Microsaccades for Neuromorphic Stereo Vision

Autorzy: Jacques Kaiser, Jakob Weinland, Philip Keller, Lea Steffen, J. Camilo Vasquez Tieck, Daniel Reichard, Arne Roennau, Jörg Conradt, Rüdiger Dillmann
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The Synthetic Psychology of the Self

Autorzy: Tony J. Prescott, Daniel Camilleri
Opublikowane w: Cognitive Architectures, Issue 94, 2019, Page(s) 85-104
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A Deep Predictive Coding Network for Inferring Hierarchical Causes Underlying Sensory Inputs

Autorzy: Shirin Dora, Cyriel Pennartz, Sander Bohte
Opublikowane w: Artificial Neural Networks and Machine Learning – ICANN 2018 - 27th International Conference on Artificial Neural Networks, Rhodes, Greece, October 4-7, 2018, Proceedings, Part III, Issue 11141, 2018, Page(s) 457-467
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Calibration Method to Improve Transfer from Simulation to Quadruped Robots

Autorzy: Gabriel Urbain, Alexander Vandesompele, Francis Wyffels, Joni Dambre
Opublikowane w: From Animals to Animats 15 - 15th International Conference on Simulation of Adaptive Behavior, SAB 2018, Frankfurt/Main, Germany, August 14-17, 2018, Proceedings, Issue 10994, 2018, Page(s) 102-113
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Understanding Interstate Competitiveness and International Security in European Dual-Use Research

Autorzy: Saheli Datta Burton, Christine Aicardi, Tara Mahfoud, Nikolas Rose
Opublikowane w: Biomimetic and Biohybrid Systems, Issue 10928, 2018, Page(s) 129-133
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Whisker-RatSLAM Applied to 6D Object Identification and Spatial Localisation

Autorzy: Mohammed Salman, Martin J. Pearson
Opublikowane w: Biomimetic and Biohybrid Systems, Issue 10928, 2018, Page(s) 403-414
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Unraveling Brain Modularity Through Slow Oscillations

Autorzy: Maurizio Mattia, Maria V. Sanchez-Vives
Opublikowane w: Nonlinear Dynamics in Computational Neuroscience, 2019, Page(s) 17-31
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Streaming Live Neuronal Simulation Data into Visualization and Analysis

Autorzy: Simon Oehrl, Jan Müller, Jan Schnathmeier, Jochen Martin Eppler, Alexander Peyser, Hans Ekkehard Plesser, Benjamin Weyers, Bernd Hentschel, Torsten W. Kuhlen, Tom Vierjahn
Opublikowane w: High Performance Computing - ISC High Performance 2018 International Workshops, Frankfurt/Main, Germany, June 28, 2018, Revised Selected Papers, Issue 11203, 2018, Page(s) 258-272
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Local Optimal Transport for Functional Brain Template Estimation

Autorzy: T. Bazeille, H. Richard, H. Janati, B. Thirion
Opublikowane w: Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019, Proceedings, Issue 11492, 2019, Page(s) 237-248
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Evaluating the Benefits of Key-Value Databases for Scientific Applications

Autorzy: Pol Santamaria, Lena Oden, Eloy Gil, Yolanda Becerra, Raül Sirvent, Philipp Glock, Jordi Torres
Opublikowane w: Computational Science – ICCS 2019 - 19th International Conference, Faro, Portugal, June 12–14, 2019, Proceedings, Part I, Issue 11536, 2019, Page(s) 412-426
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Brain-Inspired Hardware for Artificial Intelligence: Accelerated Learning in a Physical-Model Spiking Neural Network

Autorzy: Timo Wunderlich, Akos F. Kungl, Eric Müller, Johannes Schemmel, Mihai Petrovici
Opublikowane w: Artificial Neural Networks and Machine Learning – ICANN 2019: Theoretical Neural Computation - 28th International Conference on Artificial Neural Networks, Munich, Germany, September 17–19, 2019, Proceedings, Part I, Issue 11727, 2019, Page(s) 119-122
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Constraint Exploration of Convolutional Network Architectures with Neuroevolution

Autorzy: Jonas Dominik Homburg, Michael Adams, Michael Thies, Timo Korthals, Marc Hesse, Ulrich Rückert
Opublikowane w: Advances in Computational Intelligence - 15th International Work-Conference on Artificial Neural Networks, IWANN 2019, Gran Canaria, Spain, June 12-14, 2019, Proceedings, Part II, Issue 11507, 2019, Page(s) 735-746
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Closed Loop Control of a Compliant Quadruped with Spiking Neural Networks

Autorzy: Alexander Vandesompele, Gabriel Urbain, Francis Wyffels, Joni Dambre
Opublikowane w: Biologically Inspired Cognitive Architectures 2019 - Proceedings of the Tenth Annual Meeting of the BICA Society, Issue 948, 2020, Page(s) 547-555
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Efficient Construction of Geometric Nerve Fiber Models for Simulation with 3D-PLI

Autorzy: Jan A. Reuter, Felix Matuschke, Nicole Schubert, Markus Axer
Opublikowane w: Bildverarbeitung für die Medizin 2019 - Algorithmen – Systeme – Anwendungen. Proceedings des Workshops vom 17. bis 19. März 2019 in Lübeck, 2019, Page(s) 333-338
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Towards 3D Reconstruction of Neuronal Cell Distributions from Histological Human Brain Sections

Autorzy: Timo Dickscheid, Sarah Haas, Sebastian Bludau, Philipp Glock, Marcel Huysegoms, Katrin Amunts
Opublikowane w: 2019
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Real-Time Cortical Simulations: Energy and Interconnect Scaling on Distributed Systems

Autorzy: Francesco Simula, Elena Pastorelli, Pier Stanislao Paolucci, Michele Martinelli, Alessandro Lonardo, Andrea Biagioni, Cristiano Capone, Fabrizio Capuani, Paolo Cretaro, Giulia De Bonis, Francesca Lo Cicero, Luca Pontisso, Piero Vicini, Roberto Ammendola
Opublikowane w: 2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 283-290
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Arbor — A Morphologically-Detailed Neural Network Simulation Library for Contemporary High-Performance Computing Architectures

Autorzy: Nora Abi Akar, Ben Cumming, Vasileios Karakasis, Anne Kusters, Wouter Klijn, Alexander Peyser, Stuart Yates
Opublikowane w: 2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 274-282
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IO Challenges for Human Brain Atlasing Using Deep Learning Methods - An In-Depth Analysis

Autorzy: Lena Oden, Christian Schiffer, Hannah Spitzer, Timo Dickscheid, Dirk Pleiter
Opublikowane w: 2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2019, Page(s) 291-298
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Exploring Vestibulo-Ocular Adaptation in a Closed-Loop Neuro-Robotic Experiment Using STDP. A Simulation Study

Autorzy: Francisco Naveros, Jesus A. Garrido, Angelo Arleo, Eduardo Ros, Niceto R. Luque
Opublikowane w: 2018 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2018, Page(s) 1-9
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DROM - Enabling Efficient and Effortless Malleability for Resource Managers

Autorzy: Marco D'Amico, Marta Garcia-Gasulla, Víctor López, Ana Jokanovic, Raül Sirvent, Julita Corbalan
Opublikowane w: Proceedings of the 47th International Conference on Parallel Processing Companion - ICPP '18, 2018, Page(s) 1-10
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Multi-Modal Motion Activation for Robot Control Using Spiking Neurons

Autorzy: J. Camilo Vasquez Tieck, Lea Steffen, Jacques Kaiser, Arne Roennau, Rudiger Dillmann
Opublikowane w: 2018 7th IEEE International Conference on Biomedical Robotics and Biomechatronics (Biorob), 2018, Page(s) 291-298
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MPI+OpenMP Tasking Scalability for the Simulation of the Human Brain - Human Brain Project

Autorzy: Pedro Valero-Lara, Raül Sirvent, Antonio J. Peña, Xavier Martorell, Jesús Labarta
Opublikowane w: Proceedings of the 25th European MPI Users' Group Meeting on - EuroMPI'18, 2018, Page(s) 1-8
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Learning to Reproduce Visually Similar Movements by Minimizing Event-Based Prediction Error

Autorzy: Jacques Kaiser, Svenja Melbaum, J. Camilo Vasquez Tieck, Arne Roennau, Martin V. Butz, Rudiger Dillmann
Opublikowane w: 2018 7th IEEE International Conference on Biomedical Robotics and Biomechatronics (Biorob), 2018, Page(s) 260-267
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Efficient Fault Tolerance Through Dynamic Node Replacement

Autorzy: Suraj Prabhakaran, Marcel Neumann, Felix Wolf
Opublikowane w: 2018 18th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 2018, Page(s) 163-172
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Controlling a Robot Arm for Target Reaching without Planning Using Spiking Neurons

Autorzy: J. Camilo Vasquez Tieck, Lea Steffen, Jacques Kaiser, Arne Roennau, Rudiger Dillmann
Opublikowane w: 2018 IEEE 17th International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC), 2018, Page(s) 111-116
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Network-on-chip evaluation for a novel neural architecture

Autorzy: Markos Kynigos, Javier Navaridas, Luis A. Plana, Steve Furber
Opublikowane w: Proceedings of the 15th ACM International Conference on Computing Frontiers - CF '18, 2018, Page(s) 216-219
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Approximate Fixed-Point Elementary Function Accelerator for the SpiNNaker-2 Neuromorphic Chip

Autorzy: Mantas Mikaitis, David R Lester, Delong Shang, Steve Furber, Gengting Liu, Jim Garside, Stefan Scholze, Sebastian Hoppner, Andreas Dixius
Opublikowane w: 2018 IEEE 25th Symposium on Computer Arithmetic (ARITH), 2018, Page(s) 37-44
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Benchmarking and Characterization of event-based Neuromorphic Hardware

Autorzy: Christoph Ostrau, Christian Klarhorst, Michael Thies, Ulrich Rückert
Opublikowane w: FastPath 2019 - Sixth International Workshop on Performance Analysis of Machine Learning Systems, 2019

Tailoring SVM Inference for Resource-Efficient ECG-Based Epilepsy Monitors

Autorzy: Lorenzo Ferretti, Giovanni Ansaloni, Laura Pozzi, Amir Aminifar, David Atienza, Leila Cammoun, Philippe Ryvlin
Opublikowane w: 2019 Design, Automation & Test in Europe Conference & Exhibition (DATE), 2019, Page(s) 948-951
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A Self-Learning Methodology for Epileptic Seizure Detection with Minimally-Supervised Edge Labeling

Autorzy: Damian Pascual, Amir Aminifar, David Atienza
Opublikowane w: 2019 Design, Automation & Test in Europe Conference & Exhibition (DATE), 2019, Page(s) 764-769
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Integrating clinical data from hospital databases

Autorzy: Kostis Karozos, Iosif Spartalis, Artem Tsikiridis, Despoina Trivela, Vasilis Vassalos
Opublikowane w: http://ceur-ws.org, Issue Vol-2164, 2018, ISSN 1613-0073

Long short-term memory and learning-to-learn in networks of spiking neurons

Autorzy: Guillaume Bellec, Darjan Salaj, Anand Subramoney, Robert Legenstein, Wolfgang Maass
Opublikowane w: NIPS 2018, 2018

Work-in-Progress: Impact of Graph Partitioning on SNN Placement for a Multi-Core Neuromorphic Architecture

Autorzy: Francesco Barchi, Gianvito Urgese, Enrico Macii, Andrea Acquaviva
Opublikowane w: 2018 International Conference on Compilers, Architectures and Synthesis for Embedded Systems (CASES), 2018, Page(s) 1-2
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Work-in-Progress: Multiple Alignment of Packet Sequences for Efficient Communication in a Many-Core Neuromorphic System

Autorzy: Gianvito Urgese, Luca Peres, Francesco Barchi, Enrico Macii, Andrea Acquaviva
Opublikowane w: 2018 International Conference on Compilers, Architectures and Synthesis for Embedded Systems (CASES), 2018, Page(s) 1-2
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Two Simple NeuroCognitive Associative Memory Models

Autorzy: Christian R. Huyck, Yuhue Ji
Opublikowane w: Proceedings of the 16th International Conference on Cognitive Modeling (ICCM 2018), 2018, Page(s) 31-36

Non-Linear Motor Control by Local Learning in Spiking Neural Networks

Autorzy: Aditya Gilra and Wulfram Gerstner
Opublikowane w: PMLR, 2018, ISSN 2640-3498

Deep Rewiring: Training Very Sparse Deep Networks

Autorzy: Guillaume Bellec, David Kappel, Wolfgang Maass, Robert Legenstein
Opublikowane w: ICLR 2018, 2018

Pattern recognition using latency coding in multilayer spiking neural networks

Autorzy: Brian Gardner, André Grüning
Opublikowane w: Bernstein Conference 2018, 2018
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Efficient Job Scheduling for Clusters with Shared Tiered Storage

Autorzy: Leah E. Lackner, Hamid Mohammadi Fard, Felix Wolf
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Efficient Query Processing for Spatial and Temporal Data Exploration

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Electrophysiological Markers of Consciousness: Measures of connectivity, complexity, and signal diversity in EEG for distinguishing between conscious and unconscious brain states

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Control of Cardiac Function in vivo with a Light-Regulated Drug

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Self-consistent formulations for stochastic nonlinear neuronal dynamics

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Dendritic cortical microcircuits approximate the backpropagation algorithm

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Contextual Encoder-Decoder Network for Visual Saliency Prediction

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Sizing the length of complex networks

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Improving Spatial Data Processing by Clipping Minimum Bounding Boxes

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Biologically inspired alternatives to backpropagation through time for learning in recurrent neural nets

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Reconciliation of weak pairwise spike-train correlations and highly co- herent local field potentials across space

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A model for structured information representation in neural networks

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Vorbild Natur. Wie Maschinen das Lernen lernen

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