CORDIS provides links to public deliverables and publications of HORIZON projects.
Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .
Deliverables
Collection of TRP datasets
Report on the state-of-the-art of TRP-related HMMs and TRP covariance analysis.Report on the function of new TRP families.
Report on the function of new TRP families
Report on examples of TRP evolution through internal duplication of coding sequence and repeat units recycled by evolution in globular structures.Report on examples of TRP evolution through internal duplication of coding sequence and repeat units recycled by evolution in globular structures
Report on mapping and analysis of exon boundaries on TRPs, comparison with their modularity, and TRP amino acid vs DNA sequence variability.Report on mapping and analysis of exon boundaries on TRPs comparison with their modularity and TRP amino acid vs DNA sequence variability
Symposia/Remote Symposia Period 2Symposia Period 2. Europe: 2 x All-Hands Meeting, 1 x Dissemination Training School, 1 x Final Dissemination meeting. Latin America: 2 x Annual Latin America Visit.
TRP function, localization and organism distribution enrichment analysis.TRP function localization and organism distribution enrichment analysis
Symposia/Remote Symposia Period 1Symposia Period 1 Europe 2 x AllHands Meeting 1 x Dissemination Training School Latin America 2 x Annual Latin America Visit
Report about TRP roles in PPI networks and interaction with RNA/DNA molecules and role of TRPs in host interactions with viruses and pathogens.Report about TRP roles in PPI networks and interaction with RNADNA molecules and role of TRPs in host interactions with viruses and pathogens
Report on TRP disorder, low-complexity, transmembrane domain overlap and examples of cooperative TRP folding.Report on TRP disorder lowcomplexity transmembrane domain overlap and examples of cooperative TRP folding
Report on TRP sequence and structural classification as well as sequence and structural clustering of the TRP universe.Cookbook for TRP annotation best-practices. Report about data format gold-standard, technical and implementation best-practices for TRP web resources.
Cookbook for TRP annotation bestpractices Report about data format goldstandard technical and implementation bestpractices for TRP web resources
Report on SLIMs in TRPs.Report on SLIMs in TRPs
Software for sequence- and structure-based pairwise TRP alignment.
Cross-link of generated TRP data into core data resources (e.g. InterPro) and related resources.Platform and metrics for TRP tools benchmarking, including consensus detection of sequence- and structure-based methods
Platform and metrics for TRP tools benchmarking, including consensus detection of sequence- and structure-based methods.
Deployment of TRP database APIs.Software for automatic TRP region and unit annotation
Software for the identification of homologous TRPs from sequence databases.
Integration of novel classification in TRP databases.
Curation of Pfam TRP-related HMMs.
Software for modeling TRP regions by homology
Publications
Author(s):
Lisanna Paladin; Mathieu Schaeffer; Pascale Gaudet; Monique Zahn-Zabal; Pierre-André Michel; Damiano Piovesan; Silvio C. E. Tosatto; Amos Marc Bairoch
Published in:
Bioinformatics, Issue 8, 2020, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btaa055
Author(s):
Del Conte A.; Monzon A. M.; Clementel D.; Camagni G. F.; Minervini G.; Tosatto S. C. E.; Piovesan D.
Published in:
Bioinformatics, Issue 16, 2023, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btad260
Author(s):
M. Leticia Ferrelli; Matías L. Pidre; Ruben García-Domínguez; Lucas N. Alberca; DMaría del Saz-Navarro; Carlos Santana-Molina; Damien P. Devos
Published in:
Journal of Structural Biology, Issue 8, 2023, ISSN 1047-8477
Publisher:
Academic Press
DOI:
10.1016/j.jsb.2023.107987
Author(s):
Martina Bevilacqua, Lisanna Paladin, Silvio C E Tosatto, Damiano Piovesan
Published in:
Bioinformatics, 2021, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btab764
Author(s):
Matteo Delucchi, Elke Schaper, Oxana Sachenkova, Arne Elofsson and Maria Anisimova
Published in:
Genes, 2020, ISSN 2073-4425
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/genes11040407
Author(s):
Pablo Mier, Carlos A Elena-Real, Juan Cortés, Pau Bernadó, Miguel A Andrade-Navarro
Published in:
Bioinformatics, 2022, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btac610
Author(s):
Pablo Mier, Miguel A. Andrade-Navarro
Published in:
Computational and Structural Biotechnology Journal, Issue 21, 2024, Page(s) 5408-5412, ISSN 2001-0370
Publisher:
Elsevier
DOI:
10.1016/j.csbj.2023.10.054
Author(s):
Gustavo Parisi; Nicolas Palopoli; Silvio C. E. Tosatto; María Silvina Fornasari; Peter Tompa
Published in:
Current Research in Structural Biology, Issue 8, 2021, ISSN 2665-928X
Publisher:
Elsevier
DOI:
10.1016/j.crstbi.2021.06.002
Author(s):
Lundström OS, Adriaan Verbiest M, Xia F, Jam HZ, Zlobec I, Anisimova M, Gymrek M
Published in:
Journal of Molecular Biology, 2023, ISSN 0022-2836
Publisher:
Academic Press
DOI:
10.1016/j.jmb.2023.168260
Author(s):
Ian Walsh, Dmytro Fishman, Dario Garcia-Gasulla, Tiina Titma, Gianluca Pollastri, ELIXIR Machine Learning Focus Group, Jennifer Harrow, Fotis E. Psomopoulos & Silvio C. E. Tosatto
Published in:
Nature Methods, 2021, ISSN 1548-7091
Publisher:
Nature Publishing Group
DOI:
10.1038/s41592-021-01205-4
Author(s):
Alexander Miguel Monzon; Marco Necci; Federica Quaglia; Ian Walsh; Giuseppe Zanotti; Damiano Piovesan; Silvio C. E. Tosatto
Published in:
International Journal of Molecular Sciences, Issue 8, 2020, ISSN 1422-0067
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.1101/2020.02.17.952028
Author(s):
Théo Falgarone, Etienne Villain, Francois Richard, Zarifa Osmanli, Andrey V Kajava
Published in:
Briefings in Bioinformatics, 2023, ISSN 1467-5463
Publisher:
Oxford University Press
DOI:
10.1093/bib/bbad183
Author(s):
Arrías PN, Monzon AM, Clementel D, Mozaffari S, Piovesan D, Kajava AV, Tosatto SCE
Published in:
Journal of Structural Biology, 2023, ISSN 1047-8477
Publisher:
Academic Press
DOI:
10.1016/j.jsb.2023.108001
Author(s):
Damiano Clementel, Alessio Del Conte, Alexander Miguel Monzon, Giorgia F Camagni, Giovanni Minervini, Damiano Piovesan, Silvio C E Tosatto
Published in:
Nucleic Acids Research, 2022, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkac365
Author(s):
Manuel, Bezerra-Brandao; Ronaldo Romario, Tunque Cahui; Layla, Hirsh
Published in:
Journal of Structural Biology, Issue 6, 2023, ISSN 1047-8477
Publisher:
Academic Press
DOI:
10.1016/j.jsb.2023.108033
Author(s):
Mac Donagh J, Marchesini A, Spiga A, Fallico MJ, Arrías PN, Monzon AM, Vagiona AC, Gonçalves-Kulik M, Mier P, Andrade-Navarro MA
Published in:
International Journal of Molecular Sciences, 2024, ISSN 1661-6596
Publisher:
Multidisciplinary Digital Publishing Institute
DOI:
10.3390/ijms25052994
Author(s):
Piovesan, Damiano; Zago, Davide; Joshi, Parnal; Kaluza, M. Clara De Paolis; Monzon, Alexander Miguel; Reade, Walter; Friedberg, Iddo; Radivojac, Predrag; Tosatto, Silvio C. E.
Published in:
Bioinformatics Advances, Issue 16, 2024, ISSN 2635-0041
Publisher:
Oxford University Press
DOI:
10.1093/bioadv/vbae043
Author(s):
Elena-Real CA, Mier P, Sibille N, Andrade-Navarro MA, Bernadó P.
Published in:
Current Opinion in Structural Biology, 2023, ISSN 0959-440X
Publisher:
Elsevier BV
DOI:
10.1016/j.sbi.2023.102726
Author(s):
Erdozain Bagolin, Sofía Agostina; Barrionuevo, Emilia Mercedes; Ripoll, Lucas; Mier, Pablo; Andrade Navarro, Miguel A.
Published in:
Journal of Structural Biology, Issue 11, 2023, ISSN 1047-8477
Publisher:
Academic Press
DOI:
10.1016/j.jsb.2023.107962
Author(s):
Vladimir Perovic; Jeremy Y Leclercq; Neven Sumonja; Francois Richard; Francois Richard; Nevena Veljkovic; Andrey V. Kajava
Published in:
Bioinformatics, Issue 8, 2020, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btaa121
Author(s):
Escobedo N, Monzon AM, Fornasari MS, Palopoli N, Parisi G
Published in:
Current Protocols, 2023, ISSN 2691-1299
Publisher:
John Wiley & Sons
DOI:
10.1002/cpz1.764
Author(s):
Lisanna Paladin; Martina Bevilacqua; Sara Errigo; Damiano Piovesan; Ivan Mičetić; Marco Necci; Alexander Miguel Monzon; María Laura Fabre; José Luis López; Juliet F. Nilsson; Javier Rios; Pablo Lorenzano Menna; Maia Diana Eliana Cabrera; Martin Gonzalez Buitron; Mariane Gonçalves Kulik; Sebastian Fernandez-Alberti; María Silvina Fornasari; Gustavo Parisi; Antonio Lagares; Layla Hirsh; Migue
Published in:
Nucleic Acids Research, Issue 4, 2021, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkaa1097
Author(s):
Manasra S, Kajava AV
Published in:
Journal of Structural Biology, 2023, ISSN 1047-8477
Publisher:
Academic Press
DOI:
10.1016/j.jsb.2023.108014
Author(s):
Del Conte A.; Mehdiabadi M.; Bouhraoua A.; Monzon A. M.; Tosatto S. C. E.; Piovesan D.
Published in:
Proteins: Structure, Function and Bioinformatics, Issue 15, 2023, ISSN 0887-3585
Publisher:
Wiley-Liss Inc
DOI:
10.1002/prot.26582
Author(s):
Claudio Bassot, Arne Elofsson
Published in:
PLOS Computational Biology, 2021, ISSN 1553-734X
Publisher:
Public Library of Science
DOI:
10.1371/journal.pcbi.1008798
Author(s):
Agustín Ormazábal; Matías Sebastián Carletti; Tadeo Enrique Saldaño; Martín Gonzalez-Buitron; Julia Marchetti; Nicolas Palopoli; Alex Bateman
Published in:
PLoS ONE, Issue 11, 2023, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0290890
Author(s):
Lisanna Paladin, Marco Necci, Damiano Piovesan, Pablo Mier, Miguel A.Andrade-Navarro, Silvio C.E.Tosatto
Published in:
Journal of Structural Biology, 2022, ISSN 1047-8477
Publisher:
Academic Press
DOI:
10.1016/j.jsb.2020.107608
Author(s):
Max A. Verbiest; Oxana Lundström; Feifei Xia; Michael Baudis; Tugce Bilgin Sonay; Maria Anisimova
Published in:
Scientific Reports, Issue 18, 2024, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1101/2023.11.29.569189
Author(s):
Max A. Verbiest, Matteo Delucchi, Tugce Bilgin Sonay and Maria Anisimova
Published in:
Frontiers in Bioinformatics, 2021, ISSN 2673-7647
Publisher:
Frontiers Media
DOI:
10.3389/fbinf.2021.685844
Author(s):
András Hatos, Federica Quaglia, Damiano Piovesan, Silvio C E Tosatto
Published in:
Database, 2021, ISSN 1758-0463
Publisher:
Oxford University Press
DOI:
10.1093/database/baab019
Author(s):
Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, CAID predictors , Silvio C E Tosatto, Damiano Piovesan
Published in:
Nucleic Acids Research, 2023, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkad430
Author(s):
Pablo Mier, Miguel A. Andrade-Navarro
Published in:
BMC Ecology and Evolution, 2020, ISSN 2730-7182
Publisher:
Springer Nature
DOI:
10.1186/s12862-020-01626-3
Author(s):
Osmanli, Z.; Falgarone, T.; Samadova, T.; Aldrian, G.; Leclercq, J.; Shahmuradov, I.; Kajava, A.V.
Published in:
Biomolecules, 2022, ISSN 2218-273X
Publisher:
Multidisciplinary Digital Publishing Institute
DOI:
10.3390/biom12111610
Author(s):
Mohamed Kamel, Kristina Kastano, Pablo Mier, Miguel A. Andrade
Published in:
Journal of Molecular Biology, 2021, ISSN 0022-2836
Publisher:
Academic Press
DOI:
10.1016/j.jmb.2021.166895
Author(s):
Hamidreza Ghafouri; Tamas Lazar; Alessio Del Conte; Luiggi G Tenorio Ku; Maria C Aspromonte; Pau Bernadó; Belén Chaves-Arquero; Lucia Beatriz Chemes; Damiano Clementel; Tiago N Cordeiro; Carlos A Elena-Real; Michael Feig; Isabella C Felli; Carlo Ferrari; Julie D Forman-Kay; Tiago Gomes; Frank Gondelaud; Claudiu C Gradinaru; Tâp Ha-Duong; Teresa Head-Gordon; Pétur O Heidarsson; Giacomo Janson
Published in:
Nucleic Acids Research, Issue 16, 2024, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkad947
Author(s):
Matteo Delucchi; Paulina Näf; Spencer Bliven; Maria Anisimova
Published in:
Frontiers in Bioinformatics, Issue 5, 2021, ISSN 2673-7647
Publisher:
Frontiers Media
DOI:
10.21256/zhaw-22764
Author(s):
Jaina Mistry; Sara Chuguransky; Lowri Williams; Matloob Qureshi; Gustavo A. Salazar; Erik L. L. Sonnhammer; Silvio C. E. Tosatto; Lisanna Paladin; Shriya Raj; Lorna Richardson; Robert D. Finn; Alex Bateman
Published in:
Nucleic Acids Research, Issue 5, 2020, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkaa913
Author(s):
Monzon, Alexander Miguel; Arrías, Paula Nazarena; Elofsson, Arne; Mier, Pablo; Andrade-Navarro, Miguel A; Bevilacqua, Martina; Clementel, Damiano; Bateman, Alex; Hirsh, Layla; Fornasari, Maria Silvina; Parisi, Gustavo; Piovesan, Damiano; Kajava, Andrey V; Tosatto, Silvio C E
Published in:
Journal of Structural Biology, Issue 5, 2023, ISSN 1047-8477
Publisher:
Academic Press
DOI:
10.1016/j.jsb.2023.108023
Author(s):
Maria Cristina Aspromonte; Maria Victoria Nugnes; Federica Quaglia; Adel Bouharoua; Vasileios Sagris; Vasilis J Promponas; Anastasia Chasapi; Erzsébet Fichó; Galo E Balatti; Gustavo Parisi; Martín González Buitrón; Gabor Erdos; Matyas Pajkos; Zsuzsanna Dosztányi; Laszlo Dobson; Alessio Del Conte; Damiano Clementel; Edoardo Salladini; Emanuela Leonardi; Fatemeh Kordevani; Hamidreza Ghafouri;
Published in:
Nucleic Acids Research, Issue 18, 2024, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkad928
Author(s):
Patryk Jarnot; Joanna Ziemska-Legiecka; László Dobson; Matthew Merski; Pablo Mier; Miguel A. Andrade-Navarro; John M. Hancock; Zsuzsanna Dosztányi; Lisanna Paladin; Marco Necci; Damiano Piovesan; Silvio C. E. Tosatto; Vasilis J. Promponas; Marcin Grynberg; Aleksandra Gruca
Published in:
Nucleic Acids Research, Issue 7, 2020, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkaa339
Author(s):
Max Verbiest; Mikhail Maksimov; Ye Jin; Maria Anisimova; Melissa Gymrek; Tugce Bilgin Sonay
Published in:
Journal of Evolutionary Biology, Issue 18, 2023, ISSN 1010-061X
Publisher:
Blackwell Publishing Inc.
DOI:
10.1111/jeb.14106
Author(s):
Federica Quaglia
Published in:
Abstract booklet of the 14th Annual Biocuration Conference (virtual), including invited speakers talks and poster session presentations, 2021
Publisher:
Zenodo
DOI:
10.5281/zenodo.5570276
Author(s):
Nahuel Escobedo, Ronaldo Romario Tunque Cahui, Gastón Caruso, Emilio García Ríos, Layla Hirsh, Alexander Miguel Monzon, Gustavo Parisi, VNicolas Palopoli
Published in:
bioRxiv, 2022, ISSN 2692-8205
Publisher:
bioRxiv
DOI:
10.1101/2022.02.15.480082
Author(s):
Federica Quaglia, Rama Balakrishnan, Susan M Bello, Nicole Vasilevsky
Published in:
Database, 2022, ISSN 1758-0463
Publisher:
Oxford University Press
DOI:
10.1093/database/baac027
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