A Google Earth Approach to Understanding Collagen Mineralization

Project Information

COLMIN

Grant agreement ID: 788982

DOI

10.3030/788982

Project closed

EC signature date 24 May 2018

Start date 1 January 2019

End date 30 April 2025

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 3 498 006,25

EU contribution

€ 3 498 006,00

Coordinated by

STICHTING RADBOUD UNIVERSITAIR MEDISCH CENTRUM
Netherlands

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Thesis and dissertations (1)

Unravelling the Role of Glycosylation on the Mineralization of Collagen Type I - Model Systems and Advanced Transmission Electron Microscopy

Author(s): Rutten, L.J.
Published in: Issue 1, 2024, ISBN 978-94-6473-655-6
Publisher: Luco Rutten

Peer reviewed articles (17)

A Cryo‐to‐Liquid Phase Correlative Light Electron Microscopy Workflow for the Visualization of Biological Processes in Graphene Liquid Cells

Author(s): Luco Rutten, Ben Joosten, Judith Schaart, Marit de Beer, Rona Roverts, Steffen Gräber, Willi Jahnen‐Dechent, Anat Akiva, Elena Macías‐Sánchez, Nico Sommerdijk
Published in: Advanced Functional Materials, Issue 35, 2025, ISSN 1616-301X
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/adfm.202416938

Involvement of ceramide biosynthesis in increased extracellular vesicle release in Pkd1 knock out cells

Author(s): Valentina Carotti, Jenny van der Wijst, Eric H. J. Verschuren, Luco Rutten, Nico Sommerdijk, Charlotte Kaffa, Vera Sommers, Juan P. Rigalli, Joost G. J. Hoenderop
Published in: Frontiers in Endocrinology, Issue 13, 2022, ISSN 1664-2392
Publisher: Frontiers Media SA
DOI: 10.3389/fendo.2022.1005639

Bioinspired Silk Fibroin Mineralization for Advanced In Vitro Bone Remodeling Models

Author(s): Bregje W. M. de Wildt,Robin van der Meijden,Paul A. A. Bartels,Nico A. J. M. Sommerdijk,Anat Akiva,Keita Ito,Sandra Hofmann
Published in: ADVANCED FUNCTIONAL MATERIALS, Issue 1616301X, 2022, ISSN 1616-301X
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/adfm.202206992

On the role of the glycosylation of type I collagen in bone

Author(s): Luco Rutten, Elena Macías-Sánchez, Nico Sommerdijk
Published in: Journal of Structural Biology, Issue 216, 2025, Page(s) 108145, ISSN 1047-8477
Publisher: Academic Press
DOI: 10.1016/j.jsb.2024.108145

Precise targeting for 3D cryo-correlative light and electron microscopy volume imaging of tissues using a FinderTOP

Author(s): Marit de Beer, Deniz Daviran, Rona Roverts, Luco Rutten, Elena Macías-Sánchez, Juriaan R. Metz, Nico Sommerdijk, Anat Akiva
Published in: Communications Biology, Issue 6, 2023, ISSN 2399-3642
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/s42003-023-04887-y

Comparative 3D ultrastructure of Plasmodium falciparum gametocytes

Author(s): Felix Evers, Rona Roverts, Cas Boshoven, Mariska Kea-te Lindert, Julie M. J. Verhoef, Nico Sommerdijk, Robert E. Sinden, Anat Akiva, Taco W. A. Kooij
Published in: Nature Communications, Issue 16, 2025, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-024-55413-5

Cell-induced collagen alignment in a 3D in vitro culture during extracellular matrix production

Author(s): Judith M. Schaart, Mariska Kea-te Lindert, Rona Roverts, Wouter H. Nijhuis, Nico Sommerdijk, Anat Akiva
Published in: Journal of Structural Biology, Issue 216, 2024, Page(s) 108096, ISSN 1047-8477
Publisher: Academic Press
DOI: 10.1016/j.jsb.2024.108096

Intermolecular channels direct crystal orientation in mineralized collagen

Author(s): YiFei Xu, Fabio Nudelman, E. Deniz Eren, Maarten J. M. Wirix, Bram Cantaert, Wouter H. Nijhuis, Daniel Hermida-Merino, Giuseppe Portale, Paul H. H. Bomans, Christian Ottmann, Heiner Friedrich, Wim Bras, Anat Akiva, Joseph P. R. O. Orgel, Fiona C. Meldrum, Nico Sommerdijk
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-18846-2

Correlative Raman spectroscopy and electron microscopy identifies glycogen rich deposits correlated with local structural defects in long bones of type IV osteogenesis imperfecta patients

Author(s): R.H.M. Van der Meijden, M.H. Scholten, W.H. Nijhuis, R.J.B. Sakkers, N. Sommerdijk, A. Akiva
Published in: Journal of Structural Biology, Issue 216, 2025, Page(s) 108142, ISSN 1047-8477
Publisher: Academic Press
DOI: 10.1016/j.jsb.2024.108142

Visualizing Biological Tissues: A Multiscale Workflow from Live Imaging to 3D Cryo-CLEM

Author(s): Marit de Beer, Rona Roverts, Xavier Heiligenstein, Edwin Lamers, Nico Sommerdijk, Anat Akiva
Published in: Microscopy and Microanalysis, Issue 27, 2023, Page(s) 11-12, ISSN 1431-9276
Publisher: Cambridge University Press
DOI: 10.1017/s1431927621013635

An Organoid for Woven Bone

Author(s): Anat Akiva, Johanna Melke, Sana Ansari, Nalan Liv, Robin Meijden, Merijn Erp, Feihu Zhao, Merula Stout, Wouter H. Nijhuis, Cilia Heus, Claudia Muñiz Ortera, Job Fermie, Judith Klumperman, Keita Ito, Nico Sommerdijk, Sandra Hofmann
Published in: Advanced Functional Materials, 2021, Page(s) 2010524, ISSN 1616-301X
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/adfm.202010524

Imatinib attenuates reperfusion injury in a rat model of acute myocardial infarction

Author(s): Lara S. F. Konijnenberg, Tom T. J. Luiken, Andor Veltien, Laween Uthman, Carolien T. A. Kuster, Laura Rodwell, Guus A. de Waard, Mariska Kea-te Lindert, Anat Akiva, Dick H. J. Thijssen, Robin Nijveldt, Niels van Royen
Published in: Basic Research in Cardiology, Issue 118, 2023, ISSN 1435-1803
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/s00395-022-00974-z

Human pluripotent stem cell-derived kidney organoids for personalized congenital and idiopathic nephrotic syndrome modeling

Author(s): Jitske Jansen, Bartholomeus T. van den Berge, Martijn van den Broek, Rutger J. Maas, Deniz Daviran, Brigith Willemsen, Rona Roverts, Marit van der Kruit, Christoph Kuppe, Katharina C. Reimer, Gianluca Di Giovanni, Fieke Mooren, Quincy Nlandu, Helmer Mudde, Roy Wetzels, Dirk den Braanker, Naomi Parr, James S. Nagai, Vedran Drenic, Ivan G. Costa, Eric Steenbergen, Tom Nijenhuis, Henry Dijkman, Nicol
Published in: Development, Issue 149, 2022, ISSN 0950-1991
Publisher: The Company of Biologists Ltd.
DOI: 10.1242/dev.200198

Endocytosis-like DNA uptake by cell wall-deficient bacteria

Author(s): Renée Kapteijn, Shraddha Shitut, Dennis Aschmann, Le Zhang, Marit de Beer, Deniz Daviran, Rona Roverts, Anat Akiva, Gilles P. van Wezel, Alexander Kros, Dennis Claessen
Published in: Nature Communications, Issue 13, 2022, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-022-33054-w

From bone regeneration to three-dimensional in vitro models: tissue engineering of organized bone extracellular matrix

Author(s): Bregje W.M. de Wildt, Sana Ansari, Nico A.J.M. Sommerdijk, Keita Ito, Anat Akiva, Sandra Hofmann
Published in: Current Opinion in Biomedical Engineering, Issue 10, 2019, Page(s) 107-115, ISSN 2468-4511
Publisher: Elsevier BV
DOI: 10.1016/j.cobme.2019.05.005

A 3D Cell‐Free Bone Model Shows Collagen Mineralization is Driven and Controlled by the Matrix

Author(s): Robin H.M. van der Meijden, Deniz Daviran, Luco Rutten, X. Frank Walboomers, Elena Macías‐Sánchez, Nico Sommerdijk, Anat Akiva
Published in: Advanced Functional Materials, Issue 33, 2023, ISSN 1616-301X
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/adfm.202212339

SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids

Author(s): Jitske Jansen; Katharina C. Reimer; James S. Nagai; Finny S. Varghese; Gijs J. Overheul; Marit de Beer; Rona Roverts; Deniz Daviran; Liline A.S. Fermin; Brigith Willemsen; Marcel Beukenboom; Sonja Djudjaj; Saskia von Stillfried; Larissa E. van Eijk; Mirjam Mastik; Marian Bulthuis; Wilfred den Dunnen; Harry van Goor; Jan-Luuk Hillebrands; Sergio H. Triana; Theodore Alexandrov; Marie-Cherelle Timm;
Published in: CELL STEM CELL, Issue 19345909, 2021, ISSN 1934-5909
Publisher: Cell Press
DOI: 10.1016/j.stem.2021.12.010

Book chapters (1)

HPM live μ for a full CLEM workflow

Author(s): Xavier Heiligenstein, Marit de Beer, Jérôme Heiligenstein, Frédérique Eyraud, Laurent Manet, Fabrice Schmitt, Edwin Lamers, Joerg Lindenau, Mariska Kea-te Lindert, Jean Salamero, Graça Raposo, Nico Sommerdijk, Martin Belle, Anat Akiva
Published in: Correlative Light and Electron Microscopy IV, Issue 162, 2021, Page(s) 115-149, ISBN 9780128220580
Publisher: Elsevier
DOI: 10.1016/bs.mcb.2020.10.022