Five-Dimensional Localization Microscopy for Sub-Cellular Dynamics

Informazioni relative al progetto

5D-NanoTrack

ID dell’accordo di sovvenzione: 802567

DOI

10.3030/802567

Progetto chiuso

Data della firma CE 2 Ottobre 2018

Data di avvio 1 Novembre 2018

Data di completamento 30 Aprile 2024

Finanziato da

• EXCELLENT SCIENCE - European Research Council (ERC)

Costo totale

€ 1 802 500,00

Contributo UE

€ 1 802 500,00

Coordinato da

TECHNION - ISRAEL INSTITUTE OF TECHNOLOGY
Israel

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Pubblicazioni

Peer reviewed articles (21)

All-in-focus large-FOV GRIN lens imaging by multi-focus image fusion

Autori: Dafei Xiao, Zhige Lin, and Yoav Shechtman
Pubblicato in: Optics Continuum, 2023, ISSN 2770-0208
Editore: Optics continuum
DOI: 10.1364/optcon.500503

Automated Analysis of Fluorescence Kinetics in Single-Molecule Localization Microscopy Data Reveals Protein Stoichiometry

Autori: Alon Saguy, Tim N. Baldering, Lucien E. Weiss, Elias Nehme, Christos Karathanasis, Marina S. Dietz, Mike Heilemann, Yoav Shechtman
Pubblicato in: The Journal of Physical Chemistry B, 2021, ISSN 1520-5207
Editore: American Chemical Society
DOI: 10.1021/acs.jpcb.1c01130

DeepOM: single-molecule optical genome mapping via deep learning

Autori: Yevgeni Nogin, Tahir Detinis Zur, Sapir Margalit, Ilana Barzilai, Onit Alalouf, Yuval Ebenstein, Yoav Shechtman
Pubblicato in: Bioinformatics, 2023, ISSN 1367-4811
Editore: Oxford University Press
DOI: 10.1093/bioinformatics/btad137

3D printable diffractive optical elements by liquid immersion

Autori: Reut Orange-Kedem, Elias Nehme, Lucien E. Weiss, Boris Ferdman, Onit Alalouf, Nadav Opatovski, Yoav Shechtman
Pubblicato in: Nature Communications, Numero 12/1, 2021, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-021-23279-6

OM2Seq: Learning retrieval embeddings for optical genome mapping

Autori: Yevgeni Nogin, Danielle Sapir, Tahir Detinis Zur, Nir Weinberger, Yonatan Belinkov, Yuval Ebenstein, Yoav Shechtman
Pubblicato in: Bioinformatics Advances, 2024, ISSN 2635-0041
Editore: Oxford University Press
DOI: 10.1093/bioadv/vbae079

Multiplexed PSF Engineering for Three-Dimensional Multicolor Particle Tracking

Autori: Nadav Opatovski, Yael Shalev Ezra, Lucien E. Weiss, Boris Ferdman, Reut Orange-Kedem, and Yoav Shechtman
Pubblicato in: Nano Letters, 2021, ISSN 1530-6992
Editore: American Chemical Society
DOI: 10.1021/acs.nanolett.1c02068

Learning optimal wavefront shaping for multi-channel imaging

Autori: Elias Nehme, Boris Ferdman, Lucien Weiss, Tal Naor, Daniel Freedman, Tomer Michaeli, Yoav Shechtman
Pubblicato in: IEEE Transactions on Pattern Analysis and Machine Intelligence, Numero vol. 43, no. 7, pp. 2179-2192, 2021, Pagina/e 1-1, ISSN 0162-8828
Editore: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tpami.2021.3076873

Deep-ROCS: from speckle patterns to superior-resolved images by deep learning in rotating coherent scattering microscopy

Autori: Alon Saguy, Felix Jünger, Aviv Peleg, Boris Ferdman, Elias Nehme, Alexander Rohrbach, and Yoav Shechtman
Pubblicato in: Optics Express, 2021, ISSN 1094-4087
Editore: Optical Society of America
DOI: 10.1364/oe.424730

Microscopic scan-free surface profiling over extended axial ranges by point-spread-function engineering

Autori: Racheli Gordon-Soffer, Lucien E. Weiss, Ran Eshel, Boris Ferdman, Elias Nehme, Moran Bercovici, Yoav Shechtman
Pubblicato in: Science Advances, Numero 6/44, 2020, Pagina/e eabc0332, ISSN 2375-2548
Editore: science advances
DOI: 10.1126/sciadv.abc0332

Design of optimal labeling patterns for optical genome mapping via information theory

Autori: Yevgeni Nogin, Daniella Bar-Lev, Dganit Hanania, Tahir Detinis Zur, Yuval Ebenstein, Eitan Yaakobi, Nir Weinberger, Yoav Shechtman
Pubblicato in: Bioinformatics, 2023, ISSN 1367-4811
Editore: Oxford University Press
DOI: 10.1093/bioinformatics/btad601

Diffractive optical system design by cascaded propagation

Autori: Ferdman, Boris; Saguy, Alon; Alalouf, Onit; Shechtman, Yoav
Pubblicato in: Optics Express, Numero 3, 2022, ISSN 1094-4087
Editore: Optical Society of America
DOI: 10.1364/oe.465230

Monocular kilometer-scale passive ranging by point-spread function engineering

Autori: Nadav Opatovski, Dafei Xiao, Gal Harari, Yoav Shechtman
Pubblicato in: Optics Express, 2022, ISSN 1094-4087
Editore: Optical Society of America
DOI: 10.1364/oe.472150

Multicolor localization microscopy and point-spread-function engineering by deep learning

Autori: Eran Hershko, Lucien E. Weiss, Tomer Michaeli, Yoav Shechtman
Pubblicato in: Optics Express, Numero 27/5, 2019, Pagina/e 6158, ISSN 1094-4087
Editore: Optical Society of America
DOI: 10.1364/oe.27.006158

DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning

Autori: Elias Nehme, Daniel Freedman, Racheli Gordon, Boris Ferdman, Lucien E. Weiss, Onit Alalouf, Tal Naor, Reut Orange, Tomer Michaeli, Yoav Shechtman
Pubblicato in: Nature Methods, 2020, ISSN 1548-7091
Editore: Nature Publishing Group
DOI: 10.1038/s41592-020-0853-5

Three-dimensional localization microscopy in live flowing cells

Autori: Lucien E. Weiss, Yael Shalev Ezra, Sarah Goldberg, Boris Ferdman, Omer Adir, Avi Schroeder, Onit Alalouf, Yoav Shechtman
Pubblicato in: Nature Nanotechnology, Numero 15/6, 2020, Pagina/e 500-506, ISSN 1748-3387
Editore: Nature Publishing Group
DOI: 10.1038/s41565-020-0662-0

VIPR: vectorial implementation of phase retrieval for fast and accurate microscopic pixel-wise pupil estimation

Autori: Boris Ferdman, Elias Nehme, Lucien E. Weiss, Reut Orange, Onit Alalouf, Yoav Shechtman
Pubblicato in: Optics Express, Numero 28/7, 2020, Pagina/e 10179, ISSN 1094-4087
Editore: Optical Society of America
DOI: 10.1364/oe.388248

Quantifying cell cycle dependent chromatin dynamics during interphase by live 3D tracking

Autori: Tal Naor ,Yevgeni Nogin , Elias Nehme , Boris Ferdman, Lucien E. Weiss, Onit Alalouf, Yoav Shechtman
Pubblicato in: iScience, 2022, ISSN 2589-0042
Editore: [Cambridge MA]: Cell Press Elsevier Inc.
DOI: 10.1016/j.isci.2022.104197

Near index matching enables solid diffractive optical element fabrication via additive manufacturing

Autori: Reut Orange kedem; Nadav Opatovski; Dafei Xiao; Boris Ferdman; Onit Alalouf; Sushanta Kumar Pal; Ziyun Wang; Henrik von der Emde; Michael Weber; Steffen J. Sahl; Aleks Ponjavic; Ady Arie; Stefan W. Hell; Yoav Shechtman
Pubblicato in: Light: Science & Applications, Numero 12, 2023, ISSN 2047-7538
Editore: Light: Science & Applications
DOI: 10.1038/s41377-023-01277-1

Large-FOV 3D localization microscopy by spatially variant point spread function generation

Autori: Dafei Xiao, Reut Kedem Orange, Nadav Opatovski, Amit Parizat, Elias Nehme, Onit Alalouf, Yoav Shechtman
Pubblicato in: Science Advances, 2024, ISSN 2375-2548
Editore: Science Advances
DOI: 10.1126/sciadv.adj3656

DBlink: Dynamic localization microscopy in super spatiotemporal resolution via deep learning

Autori: Alon Saguy; Onit Alalouf; Nadav Opatovski; Sooyhen Jang; Mike Heilemann; Yoav Shechtman
Pubblicato in: Nature Methods, Numero 8, 2023, ISSN 1548-7091
Editore: Nature Publishing Group
DOI: 10.1101/2022.07.01.498428

Depth-enhanced high-throughput microscopy by compact PSF engineering

Autori: Nadav Opatovski, Elias Nehme, Noam Zoref, Ilana Barzilai, Reut Orange Kedem, Boris Ferdman, Paul Keselman, Onit Alalouf, Yoav Shechtman
Pubblicato in: Nature communications, 2024, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-024-48502-y

Other (1)

This microtubule does not exist: Super-resolution microscopy image generation by a diffusion model

Autori: Alon Saguy, Tav Nahimov, Maia Lehrman, Estibaliz Gómez-de-Mariscal, Iván Hidalgo-Cenalmor, Onit Alalouf, Ricardo Henriques,Yoav Shechtman
Pubblicato in: 2024
Editore: bioRxiv
DOI: 10.1101/2023.07.06.548004