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Repeat protein Function Refinement, Annotation and Classification of Topologies

Deliverables

Report on the state-of-the-art of TRP-related HMMs and TRP covariance analysis.

Report on the state-of-the-art of TRP-related HMMs and TRP covariance analysis.

Software for sequence- and structure-based pairwise TRP alignment

Software for sequence- and structure-based pairwise TRP alignment.

Platform and metrics for TRP tools benchmarking, including consensus detection of sequence- and structure-based methods

Platform and metrics for TRP tools benchmarking, including consensus detection of sequence- and structure-based methods.

Software for the identification of homologous TRPs from sequence databases.

Software for the identification of homologous TRPs from sequence databases.

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