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The origin and evolution of Life in the universe

Deliverables

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Publications

Quorum sensing communication between lipid-based artificial cells

Author(s): Antoni Llopis-Lorente; Bastiaan C. Buddingh'; R. Martínez-Máñez; Jan C. M. van Hest; Loai K. E. Abdelmohsen
Published in: Chemical Communications, 59(5), 579 - 582. Royal Society of Chemistry, Issue Volume 59, Issue 5, 2022, Page(s) 579 - 582, ISSN 1359-7345
Publisher: Royal Society of Chemistry
DOI: 10.1039/d2cc05367e

On the diversity of F 420 ‐dependent oxidoreductases: A sequence‐ and structure‐based classification

Author(s): María Laura Mascotti, Maximiliano Juri Ayub, Marco W. Fraaije
Published in: Proteins: Structure, Function, and Bioinformatics, Issue 89/11, 2021, Page(s) 1497-1507, ISSN 0887-3585
Publisher: Wiley-Liss Inc
DOI: 10.1002/prot.26170

Role of Curvature-Sensing Proteins in the Uptake of Nanoparticles with Different Mechanical Properties

Author(s): Daphne Montizaan, Catherine Saunders, Keni Yang, Sajitha Sasidharan, Sourav Maity, Catharina Reker-Smit, Marc C.A. Stuart, Costanza Montis, Debora Berti, Wouter H. Roos, Anna Salvati
Published in: Small, Issue vol 19 , issue 39, 2023, Page(s) 2303267, ISSN 1613-6810
Publisher: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.202303267

Mutational and structural analysis of an ancestral fungal dye-decolorizing peroxidase

Author(s): Ulises A. Zitare; Ulises A. Zitare; Mohamed H. Habib; Mohamed H. Habib; Henriëtte J. Rozeboom; María Laura Mascotti; María Laura Mascotti; Smilja Todorovic; Marco W. Fraaije
Published in: The FEBS Journal, Issue VOLUME=288;ISSUE=11, 2020, Page(s) TARTPAGE=3602;ENDPAGE=3618, ISSN 1742-464X
Publisher: Blackwell Publishing Inc.
DOI: 10.5281/zenodo.7190636

Achieving Control in Micro-/Nanomotor Mobility

Author(s): Alexander D. Fusi, Yudong Li, Dr. A. Llopis-Lorente, Dr. Tania Patiño, Prof. Dr. Jan C. M. van Hest, Dr. Loai K. E. A. Abdelmohsen
Published in: Angewandte ChemieBron:Wiley Online Library: Complete Journals, Issue volume 135, issue 5, 2023, ISSN 0044-8249
Publisher: John Wiley and Sons,
DOI: 10.1002/ange.202214754

A comparative laboratory study of soft X-ray-induced ionization and fragmentation of five small PAH cations

Author(s): Yining Huo, Mónica K. Espinoza Cangahuala, Vicente Zamudio-bayer, Marcelo Goulart, Markus Kubin, Martin Timm, J. Tobias Lau, Bernd von Issendorff, Ronnie Hoekstra, Shirin Faraji, Thomas Schlathölter
Published in: The European Physical Journal D, Issue volume 77, issue 10, 2023, Page(s) 11 pages, ISSN 1434-6060
Publisher: Springer Verlag
DOI: 10.1140/epjd/s10053-023-00763-w

Non-Linear Effects in Asymmetric Catalysis: Impact of Catalyst Precipitation

Author(s): Yannick Geiger, Stéphane Bellemin-Laponnaz
Published in: ChemCatChem, Issue vol 14, issue 9, 2022, Page(s) e202200165, pages 7, ISSN 1867-3880
Publisher: Wiley - VCH Verlag GmbH & CO. KGaA
DOI: 10.1002/cctc.202200165

Temporal segregation of biosynthetic processes is responsible for metabolic oscillations during the budding yeast cell cycle

Author(s): Vakil Takhaveev; Serdar Özsezen; Edward N. Smith; Andre Zylstra; Marten L. Chaillet; Haoqi Chen; Alexandros Papagiannakis; Andreas Milias-Argeitis; Matthias Heinemann
Published in: Nature Metabolism, Issue volume 5, issue 2, 2023, Page(s) 294-313, ISSN 2522-5812
Publisher: Nature Research
DOI: 10.3929/ethz-b-000601600

Bacterial multi-solute transporters

Author(s): D J Slotboom*, T W Ettema, M Nijland, C Thangaratnarajah
Published in: FEBS Letters, Issue vol 594, issue 23, 2020, Page(s) 3898-3907, ISSN 1742-4658
Publisher: Wiley
DOI: 10.1002/1873-3468.13912

Structural consequences of BMPR2 kinase domain mutations causing pulmonary arterial hypertension

Author(s): Apirat Chaikuad, Chancievan Thangaratnarajah, Frank von Delft, Alex N Bullock
Published in: Scientific Reports, Issue vol 9, issue 1, 2019, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-54830-7

Asymmetric Synthesis of Chiral‐at‐P Alkenylphosphonamidates through Nickel‐Catalyzed C−P Coupling of Phosphoramidites and Alkenyl Halides

Author(s): Xiao‐Bing Chen; Damián Padín; Charlotte N. Stindt; Ben L. Feringa
Published in: Angewandte Chemie (International ed. in English, Issue vol 62, number 33, 2023, ISSN 1433-7851
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/ange.202307450

Metabolic dynamics during the cell cycle

Author(s): Andre Zylstra, Matthias Heinemann
Published in: Current Opinion in Systems Biology, Issue 24523100, 2022, ISSN 2452-3100
Publisher: Elsevier
DOI: 10.1016/j.coisb.2022.100415

Observation of Hyperpositive Non-Linear Effect in Asymmetric Organozinc Alkylation in Presence of N-Pyrrolidinyl Norephedrine

Author(s): Thibault Thierry, Yannick Geiger, Stéphane Bellemin-Laponnaz
Published in: Molecules, Issue vol 27, issue12, 2022, Page(s) 9 pages, ISSN 1431-5157
Publisher: MDPI AG
DOI: 10.3390/molecules27123780

Mutational and structural analysis of an ancestral fungal dye‐decolorizing peroxidase

Author(s): Ulises A. Zitare, Mohamed H. Habib, Henriette Rozeboom, Maria L. Mascotti, Smilja Todorovic, Marco W. Fraaije
Published in: The FEBS Journal, 2020, ISSN 1742-464X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/febs.15687

Senescence in yeast is associated with amplified linear fragments of chromosome XII rather than ribosomal DNA circle accumulation

Author(s): Andre Zylstra, Hanane Hadj-Moussa, Dorottya Horkai, Alex J. Whale, Baptiste Piguet, Jonathan Houseley
Published in: PLoS Biology, Issue volume 21, issue 8, 2023, Page(s) 42 pages, ISSN 1544-9173
Publisher: Public Library of Science
DOI: 10.1371/journal.pbio.3002250

A target list for searching for habitable exomoons

Author(s): Vera Dobos, András Haris, Inga E. E. Kamp, Floris F. S. van der Tak
Published in: Monthly Notices of the Royal Astronomical Society, Issue 13652966, 2022, Page(s) 5290–5298, ISSN 1365-2966
Publisher: Oxford University Press
DOI: 10.1093/mnras/stac1180

Endocytosis-like DNA uptake by cell wall-deficient bacteria

Author(s): Renée Kapteijn, Shraddha Shitut, Dennis Aschmann, Le Zhang, Marit de Beer, Deniz Daviran, Rona Roverts, Anat Akiva, Gilles P. van Wezel, Alexander Kros & Dennis Claessen
Published in: Nature Communications, Issue volume 13, issue 1, 2022, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-022-33054-w

Engineering chemical communication between micro/nanosystems

Author(s): Beatriz de Luis, Antoni Llopis-Lorente, Félix Sancenón and Ramón Martínez-Máñez
Published in: Chemical Society Reviews, Issue 03060012, 2021, Page(s) 8829-8856, ISSN 0306-0012
Publisher: Royal Society of Chemistry
DOI: 10.1039/d0cs01048k

Author Correction: CRISPR-based transcriptional activation tool for silent genes in filamentous fungi

Author(s): László Mózsik, Mirthe Hoekzema, Niels A.W. de Kok, Roel A.L. Bovenberg, Yvonne Nygård, Arnold J.M. Driessen
Published in: Scientific Reports, Issue vol 11, issue 1, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-99654-6

Artificial cells with viscoadaptive behavior based on hydrogel-loaded giant unilamellar vesicles

Author(s): Antoni Llopis-Lorente, Maaike J. G. Schotman, Heorhii V. Humeniuk, Jan C. M. van Hest, Patricia Y. W. Dankers and Loai K. E. A. Abdelmohsen
Published in: Chemical Science, Issue Issue 2, 2024, 2024, Page(s) 629-638, ISSN 2041-6520
Publisher: Royal Society of Chemistry
DOI: 10.1039/d3sc04687g

Identification and characterization of archaeal and bacterial F420-dependent thioredoxin reductases

Author(s): Guang Yang, Hein J Wijma, Henriëtte J Rozeboom, Maria Laura Mascotti, Marco W Fraaije
Published in: The FEBS Journal, Issue volume 290, issue 19, 2023, Page(s) 4777-4791, ISSN 1742-464X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/febs.16896

Enantioselective Self-Replicators

Author(s): Shuo Yang; Yannick Geiger; Marc Geerts; Marcel J. Eleveld; Armin Kiani; Sijbren Otto
Published in: Journal of the American Chemical Society, Issue volume 145, issue 30, 2023, Page(s) 16889-16898, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/jacs.3c05472

Long-term tidal evolution of the TRAPPIST-1 system

Author(s): R. Brasser, G. Pichierri, V. Dobos, A. C. Barr
Published in: Monthly Notices of the Royal Astronomical Society, Issue 13652966, 2022, Page(s) 2373–2385, ISSN 1365-2966
Publisher: Oxford University Press
DOI: 10.1093/mnras/stac1907

All-Photochemical Rotation of Molecular Motors with a Phosphorus Stereoelement

Author(s): Boursalian, Gregory B.; Nijboer, Eise R.; Dorel, Ruth; Pfeifer, Lukas; Markovitch, Omer; Blokhuis, Alex; Feringa, Ben L.
Published in: American Chemical Society, Issue 142, 39, 2020, Page(s) 16868–16876, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/jacs.0c08249

A conserved sequence motif in the E. coli soluble FAD-containing pyridine nucleotide transhydrogenase is important for reaction efficiency

Author(s): Michele Partipilo; Guang Yang; Maria Laura Mascotti; Hein J. Wijma; Dirk Jan Slotboom; Marco W. Fraaije
Published in: The Journal of Biological Chemistry, Issue 298, issue 9, 2022, ISSN 0021-9258
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1016/j.jbc.2022.102304

From the mysteries of the fly agaric: The toxin of the Amanita muscaria (Das Gift des Fliegenpilzes: Von den Geheimnissen des Narrenschwamms)

Author(s): Sebastian Obermaier*, Michael Müller
Published in: Chemie in unserer zeit, Issue vol 56, 2022, Page(s) """256--264", ISSN 0009-2851
Publisher: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/ciuz.202000085

Small-molecule autocatalysis drives compartment growth, competition and reproduction

Author(s): Heng Lu, Alex Blokhuis, Rebecca Turk-MacLeod, Jayaprakash Karuppusamy, Andrea Franconi, Gabrielle Woronoff, Cyrille Jeancolas, Afshin Abrishamkar, Estelle Loire, Fabien Ferrage, Philippe Pelupessy, Ludovic Jullien, Eörs Szathmary, Philippe Nghe & Andrew D. Griffiths
Published in: Nature Chemistry, Issue nr 16, 2024, Page(s) 70-78, ISSN 1755-4349
Publisher: Springer Nature
DOI: 10.1038/s41557-023-01276-0

RNA-Protein Interactions in Molecular Life and Health: A Computational Approach

Author(s): Driver, Mark D.; Onck, Patrick R.
Published in: Biophysical Journal, 120(3), 81A - 81A. CELL PRESS, Issue 120, 2021, Page(s) 81A--81A, ISSN 0006-3495
Publisher: Biophysical Society
DOI: 10.1016/j.bpj.2020.11.702

Evolution of enzyme functionality in the flavin-containing monooxygenases

Author(s): Gautier Bailleul, Guang Yang, Callum R Nicoll, Andrea Mattevi, Marco W Fraaije, Maria Laura Mascotti
Published in: Nature Communications, Issue '14:1042, 2023, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-36756-x

Stoichiometry alone can steer supramolecular systems on complex free energy surfaces with high selectivity

Author(s): Dávid Komáromy*, Theodora Tiemersma-Wegman, Johan Kemmink, Giuseppe Portale, Paul R. Adamski, Alex Blokhuis, Friso S. Aalbers, Ivana Marić, Guillermo Monreal Santiago, Jim Ottelé, Ankush Sood, Vittorio Saggiomo, Bin Liu, Pieter van der Meulen, Sijbren Otto
Published in: Chem, Issue volume 7, 2021, Page(s) 1933--1951, ISSN 2451-9308
Publisher: Elsevier
DOI: 10.1016/j.chempr.2021.05.020

Selective Disruption of Survivin's Protein-Protein Interactions: A Supramolecular Approach Based on Guanidiniocarbonylpyrrole

Author(s): Dennis Aschmann, Dr. Cecilia Vallet, Dr. Sunil K. Tripathi, Dr. Yasser B. Ruiz-Blanco, Max Brabender, Prof. Dr. Carsten Schmuck, Prof. Dr. Elsa Sanchez-Garcia, Prof. Dr. Shirley K. Knauer, Prof.Dr. Michael Giese
Published in: ChemBioChem, Issue issue 5, 2022, ISSN 1439-4227
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/cbic.202100618

Cryo-EM studies of membrane proteins at 200 keV

Author(s): Chancievan Thangaratnarajah, Jan Rheinberger, Cristina Paulino
Published in: Current Opinion in Structural Biology, Issue volume 76, 2022, ISSN 1879-033X
Publisher: Elsevier
DOI: 10.1016/j.sbi.2022.102440

Ancestral-sequence reconstruction unveils the structural basis of function in mammalian FMOs

Author(s): Callum R Nicoll, Gautier Bailleul, Filippo Fiorentini, María Laura Mascotti, Marco W Fraaije*, Andrea Mattevi
Published in: Nature Structural & Molecular Biology, Issue vol 27, 2019, Page(s) 14-24, ISSN 1545-9985
Publisher: Nature Publishing Group
DOI: 10.1038/s41594-019-0347-2

Structural properties of the HNF-1A transactivation domain

Author(s): Laura Kind; Mark Driver; Arne Raasakka; Patrick R. Onck; Pål Rasmus Njølstad; Thomas Arnesen; Petri Kursula
Published in: JournalFrontiers in Molecular Biosciences, Issue volume 10, 2023, ISSN 2296-889X
Publisher: Frontiers Media S.A.
DOI: 10.1101/2023.06.23.546236

Motility of Active Microparticles in Cell-Sized Lipid Vesicles

Author(s): Shidong Song; Antoni Llopis-Lorente; Alexander F. Mason; Loai K. E. A. Abdelmohsen; Jan C. M. van Hest
Published in: ournal of the American Chemical Society, Issue volume 144, issue 30, 2022, Page(s) 13831–13838, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/jacs.2c05232

Multi-site-specific polymer grafting from nucleic acids

Author(s): Sandeepa K. Vittala 1, Roxanne E. Kieltyka
Published in: Chem, Issue Vol 9 , issue 11, 2023, Page(s) Pages 3018-3020, ISSN 2451-9308
Publisher: Elsevier
DOI: 10.1016/j.chempr.2023.10.012

Impact of ancestral sequence reconstruction on mechanistic and structural enzymology

Author(s): Callum R Nicoll, Marta Massari, Marco W Fraaije, Maria Laura Mascotti, Andrea Mattevi
Published in: Current Opinion in Structural Biology, Issue volume 82, 2023, Page(s) article number 102669, ISSN 0959-440X
Publisher: Elsevier BV
DOI: 10.1016/j.sbi.2023.102669

Universal motifs and the diversity of autocatalytic systems

Author(s): Alex Blokhuis*, David Lacoste, Philippe Nghe
Published in: Proceedings of the National Academy of Sciences of the United States of America, Issue volume 117, nr 41, 2020, Page(s) 25230-25236, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2013527117

Ancestral reconstruction of mammalian FMO1 enables structural determination, revealing unique features that explain its catalytic properties

Author(s): Gautier Bailleul, Callum R. Nicoll, María Laura Mascotti, Andrea Mattevi, Marco W. Fraaije
Published in: Journal of Biological Chemistry, Issue 296, 2021, Page(s) 100221, ISSN 0021-9258
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1074/jbc.ra120.016297

Horseradish Peroxidase-Functionalized Gold Nanoconjugates for Breast Cancer Treatment Based on Enzyme Prodrug Therapy

Author(s): Gema Vivo-Llorca; Ángela Morellá-Aucejo; Alba García-Fernández; Paula Díez; Antoni Llopis-Lorente; Mar Orzáez; Ramón Martínez-Máñez
Published in: International Journal of Nanomedicine, Issue 17, 2022, Page(s) Pages 409 - 422, ISSN 1176-9114
Publisher: Dove Medical Press Ltd
DOI: 10.2147/ijn.s323802

Reconstructing the evolutionary history of F-420-dependent dehydrogenases

Author(s): M Laura Mascotti, Hemant Kumar, Quoc-Thai Nguyen, Maximiliano Juri Ayub, Marco W. Fraaije
Published in: Scientific Reports, Issue vol 8, issue 1, 2018, Page(s) 8, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-018-35590-2

Stoichiometry alone can steer supramolecular systems on complex free energy surfaces with high selectivity

Author(s): Dávid Komáromy; Theodora D. Tiemersma-Wegman; Johan Kemmink; Giuseppe Portale; Paul R. Adamski; Alex Blokhuis; Friso S. Aalbers; Ivana Marić; Guillermo Monreal Santiago; Jim Ottelé; Ankush Sood; Vittorio Saggiomo; Bin Liu; Pieter van der Meulen; Sijbren Otto
Published in: Chem, 7(7), 1933 - 1951, Issue Volume 7, Issue 7,, 2021, Page(s) Pages 1933 - 1951, ISSN 2451-9308
Publisher: Elsevier
DOI: 10.1016/j.chempr.2021.05.020

Impacts of Severe Tropical Cyclone Olwyn and the biogeomorphic response, Hamelin Pool, Shark Bay, Western Australia

Author(s): Thérèse E. Morris, Stephen Morris, Peter R.C.S. Fearns, Aditya Chopra, Mehrooz F. Aspandair, Lindsay B. Collins, Micheal J. O'Leary, Pieter T. Visscher
Published in: The Depositional Record, Issue 20554877, 2022, Page(s) 786-828, ISSN 2055-4877
Publisher: Wiley
DOI: 10.1002/dep2.183

Natamycin sequesters ergosterol and interferes with substrate transport by the lysine transporter Lyp1 from yeast

Author(s): Maria Szomek; Peter Reinholdt; Hanna-Loisa Walther; Holger A. Scheidt; Peter Müller; Sebastian Obermaier; Bert Poolman; Jacob Kongsted; Daniel Wüstner
Published in: Biochimica et Biophysica Acta - Biomembranes, 1864(11):184012, Issue 3, 2022, ISSN 0005-2736
Publisher: Elsevier BV
DOI: 10.1016/j.bbamem.2022.184012

Key features of inhibitor binding to the human mitochondrial pyruvate carrier hetero-dimer

Author(s): Sotiria Tavoulari*, Tom J J Schirris, Vasiliki Mavridou, Chancievan Thangaratnarajah, Martin S King, Daniel T D Jones, Shujing Ding, Ian M Fearnley, Edmund R S Kunji
Published in: Molecular metabolism, Issue vol 60, 2022, Page(s) 101469, 13 pages, ISSN 2212-8778
Publisher: Elsevier GmbH
DOI: 10.1016/j.molmet.2022.101469

Complexes with Atomic Gold Ions: Efficient Bis-Ligand Formation

Author(s): Felix Duensing, Elisabeth Gruber, Paul Martini, Marcelo Goulart, Michael Gatchell, Bilal Rasul, Olof Echt, Fabio Zappa, Masoomeh Mahmoodi-Darian*, Paul Scheier
Published in: Molecules, Issue volume 26, 2021, ISSN 1431-5157
Publisher: MDPI AG
DOI: 10.3390/molecules26123484

CRISPR-based transcriptional activation tool for silent genes in filamentous fungi

Author(s): László Mózsik, Mirthe Hoekzema, Niels A W de Kok, Roel A L Bovenberg, Yvonne Nygård, Arnold J M Driessen
Published in: Scientific Reports, Issue vol 11, issue 1, 2021, Page(s) 13 pages, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-80864-3

Switching the Mode of Drug Release from a Reaction-Coupled Low-Molecular-Weight Gelator System by Altering Its Reaction Pathway

Author(s): Willem E. M. Noteborn; Sandeepa K. Vittala; Maria Broto Torredemer; Chandan Maity; Frank Versluis; Rienk Eelkema; Roxanne E. Kieltyka
Published in: Biomacromolecules, 24(1), 377 - 386. AMER CHEMICAL SOC, Issue 24, 2023, ISSN 1525-7797
Publisher: American Chemical Society
DOI: 10.1021/acs.biomac.2c01197

The SLC25 Carrier Family: Important Transport Proteins in Mitochondrial Physiology and Pathology

Author(s): Edmund R. S. Kunji, Martin S. King, Jonathan J. Ruprecht, Chancievan Thangaratnarajah
Published in: Physiology, Issue 35/5, 2020, Page(s) 302-327, ISSN 1548-9213
Publisher: American Physiological Society
DOI: 10.1152/physiol.00009.2020

Insights into the bilayer-mediated toppling mechanism of a folate-specific ECF transporter by cryo-EM

Author(s): Chancievan Thangaratnarajah, Jan Rheinberger, Cristina Paulino, Dirk J. Slotboom
Published in: Proceedings of the National Academy of Sciences, Issue 118/34, 2021, Page(s) e2105014118, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2105014118

"Soft-x-ray spectroscopy of <mml:math xmlns:mml=""http://www.w3.org/1998/Math/MathML""><mml:msup><mml:mi mathvariant=""normal"">coronene</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:math> and <mml:math xmlns:mml=""http://www.w3.org/1998/Math/MathML""><mml:msup><mml:mrow><mml:mo>(</mml:mo><mml:mtext>coronene</mml:mtext><mml:mo>+</mml:mo><mml:mi mathvariant=""normal"">H</mml:mi><mml:mo>)</mml:mo></mml:mrow><mm"

Author(s): Yining Huo; Mónica K. Espinoza Cangahuala; Marcelo Goulart; Vicente Zamudio-Bayer; Markus Kubin; Martin Timm; J. Tobias Lau; Bernd von Issendorff; Ronnie Hoekstra; Shirin Faraji; Thomas Schlathölter
Published in: Physical Review A - Atomic, Molecular, and Optical Physics, Issue volume 106, issue 6, 2022, Page(s) 11, ISSN 2469-9926
Publisher: American Physical Society
DOI: 10.1103/physreva.106.063104

Survival of Exomoons Around Exoplanets

Author(s): V. Dobos, S. Charnoz, A. Pál, A. Roque-Bernard, Gy. M. Szabó
Published in: Publications of the Astronomical Society of the Pacific, Issue 133/1027, 2021, Page(s) 094401, ISSN 0004-6280
Publisher: University of Chicago Press
DOI: 10.1088/1538-3873/abfe04

Evolutionary and structural analyses of the NADPH oxidase family in eukaryotes reveal an initial calcium dependency

Author(s): Marta Massari; Callum R. Nicoll; Sara Marchese; Andrea Mattevi; Maria Laura Mascotti
Published in: Redox Biology, Issue volume 56, October, 2022, ISSN 2213-2317
Publisher: Elsevier BV
DOI: 10.1016/j.redox.2022.102436

Turning Enantiomeric Relationships into Diastereomeric Ones: Self-Resolving α-Ureidophosphonates and Their Organocatalytic Enantioselective Synthesis

Author(s): Vanda Dašková; Damián Padín; Ben L. Feringa
Published in: Journal of the American Chemical Society, Issue 8, weekly, 2022, ISSN 1520-5126
Publisher: American Chemical Society
DOI: 10.1021/jacs.2c10911

Expulsion mechanism of the substrate-translocating subunit in ECF transporters

Author(s): Chancievan Thangaratnarajah, Mark Nijland, Luís Borges-Araújo, Aike Jeucken, Jan Rheinberger, Siewert J. Marrink, Paulo C. T. Souza, Cristina Paulino & Dirk J. Slotboom
Published in: Nature Communications, Issue issue 1, article 4484, 2023, Page(s) 14 pages, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-40266-1

Investigating the biochemical signatures and physiological roles of the FMO family using molecular phylogeny

Author(s): C. R. Nicoll, M. L. Mascotti
Published in: BBA Advances, Issue volume 4, 2023, Page(s) article 100108, ISSN 2667-1603
Publisher: Elsevier
DOI: 10.1016/j.bbadva.2023.100108

Pathogenic variants of the mitochondrial aspartate/glutamate carrier causing citrin deficiency

Author(s): Sotiria Tavoulari, Denis Lacabanne, Chancievan Thangaratnarajah, Edmund R S Kunji*
Published in: Trends in endocrinology and metabolism, Issue vol 33, issue 8, 2022, Page(s) 539-553, ISSN 1043-2760
Publisher: Elsevier BV
DOI: 10.1016/j.tem.2022.05.002

One Soai reaction, two mechanisms?

Author(s): Yannick Geiger
Published in: Chemical Society Reviews, Issue 14604744, 2022, ISSN 1460-4744
Publisher: Royal Society of Chemistry
DOI: 10.1039/d1cs01038g

Light-driven eco-evolutionary dynamics in a synthetic replicator system

Author(s): Kai Liu, Alex Blokhuis, Chris van Ewijk, Armin Kiani, Juntian Wu, Wouter H Roos, Sijbren Otto
Published in: Nature Chemistry, Issue 16, 2024, Page(s) 79–88, ISSN 1755-4330
Publisher: Nature Publishing Group
DOI: 10.1038/s41557-023-01301-2

A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds

Author(s): Stephan Rempel, Cornelius Gati, Mark Nijland, Chancie Thangaratnarajah, Alexandros Karyolaimos, Jan-Willem L. de Gier, Albert Guskov, Dirk Slotboom*
Published in: Nature, Issue vol 580 issue 7803, 2020, Page(s) 409-412, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-020-2072-8

An X-ray spectroscopy study of structural stability of superhydrogenated pyrene derivatives

Author(s): Yining Huo, Mónica Espinoza Cangahuala, Vicente Zamudio-Bayer, Marcelo Goulart, Markus Kubin, Martin Timm, J Tobias Lau, Bernd von Issendorff, Ronnie Hoekstra, Shirin Faraji, Thomas Schlathölter
Published in: Monthly Notices of the Royal Astronomical Society, Issue 523 /1, 2023, Page(s) 865-875, ISSN 1365-2966
Publisher: Oxford University Press
DOI: 10.1093/mnras/stad1341

Chemical Cascading Between Polymersomal Nanoreactor Populations

Author(s): Yigit Altay, Antoni Llopis-Lorente, Loai K. E. A. Abdelmohsen, Jan C.M. van Hest
Published in: Macromolecular Chemistry and Physics, Issue Volume 224, Issue 1, 2023, ISSN 1022-1352
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/macp.202200269

Exploring Intra- and Inter-Regional Interactions in the IDP α-Synuclein Using smFRET and MD Simulations

Author(s): Gobert Heesink; Mirjam J. Marseille; Mohammad A. A. Fakhree; Mark D. Driver; Kirsten A. van Leijenhorst-Groener; Patrick R. Onck; Christian Blum; Mireille M.A.E. Claessens
Published in: Biomacromolecules, Issue volume 24, issue 8, 2023, Page(s) 3680–3688, ISSN 1525-7797
Publisher: American Chemical Society
DOI: 10.1021/acs.biomac.3c00404

Residues Ala420 and Glu466 allow for efficient catalysis of syringyl derivatives

Author(s): Daniel Eggerichs; Nils Weindorf; Maria Laura Mascotti; Natalie Welzel; Marco W. Fraaije; Dirk Tischler
Published in: The Journal of Biological Chemistry, Issue volume 13, issue 7, 2023, ISSN 0021-9258
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1016/j.jbc.2023.104898

In vitro and in vivo evaluation of clinically-approved ionizable cationic lipids shows divergent results between mRNA transfection and vaccine efficacy

Author(s): Oscar Escalona-Rayo , Ye Zeng , Renzo A. Knol , Thomas J.F. Kock , Dennis Aschmann , Bram Slütter , Alexander Kros
Published in: Biomedicine & Pharmacotherapy, Issue vol 165, 2023
Publisher: Elsevier Masson SAS
DOI: 10.1016/j.biopha.2023.115065

Water content of rocky exoplanets in the habitable zone

Author(s): Ádám Boldog, Vera Dobos, László L. Kiss, Marijn van der Perk and Amy C. Barr
Published in: Astronomy & Astrophysics, Issue Volume 681,, 2024, Page(s) 13 pages
Publisher: EDP Sciences
DOI: 10.1051/0004-6361/202346988

Hybrid Biodegradable Nanomotors through Compartmentalized Synthesis

Author(s): Imke AB Pijpers, Shoupeng Cao, Antoni Llopis-Lorente, Jianzhi Zhu, Shidong Song, Rick RM Joosten, Fenghua Meng, Heiner Friedrich, David S Williams, Samuel Sánchez, Jan CM van Hest, Loai KEA Abdelmohsen
Published in: Nano Letters, Issue issue 20 / 6, 2020, Page(s) 4472-4480
Publisher: American Chemical Society
DOI: 10.1021/acs.nanolett.0c01268

PyATMOS: A Scalable Grid of Hypothetical Planetary Atmospheres

Author(s): Chopra, Aditya ; Bell, Aaron C ; Fawcett, William ; Talebi, Rodd ; Angerhausen, Daniel ; Güneş Baydin, Atılım ; Berea, Anamaria ; Cabrol, Nathalie A. ; Kempes, Christopher ; Mascaro, Massimo
Published in: astro-ph > arXiv:2308.10624, 2023, Page(s) 9 pages
Publisher: Astrophysics Data System
DOI: 10.48550/arxiv.2308.10624

Io as an Analog for Tidally Heated Exoplanets

Author(s): Amy C. Barr, Ramon Brasser, Vera Dobos & Lynnae C. Quick
Published in: Astrophysics and Space Science Library, Issue ASSL,volume 468), 2023, ISSN 2214-7985
Publisher: Springer

Resurrecting Enzymes by Ancestral Sequence Reconstruction

Author(s): Maria Laura Mascotti
Published in: Methods in Molecular Biology book series, 2021, ISBN 978-1-0716-1826-4
Publisher: Humana, New York, NY
DOI: 10.1007/978-1-0716-1826-4_7

RNA-Protein Interactions in Molecular Life and Health: A Computational Approach

Author(s): Mark D. Driver, Patrick R. Onck
Published in: Biophysical Journal, Issue 120/3, 2021, Page(s) 81a, ISSN 0006-3495
Publisher: Biophysical Society
DOI: 10.1016/j.bpj.2020.11.702

EXO-ATMOS: A scalable grid of hypothetical planetary atmospheres

Author(s): Chopra, Aditya ; Bell, Aaron ; Fawcett, William ; Talebi, Rodd ; Angerhausen, Daniel ; Güneş Baydin, Atılım ; Berea, Anamaria ; Cabrol, Nathalie A. ; Kempes, Christopher P. ; Mascaro, Massimo
Published in: 14th Europlanet Science Congress 2020, held virtually, 21 September 2020 - 9 October, 2020., 2020
Publisher: Astrophysics Data System
DOI: 10.5194/epsc2020-664

The Biological Overview Effect

Author(s): Lineweaver, Charles H. ; Chopra, Aditya
Published in: Astrophysics and Space Science Proceedings, Issue volume 58, 2021, ISBN 978-3-030-70482-7
Publisher: springer
DOI: 10.1007/978-3-030-70482-7_11

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