Five-Dimensional Localization Microscopy for Sub-Cellular Dynamics

Información del proyecto

5D-NanoTrack

Identificador del acuerdo de subvención: 802567

DOI

10.3030/802567

Proyecto cerrado

Fecha de la firma de la CE 2 Octubre 2018

Fecha de inicio 1 Noviembre 2018

Fecha de finalización 30 Abril 2024

Financiado con arreglo a

• EXCELLENT SCIENCE - European Research Council (ERC)

Coste total

€ 1 802 500,00

Aportación de la UE

€ 1 802 500,00

Coordinado por

TECHNION - ISRAEL INSTITUTE OF TECHNOLOGY
Israel

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Publicaciones

Peer reviewed articles (21)

All-in-focus large-FOV GRIN lens imaging by multi-focus image fusion

Autores: Dafei Xiao, Zhige Lin, and Yoav Shechtman
Publicado en: Optics Continuum, 2023, ISSN 2770-0208
Editor: Optics continuum
DOI: 10.1364/optcon.500503

Automated Analysis of Fluorescence Kinetics in Single-Molecule Localization Microscopy Data Reveals Protein Stoichiometry

Autores: Alon Saguy, Tim N. Baldering, Lucien E. Weiss, Elias Nehme, Christos Karathanasis, Marina S. Dietz, Mike Heilemann, Yoav Shechtman
Publicado en: The Journal of Physical Chemistry B, 2021, ISSN 1520-5207
Editor: American Chemical Society
DOI: 10.1021/acs.jpcb.1c01130

DeepOM: single-molecule optical genome mapping via deep learning

Autores: Yevgeni Nogin, Tahir Detinis Zur, Sapir Margalit, Ilana Barzilai, Onit Alalouf, Yuval Ebenstein, Yoav Shechtman
Publicado en: Bioinformatics, 2023, ISSN 1367-4811
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btad137

3D printable diffractive optical elements by liquid immersion

Autores: Reut Orange-Kedem, Elias Nehme, Lucien E. Weiss, Boris Ferdman, Onit Alalouf, Nadav Opatovski, Yoav Shechtman
Publicado en: Nature Communications, Edición 12/1, 2021, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-021-23279-6

OM2Seq: Learning retrieval embeddings for optical genome mapping

Autores: Yevgeni Nogin, Danielle Sapir, Tahir Detinis Zur, Nir Weinberger, Yonatan Belinkov, Yuval Ebenstein, Yoav Shechtman
Publicado en: Bioinformatics Advances, 2024, ISSN 2635-0041
Editor: Oxford University Press
DOI: 10.1093/bioadv/vbae079

Multiplexed PSF Engineering for Three-Dimensional Multicolor Particle Tracking

Autores: Nadav Opatovski, Yael Shalev Ezra, Lucien E. Weiss, Boris Ferdman, Reut Orange-Kedem, and Yoav Shechtman
Publicado en: Nano Letters, 2021, ISSN 1530-6992
Editor: American Chemical Society
DOI: 10.1021/acs.nanolett.1c02068

Learning optimal wavefront shaping for multi-channel imaging

Autores: Elias Nehme, Boris Ferdman, Lucien Weiss, Tal Naor, Daniel Freedman, Tomer Michaeli, Yoav Shechtman
Publicado en: IEEE Transactions on Pattern Analysis and Machine Intelligence, Edición vol. 43, no. 7, pp. 2179-2192, 2021, Página(s) 1-1, ISSN 0162-8828
Editor: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tpami.2021.3076873

Deep-ROCS: from speckle patterns to superior-resolved images by deep learning in rotating coherent scattering microscopy

Autores: Alon Saguy, Felix Jünger, Aviv Peleg, Boris Ferdman, Elias Nehme, Alexander Rohrbach, and Yoav Shechtman
Publicado en: Optics Express, 2021, ISSN 1094-4087
Editor: Optical Society of America
DOI: 10.1364/oe.424730

Microscopic scan-free surface profiling over extended axial ranges by point-spread-function engineering

Autores: Racheli Gordon-Soffer, Lucien E. Weiss, Ran Eshel, Boris Ferdman, Elias Nehme, Moran Bercovici, Yoav Shechtman
Publicado en: Science Advances, Edición 6/44, 2020, Página(s) eabc0332, ISSN 2375-2548
Editor: science advances
DOI: 10.1126/sciadv.abc0332

Design of optimal labeling patterns for optical genome mapping via information theory

Autores: Yevgeni Nogin, Daniella Bar-Lev, Dganit Hanania, Tahir Detinis Zur, Yuval Ebenstein, Eitan Yaakobi, Nir Weinberger, Yoav Shechtman
Publicado en: Bioinformatics, 2023, ISSN 1367-4811
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btad601

Diffractive optical system design by cascaded propagation

Autores: Ferdman, Boris; Saguy, Alon; Alalouf, Onit; Shechtman, Yoav
Publicado en: Optics Express, Edición 3, 2022, ISSN 1094-4087
Editor: Optical Society of America
DOI: 10.1364/oe.465230

Monocular kilometer-scale passive ranging by point-spread function engineering

Autores: Nadav Opatovski, Dafei Xiao, Gal Harari, Yoav Shechtman
Publicado en: Optics Express, 2022, ISSN 1094-4087
Editor: Optical Society of America
DOI: 10.1364/oe.472150

Multicolor localization microscopy and point-spread-function engineering by deep learning

Autores: Eran Hershko, Lucien E. Weiss, Tomer Michaeli, Yoav Shechtman
Publicado en: Optics Express, Edición 27/5, 2019, Página(s) 6158, ISSN 1094-4087
Editor: Optical Society of America
DOI: 10.1364/oe.27.006158

DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning

Autores: Elias Nehme, Daniel Freedman, Racheli Gordon, Boris Ferdman, Lucien E. Weiss, Onit Alalouf, Tal Naor, Reut Orange, Tomer Michaeli, Yoav Shechtman
Publicado en: Nature Methods, 2020, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1038/s41592-020-0853-5

Three-dimensional localization microscopy in live flowing cells

Autores: Lucien E. Weiss, Yael Shalev Ezra, Sarah Goldberg, Boris Ferdman, Omer Adir, Avi Schroeder, Onit Alalouf, Yoav Shechtman
Publicado en: Nature Nanotechnology, Edición 15/6, 2020, Página(s) 500-506, ISSN 1748-3387
Editor: Nature Publishing Group
DOI: 10.1038/s41565-020-0662-0

VIPR: vectorial implementation of phase retrieval for fast and accurate microscopic pixel-wise pupil estimation

Autores: Boris Ferdman, Elias Nehme, Lucien E. Weiss, Reut Orange, Onit Alalouf, Yoav Shechtman
Publicado en: Optics Express, Edición 28/7, 2020, Página(s) 10179, ISSN 1094-4087
Editor: Optical Society of America
DOI: 10.1364/oe.388248

Quantifying cell cycle dependent chromatin dynamics during interphase by live 3D tracking

Autores: Tal Naor ,Yevgeni Nogin , Elias Nehme , Boris Ferdman, Lucien E. Weiss, Onit Alalouf, Yoav Shechtman
Publicado en: iScience, 2022, ISSN 2589-0042
Editor: [Cambridge MA]: Cell Press Elsevier Inc.
DOI: 10.1016/j.isci.2022.104197

Near index matching enables solid diffractive optical element fabrication via additive manufacturing

Autores: Reut Orange kedem; Nadav Opatovski; Dafei Xiao; Boris Ferdman; Onit Alalouf; Sushanta Kumar Pal; Ziyun Wang; Henrik von der Emde; Michael Weber; Steffen J. Sahl; Aleks Ponjavic; Ady Arie; Stefan W. Hell; Yoav Shechtman
Publicado en: Light: Science & Applications, Edición 12, 2023, ISSN 2047-7538
Editor: Light: Science & Applications
DOI: 10.1038/s41377-023-01277-1

Large-FOV 3D localization microscopy by spatially variant point spread function generation

Autores: Dafei Xiao, Reut Kedem Orange, Nadav Opatovski, Amit Parizat, Elias Nehme, Onit Alalouf, Yoav Shechtman
Publicado en: Science Advances, 2024, ISSN 2375-2548
Editor: Science Advances
DOI: 10.1126/sciadv.adj3656

DBlink: Dynamic localization microscopy in super spatiotemporal resolution via deep learning

Autores: Alon Saguy; Onit Alalouf; Nadav Opatovski; Sooyhen Jang; Mike Heilemann; Yoav Shechtman
Publicado en: Nature Methods, Edición 8, 2023, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1101/2022.07.01.498428

Depth-enhanced high-throughput microscopy by compact PSF engineering

Autores: Nadav Opatovski, Elias Nehme, Noam Zoref, Ilana Barzilai, Reut Orange Kedem, Boris Ferdman, Paul Keselman, Onit Alalouf, Yoav Shechtman
Publicado en: Nature communications, 2024, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-024-48502-y

Other (1)

This microtubule does not exist: Super-resolution microscopy image generation by a diffusion model

Autores: Alon Saguy, Tav Nahimov, Maia Lehrman, Estibaliz Gómez-de-Mariscal, Iván Hidalgo-Cenalmor, Onit Alalouf, Ricardo Henriques,Yoav Shechtman
Publicado en: NO JOURNAL TITLE, 2024
Editor: bioRxiv
DOI: 10.1101/2023.07.06.548004