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The origin and evolution of Life in the universe

Deliverables

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Publications

Quorum sensing communication between lipid-based artificial cells

Author(s): Antoni Llopis-Lorente; Bastiaan C. Buddingh'; R. Martínez-Máñez; Jan C. M. van Hest; Loai K. E. Abdelmohsen
Published in: Chemical Communications, 59(5), 579 - 582. Royal Society of Chemistry, Issue Volume 59, Issue 5, 2022, Page(s) 579 - 582, ISSN 1359-7345
Publisher: Royal Society of Chemistry
DOI: 10.1039/d2cc05367e

On the diversity of F 420 ‐dependent oxidoreductases: A sequence‐ and structure‐based classification

Author(s): María Laura Mascotti, Maximiliano Juri Ayub, Marco W. Fraaije
Published in: Proteins: Structure, Function, and Bioinformatics, Issue 89/11, 2021, Page(s) 1497-1507, ISSN 0887-3585
Publisher: Wiley-Liss Inc
DOI: 10.1002/prot.26170

Mutational and structural analysis of an ancestral fungal dye-decolorizing peroxidase

Author(s): Ulises A. Zitare; Ulises A. Zitare; Mohamed H. Habib; Mohamed H. Habib; Henriëtte J. Rozeboom; María Laura Mascotti; María Laura Mascotti; Smilja Todorovic; Marco W. Fraaije
Published in: The FEBS Journal, Issue VOLUME=288;ISSUE=11, 2020, Page(s) TARTPAGE=3602;ENDPAGE=3618, ISSN 1742-464X
Publisher: Blackwell Publishing Inc.
DOI: 10.5281/zenodo.7190636

Temporal segregation of biosynthetic processes is responsible for metabolic oscillations during the budding yeast cell cycle

Author(s): Vakil Takhaveev; Serdar Özsezen; Edward N. Smith; Andre Zylstra; Marten L. Chaillet; Haoqi Chen; Alexandros Papagiannakis; Andreas Milias-Argeitis; Matthias Heinemann
Published in: Nature Metabolism, Issue volume 5, issue 2, 2023, Page(s) 294-313, ISSN 2522-5812
Publisher: Nature Research
DOI: 10.3929/ethz-b-000601600

Bacterial multi-solute transporters

Author(s): D J Slotboom*, T W Ettema, M Nijland, C Thangaratnarajah
Published in: FEBS Letters, Issue vol 594, issue 23, 2020, Page(s) 3898-3907, ISSN 1742-4658
Publisher: Wiley
DOI: 10.1002/1873-3468.13912

Metabolic dynamics during the cell cycle

Author(s): Andre Zylstra, Matthias Heinemann
Published in: Current Opinion in Systems Biology, Issue 24523100, 2022, ISSN 2452-3100
Publisher: Elsevier
DOI: 10.1016/j.coisb.2022.100415

Mutational and structural analysis of an ancestral fungal dye‐decolorizing peroxidase

Author(s): Ulises A. Zitare, Mohamed H. Habib, Henriette Rozeboom, Maria L. Mascotti, Smilja Todorovic, Marco W. Fraaije
Published in: The FEBS Journal, 2020, ISSN 1742-464X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/febs.15687

A target list for searching for habitable exomoons

Author(s): Vera Dobos, András Haris, Inga E. E. Kamp, Floris F. S. van der Tak
Published in: Monthly Notices of the Royal Astronomical Society, Issue 13652966, 2022, Page(s) 5290–5298, ISSN 1365-2966
Publisher: Oxford University Press
DOI: 10.1093/mnras/stac1180

Engineering chemical communication between micro/nanosystems

Author(s): Beatriz de Luis, Antoni Llopis-Lorente, Félix Sancenón and Ramón Martínez-Máñez
Published in: Chemical Society Reviews, Issue 03060012, 2021, Page(s) 8829-8856, ISSN 0306-0012
Publisher: Royal Society of Chemistry
DOI: 10.1039/d0cs01048k

Long-term tidal evolution of the TRAPPIST-1 system

Author(s): R. Brasser, G. Pichierri, V. Dobos, A. C. Barr
Published in: Monthly Notices of the Royal Astronomical Society, Issue 13652966, 2022, Page(s) 2373–2385, ISSN 1365-2966
Publisher: Oxford University Press
DOI: 10.1093/mnras/stac1907

All-Photochemical Rotation of Molecular Motors with a Phosphorus Stereoelement

Author(s): Boursalian, Gregory B.; Nijboer, Eise R.; Dorel, Ruth; Pfeifer, Lukas; Markovitch, Omer; Blokhuis, Alex; Feringa, Ben L.
Published in: American Chemical Society, Issue 142, 39, 2020, Page(s) 16868–16876, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/jacs.0c08249

A conserved sequence motif in the E. coli soluble FAD-containing pyridine nucleotide transhydrogenase is important for reaction efficiency

Author(s): Michele Partipilo; Guang Yang; Maria Laura Mascotti; Hein J. Wijma; Dirk Jan Slotboom; Marco W. Fraaije
Published in: The Journal of Biological Chemistry, Issue 298, issue 9, 2022, ISSN 0021-9258
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1016/j.jbc.2022.102304

RNA-Protein Interactions in Molecular Life and Health: A Computational Approach

Author(s): Driver, Mark D.; Onck, Patrick R.
Published in: Biophysical Journal, 120(3), 81A - 81A. CELL PRESS, Issue 120, 2021, Page(s) 81A--81A, ISSN 0006-3495
Publisher: Biophysical Society
DOI: 10.1016/j.bpj.2020.11.702

Evolution of enzyme functionality in the flavin-containing monooxygenases

Author(s): Gautier Bailleul, Guang Yang, Callum R Nicoll, Andrea Mattevi, Marco W Fraaije, Maria Laura Mascotti
Published in: Nature Communications, Issue '14:1042, 2023, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-36756-x

Cryo-EM studies of membrane proteins at 200 keV

Author(s): Chancievan Thangaratnarajah, Jan Rheinberger, Cristina Paulino
Published in: Current Opinion in Structural Biology, Issue volume 76, 2022, ISSN 1879-033X
Publisher: Elsevier
DOI: 10.1016/j.sbi.2022.102440

Motility of Active Microparticles in Cell-Sized Lipid Vesicles

Author(s): Shidong Song; Antoni Llopis-Lorente; Alexander F. Mason; Loai K. E. A. Abdelmohsen; Jan C. M. van Hest
Published in: ournal of the American Chemical Society, Issue volume 144, issue 30, 2022, Page(s) 13831–13838, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/jacs.2c05232

Ancestral reconstruction of mammalian FMO1 enables structural determination, revealing unique features that explain its catalytic properties

Author(s): Gautier Bailleul, Callum R. Nicoll, María Laura Mascotti, Andrea Mattevi, Marco W. Fraaije
Published in: Journal of Biological Chemistry, Issue 296, 2021, Page(s) 100221, ISSN 0021-9258
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1074/jbc.ra120.016297

Horseradish Peroxidase-Functionalized Gold Nanoconjugates for Breast Cancer Treatment Based on Enzyme Prodrug Therapy

Author(s): Gema Vivo-Llorca; Ángela Morellá-Aucejo; Alba García-Fernández; Paula Díez; Antoni Llopis-Lorente; Mar Orzáez; Ramón Martínez-Máñez
Published in: International Journal of Nanomedicine, Issue 17, 2022, Page(s) Pages 409 - 422, ISSN 1176-9114
Publisher: Dove Medical Press Ltd
DOI: 10.2147/ijn.s323802

Stoichiometry alone can steer supramolecular systems on complex free energy surfaces with high selectivity

Author(s): Dávid Komáromy; Theodora D. Tiemersma-Wegman; Johan Kemmink; Giuseppe Portale; Paul R. Adamski; Alex Blokhuis; Friso S. Aalbers; Ivana Marić; Guillermo Monreal Santiago; Jim Ottelé; Ankush Sood; Vittorio Saggiomo; Bin Liu; Pieter van der Meulen; Sijbren Otto
Published in: Chem, 7(7), 1933 - 1951, Issue Volume 7, Issue 7,, 2021, Page(s) Pages 1933 - 1951, ISSN 2451-9308
Publisher: Elsevier
DOI: 10.1016/j.chempr.2021.05.020

Impacts of Severe Tropical Cyclone Olwyn and the biogeomorphic response, Hamelin Pool, Shark Bay, Western Australia

Author(s): Thérèse E. Morris, Stephen Morris, Peter R.C.S. Fearns, Aditya Chopra, Mehrooz F. Aspandair, Lindsay B. Collins, Micheal J. O'Leary, Pieter T. Visscher
Published in: The Depositional Record, Issue 20554877, 2022, Page(s) 786-828, ISSN 2055-4877
Publisher: Wiley
DOI: 10.1002/dep2.183

Switching the Mode of Drug Release from a Reaction-Coupled Low-Molecular-Weight Gelator System by Altering Its Reaction Pathway

Author(s): Willem E. M. Noteborn; Sandeepa K. Vittala; Maria Broto Torredemer; Chandan Maity; Frank Versluis; Rienk Eelkema; Roxanne E. Kieltyka
Published in: Biomacromolecules, 24(1), 377 - 386. AMER CHEMICAL SOC, Issue 24, 2023, ISSN 1525-7797
Publisher: American Chemical Society
DOI: 10.1021/acs.biomac.2c01197

The SLC25 Carrier Family: Important Transport Proteins in Mitochondrial Physiology and Pathology

Author(s): Edmund R. S. Kunji, Martin S. King, Jonathan J. Ruprecht, Chancievan Thangaratnarajah
Published in: Physiology, Issue 35/5, 2020, Page(s) 302-327, ISSN 1548-9213
Publisher: American Physiological Society
DOI: 10.1152/physiol.00009.2020

Insights into the bilayer-mediated toppling mechanism of a folate-specific ECF transporter by cryo-EM

Author(s): Chancievan Thangaratnarajah, Jan Rheinberger, Cristina Paulino, Dirk J. Slotboom
Published in: Proceedings of the National Academy of Sciences, Issue 118/34, 2021, Page(s) e2105014118, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2105014118

"Soft-x-ray spectroscopy of <mml:math xmlns:mml=""http://www.w3.org/1998/Math/MathML""><mml:msup><mml:mi mathvariant=""normal"">coronene</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:math> and <mml:math xmlns:mml=""http://www.w3.org/1998/Math/MathML""><mml:msup><mml:mrow><mml:mo>(</mml:mo><mml:mtext>coronene</mml:mtext><mml:mo>+</mml:mo><mml:mi mathvariant=""normal"">H</mml:mi><mml:mo>)</mml:mo></mml:mrow><mm"

Author(s): Yining Huo; Mónica K. Espinoza Cangahuala; Marcelo Goulart; Vicente Zamudio-Bayer; Markus Kubin; Martin Timm; J. Tobias Lau; Bernd von Issendorff; Ronnie Hoekstra; Shirin Faraji; Thomas Schlathölter
Published in: Physical Review A - Atomic, Molecular, and Optical Physics, Issue volume 106, issue 6, 2022, Page(s) 11, ISSN 2469-9926
Publisher: American Physical Society
DOI: 10.1103/physreva.106.063104

Survival of Exomoons Around Exoplanets

Author(s): V. Dobos, S. Charnoz, A. Pál, A. Roque-Bernard, Gy. M. Szabó
Published in: Publications of the Astronomical Society of the Pacific, Issue 133/1027, 2021, Page(s) 094401, ISSN 0004-6280
Publisher: University of Chicago Press
DOI: 10.1088/1538-3873/abfe04

Evolutionary and structural analyses of the NADPH oxidase family in eukaryotes reveal an initial calcium dependency

Author(s): Marta Massari; Callum R. Nicoll; Sara Marchese; Andrea Mattevi; Maria Laura Mascotti
Published in: Redox Biology, Issue volume 56, October, 2022, ISSN 2213-2317
Publisher: Elsevier BV
DOI: 10.1016/j.redox.2022.102436

Turning Enantiomeric Relationships into Diastereomeric Ones: Self-Resolving α-Ureidophosphonates and Their Organocatalytic Enantioselective Synthesis

Author(s): Vanda Dašková; Damián Padín; Ben L. Feringa
Published in: Journal of the American Chemical Society, Issue 8, weekly, 2022, ISSN 1520-5126
Publisher: American Chemical Society
DOI: 10.1021/jacs.2c10911

One Soai reaction, two mechanisms?

Author(s): Yannick Geiger
Published in: Chemical Society Reviews, Issue 14604744, 2022, ISSN 1460-4744
Publisher: Royal Society of Chemistry
DOI: 10.1039/d1cs01038g

An X-ray spectroscopy study of structural stability of superhydrogenated pyrene derivatives

Author(s): Yining Huo, Mónica Espinoza Cangahuala, Vicente Zamudio-Bayer, Marcelo Goulart, Markus Kubin, Martin Timm, J Tobias Lau, Bernd von Issendorff, Ronnie Hoekstra, Shirin Faraji, Thomas Schlathölter
Published in: Monthly Notices of the Royal Astronomical Society, Issue 523 /1, 2023, Page(s) 865-875, ISSN 1365-2966
Publisher: Oxford University Press
DOI: 10.1093/mnras/stad1341

Chemical Cascading Between Polymersomal Nanoreactor Populations

Author(s): Yigit Altay, Antoni Llopis-Lorente, Loai K. E. A. Abdelmohsen, Jan C.M. van Hest
Published in: Macromolecular Chemistry and Physics, Issue Volume 224, Issue 1, 2023, ISSN 1022-1352
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/macp.202200269

Io as an Analog for Tidally Heated Exoplanets

Author(s): Amy C. Barr, Ramon Brasser, Vera Dobos & Lynnae C. Quick
Published in: Astrophysics and Space Science Library, Issue ASSL,volume 468), 2023, ISSN 2214-7985
Publisher: Springer

Resurrecting Enzymes by Ancestral Sequence Reconstruction

Author(s): Maria Laura Mascotti
Published in: Methods in Molecular Biology book series, 2021, ISBN 978-1-0716-1826-4
Publisher: Humana, New York, NY
DOI: 10.1007/978-1-0716-1826-4_7

RNA-Protein Interactions in Molecular Life and Health: A Computational Approach

Author(s): Mark D. Driver, Patrick R. Onck
Published in: Biophysical Journal, Issue 120/3, 2021, Page(s) 81a, ISSN 0006-3495
Publisher: Biophysical Society
DOI: 10.1016/j.bpj.2020.11.702

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