Centre for New Methods in Computational Diagnostics and Personalised Therapy

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Statute of the Centre

The statute will define the legal regulations and organization of the Centre, and will be a notarized document approved by the appropriate authority.

Ecosystem Analysis

Analysis of current framework conditions for the development of in silico medicine in Poland, challenges and opportunities of the system.

Spin-off Culture Principles

A report on the principles of the spinoff and startup culture to be incubated at Sano towards the active selfsustainability model

IP Management Policy

A detailed plan of IP Management with focus on in silico medicine techniques and research data developed by Sano

Human Talent Management Policies

Document describing the best practices on human talent management policies to guarantee the success of Sano.

Research Exchange Programme and Travel Policies

A detailed description of the travel policies with the special focus on research exchange programme.

Research and Development Evaluation Review Report

The final evaluation of R&D activities and results of Sano, with recommendations towards sustainability.

Project Website

A modern and responsive institutional website, providing a single entry point to all information about the Centre.

Publications

Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries

Author(s): A. Crimi, S. Bakas
Published in: Lecture Notes in Computer Science (LNCS, volume 12963), BrainLes: International MICCAI Brainlesion Workshop, 2022
Publisher: Springer Nature
DOI: 10.1007/978-3-031-08999-2

Artificial intelligence in the diagnosis of necrotising enterocolitis in newborns

Author(s): Arkadiusz Sitek, Joanna Seliga-Siwecka, Szymon Płotka, Michal K. Grzeszczyk, Szymon Seliga, Krzysztof Włodarczyk, Renata Bokiniec
Published in: (Nature) Pediatric Research, 2022, ISSN 0031-3998
Publisher: Lippincott Williams & Wilkins Ltd.
DOI: 10.1038/s41390-022-02322-2

Improvements in Quality Control and Library Preparation for Targeted Sequencing Allowed Detection of Potentially Pathogenic Alterations in Circulating Cell-Free DNA Derived from Plasma of Brain Tumor Patients

Author(s): Paulina Szadkowska,Adria-Jaume Roura,Bartosz Wojtas,Kamil Wojnicki,Sabina Licholai,Tomasz Waller,Tomasz Gubala,Kacper Zukowski,Michal Karpeta,Kinga Wilkus,Wojciech Kaspera,Sergiusz Nawrocki andBozena Kaminska
Published in: Cancers, 2022, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14163902

The EurValve model execution environment

Author(s): M. Bubak, K. Czechowicz, T. Gubała, D. R. Hose, M. Kasztelnik, M. Malawski, J. Meizner, P. Nowakowski, S. Wood
Published in: Interface Focus, Issue 11, 2021, Page(s) 20200006, ISSN 2042-8898
Publisher: Royal Society Publishing
DOI: 10.1098/rsfs.2020.0006

Preface to the Special Issue on Software Engineering

Author(s): Marian Bubak, Maciej Malawski, Renata G. Słota
Published in: Computing and Informatics, 2021, ISSN 1335-9150
Publisher: Slovak Academic Press Ltd.
DOI: 10.31577/cai_2021_4_729

Emergent Computations in Trained Neural Networks and Real Brains

Author(s): Néstor Parga, Luis Serrano-Fernández, and Joan Falcó-Roget
Published in: Journal of Instrumentation, 2023, ISSN 1748-0221
Publisher: Institute of Physics
DOI: 10.1088/1748-0221/18/02/c02060

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

Author(s): Cameron Martino, Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia, Feryel Soualmia, Alex E. Clark, Aaron F. Garretson, Clarisse A. Marotz, Se Jin Song, Stephen Wandro, Livia S. Zaramela, Rodolfo A. Salido, Qiyun Zhu, Erick Armingol, Yoshiki Vázquez-Baeza, Daniel McDonald, James T. Sorrentino, Bryn Taylor, Pedro Belda-Ferre, Promi Das, Farhana Ali, Che
Published in: mBio, 2025, ISSN 2150-7511
Publisher: ASM
DOI: 10.1128/mbio.04015-24

MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI

Author(s): Nancy R. Newlin, Kurt Schilling, Serge Koudoro, Bramsh Qamar Chandio, Praitayini Kanakaraj, Daniel Moyer, Claire E. Kelly, Sila Genc, Jian Chen, Joseph Yuan-Mou Yang, Ye Wu, Yifei He, Jiawei Zhang, Qingrun Zeng, Fan Zhang, Nagesh Adluru, Vishwesh Nath, Sudhir Pathak, Walter Schneider, Anurag Gade, Yogesh Rathi, Tom Hendriks, Anna Vilanova, Maxime Chamberland, Tomasz Pieciak, Dominika Ciupek, Anton
Published in: Machine Learning for Biomedical Imaging, Issue 2, 2025, Page(s) 1083-1105, ISSN 2766-905X
Publisher: MELBA
DOI: 10.59275/j.melba.2024-9c68

Quaternion double random phase encoding for privacy-preserving cancelable biometrics

Author(s): Mahmoud Nasr, Adam Piórkowski, Fathi E. Abd El-Samie
Published in: Multimedia Tools and Applications, Issue 83, 2024, Page(s) 85065-85078, ISSN 1573-7721
Publisher: Springer
DOI: 10.1007/s11042-024-18621-1

Functional and structural reorganization in brain tumors: a machine learning approach using desynchronized functional oscillations

Author(s): Joan Falcó-Roget, Alberto Cacciola, Fabio Sambataro, Alessandro Crimi
Published in: Communications Biology, Issue 7, 2024, ISSN 2399-3642
Publisher: Springer Nature
DOI: 10.1038/s42003-024-06119-3

End-to-End Stroke Imaging Analysis Using Effective Connectivity and Interpretable Artificial Intelligence

Author(s): Wojciech Ciezobka, Joan Falcó-Roget, Cemal Koba, Alessandro Crimi
Published in: IEEE Access, Issue 13, 2025, Page(s) 10227-10239, ISSN 2169-3536
Publisher: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2025.3529179

Minimal data requirement for realistic endoscopic image generation with Stable Diffusion

Author(s): Joanna Kaleta, Diego Dall’Alba, Szymon Płotka, Przemysław Korzeniowski
Published in: International Journal of Computer Assisted Radiology and Surgery, Issue 19, 2024, Page(s) 531-539, ISSN 1861-6429
Publisher: Springer Nature
DOI: 10.1007/s11548-023-03030-w

BabyNet＋＋: Fetal birth weight prediction using biometry multimodal data acquired less than 24 hours before delivery

Author(s): Szymon Płotka, Michal K. Grzeszczyk, Robert Brawura-Biskupski-Samaha, Paweł Gutaj, Michał Lipa, Tomasz Trzciński, Ivana Išgum, Clara I. Sánchez, Arkadiusz Sitek
Published in: Computers in Biology and Medicine, Issue 167, 2024, Page(s) 107602, ISSN 0010-4825
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.compbiomed.2023.107602

A note on “Individual differences, missing sulci, and nomenclature: A comment on ‘On presentation of the human cerebral sulci from inside the cerebrum’”

Author(s): Wieslaw L. Nowinski
Published in: Journal of Anatomy, 2023, ISSN 1469-7580
Publisher: Wiley
DOI: 10.1111/joa.13930

Altered longitudinal structural connectome in pediatric mild traumatic brain injury: an A-CAP study

Author(s): Ashley Ware, Adrian Onicas et al
Published in: Brain Communications, 2023, ISSN 2632-1297
Publisher: Oxford University Press
DOI: 10.1093/braincomms/fcad173

Computing performance requirements for web service compositions

Author(s): Antonio García-Domínguez , Francisco Palomo-Lozano , Inmaculada Medina-Bulo, Alfredo Ibias , Manuel Núñez
Published in: Computer Standards & Interfaces, 2023, ISSN 0920-5489
Publisher: Elsevier BV
DOI: 10.1016/j.csi.2022.103664

Femoral neck strain prediction during level walking using a combined musculoskeletal and finite element model approach

Author(s): Zainab Altai; Erica Montefiori; Bart van Veen; Margaret Paggiosi; Eugene V. McCloskey; Marco Viceconti; Claudia Mazzà; Xinshan Li
Published in: PLoS ONE, Issue 2, 2021, ISSN 1549-1277
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0245121

Reshaped functional connectivity gradients in acute ischemic stroke

Author(s): Cemal Koba, Joan Falcó-Roget, Alessandro Crimi
Published in: NeuroImage: Clinical, Issue 45, 2025, Page(s) 103755, ISSN 2213-1582
Publisher: Elsevier BV
DOI: 10.1016/j.nicl.2025.103755

Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results

Author(s): Kelly Payette, Céline Steger, Roxane Licandro, Priscille De Dumast, Hongwei Bran Li, Matthew Barkovich, Liu Li, Maik Dannecker, Chen Chen, Cheng Ouyang, Niccolò McConnell, Alina Miron, Yongmin Li, Alena Uus, Irina Grigorescu, Paula Ramirez Gilliland, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Haoyu Wang, Ziyan Huang, Jin Ye, Mireia Alenyà, Valentin Comte, Oscar Camara, Jean-Bap
Published in: IEEE Transactions on Medical Imaging, 2024, Page(s) 1-1, ISSN 0278-0062
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tmi.2024.3485554

Serverless Computing for Scientific Applications

Author(s): M. Malawski, B. Balis
Published in: IEEE Internet Computing, Issue ( Volume: 26, Issue: 4, 01 July-Aug. 2022), 2022, ISSN 1089-7801
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mic.2022.3168810

COVID-19 Drug Repurposing: a Network-based Framework for Exploring BioMedical Literature and Clinical Trials for Possible Treatments

Author(s): Ahmed Abdeen Hamed *, Tamer E. Fandy, Karolina L. Tkaczuk, Byung Suk Lee
Published in: Pharmaceutics, 2022, ISSN 1999-4923
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14030567

Relating Global and Local Connectome Changes to Dementia and Targeted Gene Expression in Alzheimer's Disease

Author(s): Samar S. M. Elsheikh, Emile R. Chimusa, Alzheimer's Disease Neuroimaging Initiative, Nicola J. Mulder and Alessandro Crimi
Published in: Frontiers in Human Neuroscience, 2021, ISSN 1662-5161
Publisher: Frontiers Research Foundation
DOI: 10.3389/fnhum.2021.761424

CACTUS: A Comprehensive Abstraction and Classification Tool for Uncovering Structures

Author(s): Luca Gherardini, Varun Ravi Varma, Karol Capała, Roger Woods, Jose Sousa
Published in: ACM Transactions on Intelligent Systems and Technology, Issue 15, 2024, Page(s) 1-23, ISSN 2157-6904
Publisher: Association for Computing Machinery (ACM)
DOI: 10.1145/3649459

Squeeziness for Non-Deterministic Systems

Author(s): Alfredo Ibias, Manuel Núñez
Published in: Information and Software Technology, 2023, ISSN 0950-5849
Publisher: Elsevier BV
DOI: 10.1016/j.infsof.2023.107173

Vascular phenotypes in early hypertension

Author(s): Eleanor Murray, Christian Delles, Patryk Orzechowski, Pawel RENC, Arkadiusz SITEK, Joost Wagenaar, and Tomasz Guzik
Published in: Journal of Human Hypertension, 2022, ISSN 0950-9240
Publisher: Nature Publishing Group
DOI: 10.1038/s41371-022-00794-7

Prediction of misfolded proteins spreading in Alzheimer’s disease using machine learning and spreading models

Author(s): Luca Gherardini, Aleksandra Zajdel, Lorenzo Pini, Alessandro Crimi
Published in: Cerebral Cortex, Issue 33, 2023, Page(s) 11471-11485, ISSN 1047-3211
Publisher: Oxford University Press
DOI: 10.1093/cercor/bhad380

"""SATO (IDEAS expAnded wiTh BCIO): workflow for designers of patient-centered mobile health behaviourchange intervention applications"""

Author(s): Aneta Lisowska, Szymon Wilk, Mor Peleg
Published in: Journal of Biomedical Informatics, 2023, ISSN 1532-0464
Publisher: Academic Press
DOI: 10.1016/j.jbi.2022.104276

Current Trends in Software Engineering Bachelor Theses

Author(s): Jacek Dajda, Michał Idzik, Jakub Sroka, Mikołaj Sikora Wiktor Pawłowski, Maciej Smo lka, Przemysław Jabłecki Filip Ślazyk, Maciej Malawski, Emilia Majerz Aleksandra Pasternak, Witold Dzwinel
Published in: Computing and Informatics, 2021, ISSN 1335-9150
Publisher: Slovak Academic Press Ltd.
DOI: 10.31577/cai_2021_4_930

Ab initio protein structure prediction – the necessary presence of external force field as it is delivered by Hsp40 chaperone

Author(s): Irena Roterman, K Stapor, L Konieczny
Published in: BMC Bioinformatics, Issue 24, 418, 2023, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.21203/rs.3.rs-3212848/v1

Connexins and Pannexins—Similarities and Differences According to the FOD-M Model

Author(s): Irena Roterman, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny
Published in: Biomedicines, Issue 10, 2024, Page(s) 1504, ISSN 2227-9059
Publisher: MDPI
DOI: 10.3390/biomedicines10071504

Safeguarding authenticity for mitigating the harms of generative AI: Issues, research agenda, and policies for detection, fact-checking, and ethical AI

Author(s): Ahmed Abdeen Hamed, Malgorzata Zachara-Szymanska, Xindong Wu
Published in: iScience, Issue 27, 2025, Page(s) 108782, ISSN 2589-0042
Publisher: Cell Press
DOI: 10.1016/j.isci.2024.108782

Real-time placental vessel segmentation in fetoscopic laser surgery for Twin-to-Twin Transfusion Syndrome

Author(s): Szymon Płotka, Tomasz Szczepański, Paula Szenejko, Przemysław Korzeniowski, Jesús Rodriguez Calvo, Asma Khalil, Alireza Shamshirsaz, Robert Brawura-Biskupski-Samaha, Ivana Išgum, Clara I. Sánchez, Arkadiusz Sitek
Published in: Medical Image Analysis, Issue 99, 2025, Page(s) 103330, ISSN 1361-8415
Publisher: Elsevier BV
DOI: 10.1016/j.media.2024.103330

Artificial Intelligence in PET: an Industry Perspective

Author(s): Sitek, Arkadiusz; Ahn, Sangtae; Asma, Evren; Chandler, Adam; Ihsani, Alvin; Prevrhal, Sven; Rahmim, Arman; Saboury, Babak; Thielemans, Kris
Published in: PET Clinics, Issue August 03, 2021, 2021, ISSN 1556-8598
Publisher: Elsevier Saunders
DOI: 10.1016/j.cpet.2021.06.006

Dependence of Protein Structure on Environment: FOD Model Applied to Membrane Proteins

Author(s): Irena Roterman, Katarzyna Stapor, Krzysztof Gądek, Tomasz Gubała , Piotr Nowakowski, Piotr Fabian and Leszek Konieczny
Published in: Membrane Biological Function in Health and Disease, Issue Membranes 2022, 12(1), 50, 2021, ISSN 2077-0375
Publisher: Molecular Diversity Preservation International
DOI: 10.3390/membranes12010050

Modelling The Hemodynamics of Coronary Ischemia

Author(s): Baraikan, Abdulaziz Al, Krzysztof Czechowicz, Paul D. Morris, Ian Halliday, Rebecca C. Gosling, Julian P. Gunn, Andrew J. Narracott, Gareth Williams, Pankaj Garg, Maciej Malawski, and et al.
Published in: Fluids, 2023, ISSN 2311-5521
Publisher: MDPI
DOI: 10.3390/fluids8050159

Storage estimation in morphology modeling of the human whole brain at the nanoscale

Author(s): Wieslaw L. Nowinski
Published in: Journal of Computational Science, Issue 81, 2024, Page(s) 102346, ISSN 1877-7503
Publisher: Elsevier BV
DOI: 10.1016/j.jocs.2024.102346

GraphTar: applying word2vec and graph neural networks to miRNA target prediction

Author(s): Jan Przybyszewski, Maciej Malawski, Sabina Lichołai
Published in: BMC Bioinformatics, Issue 24, 2023, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-023-05564-x

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge

Author(s): Gabriel Girard, Jonathan Rafael-Patiño, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak et al.
Published in: NeuroImage, 2023, ISSN 1053-8119
Publisher: Academic Press
DOI: 10.1016/j.neuroimage.2023.120231

MiR-191 as a Key Molecule in Aneurysmal Aortic Remodeling

Author(s): Sabina Lichołai, Dorota Studzińska, Hanna Plutecka, Tomasz Gubała, Wojciech Szczeklik and Marek Sanak
Published in: Biomolecules, 2021, ISSN 2218-273X
Publisher: MDPI
DOI: 10.3390/biom11111611

Toward the Observability of Cloud-Native Applications: The Overview of the State-of-the-Art

Author(s): Joanna Kosinska, Bartosz Balis, Marek Konieczny, Maciej Malawski, Slawomir Zielinski
Published in: IEEE Access, 2023, ISSN 2169-3536
Publisher: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2023.3281860

Improved myocardial blood flow estimation with residual activity correction and motion correction in 18F-flurpiridaz PET myocardial perfusion imaging

Author(s): Yuka Otaki, Serge D. Van Kriekinge, Chih-Chun Wei, Paul Kavanagh, Ananya Singh, Tejas Parekh, Marcelo Di Carli, Jamshid Maddahi, Arkadiusz Sitek, Christopher Buckley, Daniel S. Berman & Piotr J. Slomka
Published in: European Journal of Nuclear Medicine and Molecular Imaging, 2021, ISSN 1619-7070
Publisher: Springer Verlag
DOI: 10.1007/s00259-021-05643-2

Adaptation to space conditions of novel bacterial species isolated from the International Space Station revealed by functional gene annotations and comparative genome analysis

Author(s): Lukasz M. Szydlowski, Alper A. Bulbul, Anna C. Simpson, Deniz E. Kaya, Nitin K. Singh, Ugur O. Sezerman, Paweł P. Łabaj, Tomasz Kosciolek, Kasthuri Venkateswaran
Published in: Microbiome, Issue 12, 2025, Page(s) 190, ISSN 2049-2618
Publisher: Springer Nature
DOI: 10.1186/s40168-024-01916-8

The Use of Digital Coronary Phantoms for the Validation of Arterial Geometry Reconstruction and Computation of Virtual FFR

Author(s): Pederzani, Giulia, Krzysztof Czechowicz, Nada Ghorab, Paul D. Morris, Julian P. Gunn, Andrew J. Narracott, David Rodney Hose, and Ian Halliday
Published in: Fluids, 2023, ISSN 2311-5521
Publisher: MDPI
DOI: 10.3390/fluids7060201

A Stochastic Model of Translocation of Knotted Proteins

Author(s): Karol Capała, Piotr Szymczak
Published in: Physical Review E, 2022, ISSN 2470-0045
Publisher: American Physical Society
DOI: 10.1103/physreve.106.054406

SaNDA: a Small and iNcomplete Dataset Analyser

Author(s): Alfredo Ibias, Varun Ravi Varma, Karol Capała, Luca Gherardini, Jose Sousa
Published in: Information Sciences, 2023, ISSN 0020-0255
Publisher: Elsevier BV
DOI: 10.1016/j.ins.2023.119078

O pewnym modelu zawijania białek

Author(s): Marcin WIERZBIŃSKI, Karolina L. TKACZUK, Alessandro CRIMI
Published in: DeltAmi, 2023, ISSN 0137-3005
Publisher: DeltAmi

Nuclear Medicine and Artificial Intelligence: Best Practices for Algorithm Development

Author(s): Tyler J. Bradshaw, Ronald Boellaard, Joyita Dutta, Abhinav K. Jha, Paul Jacobs, Quanzheng Li, Chi Liu, Arkadiusz Sitek, Babak Saboury, Peter J.H. Scott, Piotr J. Slomka, John J. Sunderland, Richard L. Wahl, Fereshteh Yousefirizi, Sven Zuehlsdorff, Arman Rahmim and Irène Buvat
Published in: Journal of Nuclear Medicine, 2021, ISSN 0161-5505
Publisher: Kexue Chubaneshe/Science Press
DOI: 10.2967/jnumed.121.262567

Macrophage Resistance to Ionizing Radiation Exposure Is Accompanied by Decreased Cathepsin D and Increased Transferrin Receptor 1 Expression

Author(s): Ana Teresa Pinto, Ana Beatriz Machado, Hugo Osório, Marta Laranjeiro Pinto, Rui Vitorino, Gonçalo Justino, Cátia Santa, Flávia Castro, Tânia Cruz, Carla Rodrigues, Jorge Lima, José Luís R Sousa, Ana Patrícia Cardoso, Rita Figueira, Armanda Monteiro, Margarida Marques, Bruno Manadas, Jarne Pauwels, Kris Gevaert, Marc Mareel, Sónia Rocha, Tiago Duarte, Maria José Oliveira
Published in: Cancers, 2022, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers15010270

Placental vessel segmentation and registration in fetoscopy: Literature review and MICCAI FetReg2021 challenge findings

Author(s): Sophia Bano, Alessandro Casella, Francisco Vasconcelos, Abdul Qayyum, Abdesslam Benzinou, Moona Mazher, Fabrice Meriaudeau, Chiara Lena, Ilaria Anita Cintorrino, Gaia Romana De Paolis, Jessica Biagioli, Daria Grechishnikova, Jing Jiao, Bizhe Bai, Yanyan Qiao, Binod Bhattarai, Rebati Raman Gaire, Ronast Subedi, Eduard Vazquez, Szymon Płotka, Aneta Lisowska, Arkadiusz Sitek, George Attilakos, Ruwan
Published in: Medical Image Analysis, Issue 92, 2024, Page(s) 103066, ISSN 1361-8415
Publisher: Elsevier BV
DOI: 10.1016/j.media.2023.103066

Taxonomy of Acute Stroke: Imaging, Processing, and Treatment

Author(s): Wieslaw L. Nowinski
Published in: Diagnostics, Issue 14, 2024, Page(s) 1057, ISSN 2075-4418
Publisher: MDPI
DOI: 10.3390/diagnostics14101057

Comparing structure–function relationships in brain networks using EEG and fNIRS

Author(s): Rosmary Blanco, Maria Giulia Preti, Cemal Koba, Dimitri Van De Ville, Alessandro Crimi
Published in: Scientific Reports, Issue 14, 2024, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-024-79817-x

Signature Genes Selection and Functional Analysis of Astrocytoma Phenotypes: A Comparative Study

Author(s): Anna Drozdz, Caitriona E. McInerney, Kevin M. Prise, Veronica J. Spence, Jose Sousa
Published in: Cancers, Issue 16, 2025, Page(s) 3263, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers16193263

Justifying Short-Term Load Forecasts Obtained with the Use of Neural Models

Author(s): Tadeusz A. Grzeszczyk 1,Michal K. Grzeszczyk
Published in: Energies, Issue 2022, 15(5), 2022, ISSN 1996-1073
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/en15051852

Synergistic eigenanalysis of covariance and Hessian matrices for enhanced binary classification

Author(s): Agus Hartoyo, Jan Argasiński, Aleksandra Trenk, Kinga Przybylska, Anna Błasiak, Alessandro Crimi
Published in: Computers in Biology and Medicine, 2025, ISSN 1879-0534
Publisher: Elsevier
DOI: 10.48550/arxiv.2402.09281

Investigating the interaction between EEG and fNIRS: A multimodal network analysis of brain connectivity

Author(s): Rosmary Blanco, Cemal Koba, Alessandro Crimi
Published in: Journal of Computational Science, Issue 82, 2024, Page(s) 102416, ISSN 1877-7503
Publisher: Elsevier BV
DOI: 10.1016/j.jocs.2024.102416

On the Dependence of Prion and Amyloid Structure on the Folding Environment

Author(s): Irena Roterman, Katarzyna Stapor, Krzysztof Gądek, Tomasz Gubała , Piotr Nowakowski, Piotr Fabian and Leszek Konieczny
Published in: International Journal of Molecule Sciences, Issue Int. J. Mol. Sci. 2021, 22(24), 13494;, 2021, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms222413494

Effects of data transformation and model selection on feature importance in microbiome classification data

Author(s): Zuzanna Karwowska, Oliver Aasmets, null null, Mait Metspalu, Andres Metspalu, Lili Milani, Tõnu Esko, Tomasz Kosciolek, Elin Org
Published in: Microbiome, Issue 13, 2025, ISSN 2049-2618
Publisher: Springer Nature
DOI: 10.1186/s40168-024-01996-6

AI & COVID-19

Author(s): Davide Bacciu, Emanuela Girardi, Marco Maratea and Jose Sousa
Published in: Intelligenza Artificiale, 2022, ISSN 1724-8035
Publisher: IOS Press BV
DOI: 10.3233/ia-210121

On human nanoscale synaptome: Morphology modeling and storage estimation

Author(s): Wieslaw L. Nowinski
Published in: PLOS ONE, Issue 19, 2024, Page(s) e0310156, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0310156

Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome

Author(s): Stefanie Duller, Simone Vrbancic, Łukasz Szydłowski, Alexander Mahnert, Marcus Blohs, Michael Predl, Christina Kumpitsch, Verena Zrim, Christoph Högenauer, Tomasz Kosciolek, Ruth A. Schmitz, Anna Eberhard, Melanie Dragovan, Laura Schmidberger, Tamara Zurabischvili, Viktoria Weinberger, Adrian Mathias Moser, Dagmar Kolb, Dominique Pernitsch, Rokhsareh Mohammadzadeh, Torben Kühnast, Thomas Ratte
Published in: Nature Communications, Issue 15, 2024, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-024-52037-7

Comprehensive Analysis of Circular RNAs in Endothelial Cells

Author(s): Lichołai, S.; Studzińska, D.; Plutecka, H.; Gubała, T.; Sanak, M.
Published in: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms241210025

Optimization of escape kinetics by reflecting and resetting

Author(s): Karol Capała, Bartłomiej Dybiec
Published in: Chaos: An Interdisciplinary Journal of Nonlinear Science, Issue 33, 2023, ISSN 1054-1500
Publisher: American Institute of Physics
DOI: 10.1063/5.0159475

Deep learning fetal ultrasound video model match human observers in biometric measurements

Author(s): Szymon Płotka, Adam Klasa, Aneta Lisowska, Joanna Seliga-Siwecka, Michał Lipa, Tomasz Trzciński and Arkadiusz Sitek
Published in: Physics in Medicine & Biology, 2022, ISSN 1361-6560
Publisher: Published on behalf of Institute of Physics and Engineering in Medicine by IOP Publishing Ltd
DOI: 10.1088/1361-6560/ac4d85

Toward Morphologic Atlasing of the Human Whole Brain at the Nanoscale

Author(s): Wieslaw L. Nowinski
Published in: Big Data and Cognitive Computing, Issue 7, 2024, Page(s) 179, ISSN 2504-2289
Publisher: MDPI
DOI: 10.3390/bdcc7040179

Artificial intelligence for dementia—Applied models and digital health

Author(s): Donald M. Lyall, Andrey Kormilitzin, Claire Lancaster, Jose Sousa, Fanny Petermann-Rocha, Christopher Buckley, Eric L. Harshfield, Matthew H. Iveson, Christopher R. Madan, Ríona McArdle, Danielle Newby, Vasiliki Orgeta, Eugene Tang, Stefano Tamburin, Lokendra S. Thakur, Ilianna Lourida, The Deep Dementia Phenotyping (DEMON) Network, David J. Llewellyn, Janice M. Ranson
Published in: Alzheimer's & Dementia: Journal of the Alzheimer's Association, 2023, ISSN 1552-5260
Publisher: Elsevier BV
DOI: 10.1002/alz.13391

Finite element analysis informed variable selection for femoral fracture risk prediction.

Author(s): Mark Taylor; Marco Viceconti; Pinaki Bhattacharya; Xinshan Li
Published in: Journal of the Mechanical Behavior of Biomedical Materials, Issue 3, 2021, ISSN 1751-6161
Publisher: Elsevier BV
DOI: 10.1016/j.jmbbm.2021.104434

COVID-19 Symptoms App Analysis to Foresee Healthcare Impacts: Evidence from Northern Ireland

Author(s): José Sousa, JoãoBarata, Hugo C van Woerdend, Frank Kee
Published in: Applied Soft Computing, 2022, ISSN 1568-4946
Publisher: Elsevier BV
DOI: 10.1016/j.asoc.2021.108324

Multifunctional, Fluorene‐Based Modulator of Cholinergic and GABAergic Neurotransmission as a Novel Drug Candidate for Palliative Treatment of Alzheimer's Disease

Author(s): Dawid Panek, Anna Pasieka, Jakub Jończyk, Milena Gawlińska, Paula Zaręba, Agata Siwek, Małgorzata Wolak, Barbara Mordyl, Monika Głuch‐Lutwin, Gniewomir Latacz, Xavier Brazzolotto, Fabien Chantegreil, Florian Nachon, Jana Zdarova Karasova, Jaroslav Pejchal, Martin Mzik, Vit Sestak, Lukas Prchal, Jitka Odvarkova, Ondrej Soukup, Jan Korabecny, Ales Sorf, Marie Hamsikova, Lucie Zemanova, Lubica
Published in: Angewandte Chemie International Edition, Issue 64, 2025, ISSN 1433-7851
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/anie.202420510

Segmenting the Inferior Alveolar Canal in CBCTs Volumes: the ToothFairy Challenge

Author(s): Federico Bolelli, Luca Lumetti, Shankeeth Vinayahalingam, Mattia Di Bartolomeo, Arrigo Pellacani, Kevin Marchesini, Niels Van Nistelrooij, Pieter Van Lierop, Tong Xi, Yusheng Liu, Rui Xin, Tao Yang, Lisheng Wang, Haoshen Wang, Chenfan Xu, Zhiming Cui, Marek Wodzinski, Henning Müller, Yannick Kirchhoff, Maximilian R. Rokuss, Klaus Maier-Hein, Jaehwan Han, Wan Kim, Hong-Gi Ahn, Tomasz Szczepański,
Published in: IEEE Transactions on Medical Imaging, 2025, Page(s) 1-1, ISSN 0278-0062
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tmi.2024.3523096

Neural networks associated with eye movements in congenital blindness

Author(s): Cemal Koba, Alessandro Crimi, Olivier Collignon, Emiliano Ricciardi, Uri Hasson
Published in: European Journal of Neuroscience, Issue 60, 2024, Page(s) 4624-4638, ISSN 0953-816X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ejn.16459

Stratifying risk of disease in haematuria patients using machine learning techniques to improve diagnostics

Author(s): Anna Drożdż, Brian Duggan, Mark W. Ruddock, Cherith N. Reid, Mary Jo Kurth, Joanne Watt, Allister Irvine, John Lamont, Peter Fitzgerald, Declan O’Rourke, David Curry, Mark Evans, Ruth Boyd, Jose Sousa
Published in: Frontiers in Oncology, Issue 14, 2024, ISSN 2234-943X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fonc.2024.1401071

Transcriptomic profiling of “brain-eating amoeba” Naegleria fowleri infection in mice: the host and the protozoa perspectives

Author(s): Vincent Guerlais, Nina Allouch, E. Ashley Moseman, Alicja W. Wojciechowska, Jakub W. Wojciechowski, Isabel Marcelino
Published in: Frontiers in Cellular and Infection Microbiology, Issue 14, 2024, ISSN 2235-2988
Publisher: Frontiers Media S. A.
DOI: 10.3389/fcimb.2024.1490280

Sensitivity analysis of closed-loop one-chamber and four-chamber models with baroreflex

Author(s): Karolina Tlałka, Harry Saxton, Ian Halliday, Xu Xu, Andrew Narracott, Daniel Taylor, Maciej Malawski
Published in: PLOS Computational Biology, Issue 20, 2025, Page(s) e1012377, ISSN 1553-7358
Publisher: PLOS
DOI: 10.1371/journal.pcbi.1012377

Personalised 3D assessment of trochanteric soft tissues improves HIP fracture classification accuracy

Author(s): Aldieri, Alessandra; Terzini, Mara; Audenino, Alberto; Bignardi, Cristina; Paggiosi, Margaret; Eastell, Richard; Viceconti, Marco; Bhattacharya, Pinaki
Published in: Crossref, Issue 2, 2022, ISSN 0090-6964
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10439-022-02924-1

Community Detection in Brain Connectome using Quantum Annealer Devices

Author(s): M.Wierzbinski, J.Falco-Roget, A.Crimi
Published in: Scientific Reports, 2023, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-023-30579-y

Decentralized approaches for Autonomous Vehicles Coordination

Author(s): L. Gherardini, G. Cabri, M. Montangero
Published in: Internet Technology Letters, 2022, ISSN 2476-1508
Publisher: John Wiley & Sons, Ltd.
DOI: 10.1002/itl2.398

Deep Learning Glioma Grading with the Tumor Microenvironment Analysis Protocol for Comprehensive Learning, Discovering, and Quantifying Microenvironmental Features

Author(s): M. Pytlarz, K. Wojnicki, P. Pilanc, B. Kaminska, A. Crimi
Published in: Journal of Imaging Informatics in Medicine, Issue 37, 2024, Page(s) 1711-1727, ISSN 2948-2933
Publisher: Springer Nature
DOI: 10.1007/s10278-024-01008-x

Refining antimicrobial photodynamic therapy: effect of charge distribution and central metal ion in fluorinated porphyrins on effective control of planktonic and biofilm bacterial forms

Author(s): Barbara Pucelik, Agata Barzowska, Adam Sułek, Mateusz Werłos, Janusz M. Dąbrowski
Published in: Photochemical & Photobiological Sciences, Issue 23, 2024, Page(s) 539-560, ISSN 1474-905X
Publisher: Royal Society of Chemistry
DOI: 10.1007/s43630-024-00538-1

Virtual Screening Approaches to Identify Promising Multitarget-Directed Ligands for the Treatment of Autism Spectrum Disorder

Author(s): Jakub Jończyk, Klaudia Przybylska, Marek Staszewski, Justyna Godyń, Tobias Werner, Monika Stefaniak-Napieralska, Holger Stark, Krzysztof Walczyński, Marek Bajda
Published in: Molecules, Issue 29, 2025, Page(s) 5271, ISSN 1420-3049
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules29225271

Mining Literature-Based Knowledge Graph for Predicting Combination Therapeutics: A COVID-19 Use Case

Author(s): Ahmed Abdeen Hamed; Jakub Jonczyk; Mohammad Zaiyan Alam; Ewa Deelman; Byung Suk Lee
Published in: 2023
Publisher: IEEE Xplore
DOI: 10.1109/ickg55886.2022.00018

Decoding Emotional Valence from Wearables: Can Our Data Reveal Our True Feelings?

Author(s): Michal K. Grzeszczyk, Anna Lisowska, Arkadiusz Sitek, Aneta Lisowska
Published in: Proceedings of the 25th International Conference on Mobile Human-Computer Interaction, 2023, Page(s) 1-6
Publisher: ACM
DOI: 10.1145/3565066.3608698

FetalNet: Multi-Task Deep Learning Framework for Fetal Ultrasound Biometric Measurements

Author(s): Płotka, Szymon & Wlodarczyk, Tomasz & Klasa, Adam & Lipa, Michal & Sitek, Arkadiusz & Trzcinski, Tomasz
Published in: 2021
Publisher: Springer, Cham

Subgrouping and personalized risk evaluation for outcome prediction in ANCA associated vasculitis (AAV)

Author(s): K. Wójcik, A. Ćmiel, T. Satława, S. Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanows
Published in: Proceedings of the 20th International Vasculitis and ANCA workshop 3-6th April 2022, 2022
Publisher: VASCULITIS2022
DOI: 10.5281/zenodo.6381940

Why is the Winner the Best?

Author(s): M. Eisenmann, A. Reinke, V. Weru, M. D. Tizabi, F. Isensee, T. J. Adler, S. Ali, V. Andrearczyk, M. Aubreville, U. Baid, S. Bakas, N. Balu, S. Bano, J. Bernal, S. Bodenstedt, A. Casella, V. Cheplygina, M. Daum, M. De Bruijne, A. Depeursinge, R. Dorent, J. Egger, D. G. Ellis, S. Engelhardt, M. Ganz, N. Ghatwary, G. Girard, P. Godau, A. Gupta, L. Hansen, K. Harada, M. Heinrich, N. Heller, A. Hering,
Published in: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2023, Page(s) 19955-19966
Publisher: IEEE
DOI: 10.1109/cvpr52729.2023.01911

Estimation of the Impact of COVID-19 Pandemic Lockdowns on Breast Cancer Deaths and Costs in Poland using Markovian Monte Carlo Simulation

Author(s): Magdalena Dul, Michal K. Grzeszczyk, Ewelina Nojszewska, Arkadiusz Sitek
Published in: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023, ISBN 978-3-031-36023-7
Publisher: Springer, Cham
DOI: 10.1007/978-3-031-36024-4_10

PERSONALIZED RISK EVALUATION FOR OUTCOME PREDICTION IN ANCA ASSOCIATED VASCULITIS (AAV) USING LATENT CLASS ANALYSIS AND MACHINE LEARNING.

Author(s): K. Wójcik, A. Ćmiel, T. Satława, S. Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanows
Published in: Annals of the Rheumatic Diseases 2022;81:367., 2022
Publisher: BMJ
DOI: 10.1136/annrheumdis-2022-eular.1089

Optimizing Star Aligner for High Throughput Computing in the Cloud

Author(s): Piotr Kica, Sabina Lichołai, Michał Orzechowski, Maciej Malawski
Published in: 2024 IEEE International Conference on Cluster Computing Workshops (CLUSTER Workshops), 2024, Page(s) 162-163
Publisher: IEEE
DOI: 10.1109/clusterworkshops61563.2024.00039

Resting State Brain Connectivity Analysis from EEG and FNIRS Signals

Author(s): R.Blanco, C. Koba, A. Crimi
Published in: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023
Publisher: Springer, Cham
DOI: 10.1007/978-3-031-36021-3_58

Using Unused: Non-Invasive Dynamic FaaS Infrastructure with HPC-Whisk.

Author(s): Bartłomiej Przybylski, Maciej Pawlik, Paweł Żuk, Bartłomiej Łagosz, Maciej Malawski, Krzysztof Rzadca
Published in: SC '22: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis, 2022
Publisher: IEEE Press
DOI: 10.5555/3571885.3571938

Virtual Reality Simulator for Fetoscopic Spina Bifida Repair Surgery

Author(s): Przemysław Korzeniowski; Szymon Płotka; Robert Brawura-Biskupski-Samaha; Arkadiusz Sitek et al.
Published in: 2022 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2022
Publisher: IEEE
DOI: 10.1109/iros47612.2022.9981920

Can gamification reduce the burden of self-reporting in mHealth applications? A feasibility study using machine learning from smartwatch data to estimate cognitive load.

Author(s): Michal K Grzeszczyk, Paulina Adamczyk, Sylwia Marek, Ryszard Pręcikowski, Maciej Kuś, M Patrycja Lelujko, Rosmary Blanco, Tomasz Trzciński, Arkadiusz Sitek, Maciej Malawski, Aneta Lisowska
Published in: AMIA Annu Symp Proc. 2024 Jan 11;2023:., 2023, Page(s) 389–396
Publisher: AMIA
DOI: 10.48550/arxiv.2302.03616

Automated glioma multiclass tumor classification

Author(s): Monika Pytlarz, Kamil Wojnicki, Paulina Pilanc, Bożena Kamińska, Alessandro Crimi
Published in: Medical Imaging 2023: Digital and Computational Pathology, 2023, ISBN 9782151066047
Publisher: SPIE
DOI: 10.1117/12.2654034

Reinforcement Explainability of ChatGPT Prompts by Embedding Breast Cancer Self-Screening Rules into AI Responses

Author(s): Yousef Khan, Ahmed Abdeen Hamed
Published in: 2024 IEEE International Conference on Medical Artificial Intelligence (MedAI), 2024, Page(s) 392-397
Publisher: IEEE
DOI: 10.1109/medai62885.2024.00059

The Graph Database Interface: Scaling Online Transactional and Analytical Graph Workloads to Hundreds of Thousands of Cores

Author(s): Maciej Besta, Robert Gerstenberger, Marc Fischer, Michal Podstawski, Nils Blach, Berke Egeli, Georgy Mitenkov, Wojciech Chlapek, Marek Michalewicz, Hubert Niewiadomski, Juergen Mueller, Torsten Hoefler
Published in: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, 2024, Page(s) 1-18
Publisher: ACM
DOI: 10.1145/3581784.3607068

LumiGauss: Relightable Gaussian Splatting in the Wild

Author(s): Joanna Kaleta, Kacper Kania, Tomasz Trzcinski, Marek Kowalski
Published in: IEEE/CVF Winter Conference on Applications of Computer Vision, 2024
Publisher: IEEE
DOI: 10.48550/arxiv.2408.04474

CXR-FL: Deep Learning-Based Chest X-ray Image Analysis Using Federated Learning

Author(s): Ślazyk F, Jabłecki P, Malawski M, Płotka P., A. Lisowska
Published in: Computational Science – ICCS 2022, Issue 22nd International Conference, London, UK, June 21–23, 2022, Proceedings, Part II, 2022, ISBN 978-3-031-08753-0
Publisher: Springer Cham
DOI: 10.1007/978-3-031-08754-7_50

POTHER: Patch-Voted Deep Learning-based Chest X-ray Bias Analysis for COVID-19 Detection

Author(s): Szczepański T, Sitek A, Trzciński T, Płotka S
Published in: Computational Science – ICCS 2022. ICCS 2022. Lecture Notes in Computer Science, Issue vol 13351, 2022, ISBN 978-3-031-08753-0
Publisher: Springer, Cham
DOI: 10.1007/978-3-031-08754-7_51

BabyNet: Residual Transformer Module for Birth Weight Prediction on Fetal Ultrasound Video

Author(s): Płotka S, Grzeszczyk MK, Lipa M, Trzciński T, and Sitek A.
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2022. MICCAI 2022. Lecture Notes in Computer Science, 2022, ISBN 978-3-031-16439-2
Publisher: Springer, Cham
DOI: 10.1007/978-3-031-16440-8_34

Serverless Approach to Sensitivity Analysis of Computational Models

Author(s): Piotr Kica, Magdalena Otta, Krzysztof Czechowicz, Karol Zając, Piotr Nowakowski, Andrew Narracott, Ian Halliday, Maciej Malawski
Published in: 2023 IEEE/ACM 23rd International Symposium on Cluster, Cloud and Internet Computing (CCGrid), 2023
Publisher: IEEE
DOI: 10.1109/ccgrid57682.2023.00064

SimuScope: Realistic Endoscopic Synthetic Dataset Generation through Surgical Simulation and Diffusion Models

Author(s): Sabina Martyniak, Joanna Kaleta, Diego Dall'Alba, Michał Naskręt, Szymon Płotka, Przemysław Korzeniowski
Published in: IEEE/CVF Winter Conference on Applications of Computer Vision, 2024
Publisher: IEEE
DOI: 10.48550/arxiv.2412.02332

Leveraging ACC Resources for Medical Research

Author(s): Piotr Nowakowski, Marian Bubak, Krzysztof Gądek, Marek Kasztelnik, Maciej Malawski, Jan Meizner, Adam Nowak, Piotr Połeć, Karol Zając, Taras Zhyhulin
Published in: 2023
Publisher: Academic Computer Centre Cyfronet AGH

Multi-task Swin Transformer for Motion Artifacts Classification and Cardiac Magnetic Resonance Image Segmentation

Author(s): Michal K. Grzeszczyk, Szymon Płotka, Arkadiusz Sitek
Published in: Statistical Atlases and Computational Modelling of the Heart Workshop (MICCAI 2022), 2022
Publisher: Springer NAture
DOI: 10.48550/arxiv.2209.02470

Explainable Graph Neural Networks for EEG Classification and Seizure Detection in Epileptic Patients

Author(s): Szymon Mazurek, Rosmary Blanco, Joan Falcó-Roget, Alessandro Crimi
Published in: 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024, Page(s) 1-5
Publisher: IEEE
DOI: 10.1109/isbi56570.2024.10635821

Style Transfer Between Microscopy and Magnetic Resonance Imaging Via Generative Adversarial Network in Small Sample Size Settings

Author(s): Monika Pytlarz, Adrian Onicas, Alessandro Crimi
Published in: 2023 IEEE International Conference on Image Processing (ICIP), 2025, Page(s) 1120-1124
Publisher: IEEE
DOI: 10.1109/icip49359.2023.10222546

Sensitivity analysis of a model of lower limb haemodynamics

Author(s): Otta M., Halliday I., Tsui J., Lim C., Struzik Z., Narracott A.
Published in: Computational Science – ICCS 2022, 2022, ISBN 978-3-031-08756-1
Publisher: Springer Cham
DOI: 10.1007/978-3-031-08757-8_7

D-MiSo: Editing Dynamic 3D Scenes using Multi-Gaussians Soup

Author(s): Joanna Waczyńska, Piotr Borycki, Joanna Kaleta, Sławomir Tadeja, Przemysław Spurek
Published in: Conference on Neural Information Processing Systems 2024, 2024
Publisher: NeurIPS
DOI: 10.48550/arxiv.2405.14276

TabMixer: Noninvasive Estimation of the Mean Pulmonary Artery Pressure via Imaging and Tabular Data Mixing

Author(s): Michal K. Grzeszczyk, Przemysław Korzeniowski, Samer Alabed, Andrew J. Swift, Tomasz Trzciński, Arkadiusz Sitek
Published in: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024, 2024, Page(s) 670-680
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72086-4_63

TabAttention: Learning Attention Conditionally on Tabular Data

Author(s): Michal K. Grzeszczyk, Szymon Płotka, Beata Rebizant, Katarzyna Kosińska-Kaczyńska, Michał Lipa, Robert Brawura-Biskupski-Samaha, Przemysław Korzeniowski, Tomasz Trzciński, Arkadiusz Sitek
Published in: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023, 2024, Page(s) 347-357
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-43990-2_33

3D Reconstructions of Brain from MRI Scans Using Neural Radiance Fields

Author(s): Khadija Iddrisu, Sylwia Malec, Alessandro Crimi
Published in: Lecture Notes in Computer Science, Artificial Intelligence and Soft Computing, 2023, Page(s) 207-218
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-42508-0_19

EsmTemp - Transfer Learning Approach for Predicting Protein Thermostability

Author(s): Adam Sułek, Jakub Jończyk, Patryk Orzechowski, Ahmed Abdeen Hamed, Marek Wodziński
Published in: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Page(s) 187-194
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63759-9_23

Local Sensitivity Analysis of a Closed-Loop in Silico Model of the Human Baroregulation

Author(s): Karolina Tlałka, Harry Saxton, Ian Halliday, Xu Xu, Daniel Taylor, Andrew Narracott, Maciej Malawski
Published in: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Page(s) 173-187
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63772-8_17

Bayesian Filtered Generation of Post-surgical Brain Connectomes on Tumor Patients

Author(s): J. Falco-Roget, A.Crimi
Published in: Imaging Systems for GI Endoscopy, and Graphs in Biomedical Image Analysis. ISGIE GRAIL 2022 2022. Lecture Notes in Computer Science, 2022
Publisher: Springer, Cham
DOI: 10.1007/978-3-031-21083-9_8

Toward the Human Nanoscale Connectome: Neuronal Morphology Format, Modeling, and Storage Requirement Estimation

Author(s): Wieslaw L. Nowinski
Published in: Lecture Notes in Computer Science, Computational Science – ICCS 2023, 2023, Page(s) 691-698
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-36021-3_66

Author(s): Jakub Klimczak, Ahmed Abdeen Hamed
Published in: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Page(s) 257-265
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63775-9_18

Investigation of Energy-Efficient AI Model Architectures and Compression Techniques for “Green” Fetal Brain Segmentation

Author(s): Szymon Mazurek, Monika Pytlarz, Sylwia Malec, Alessandro Crimi
Published in: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Page(s) 61-74
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63772-8_5

Let Me DeCode You: Decoder Conditioning with Tabular Data

Author(s): Tomasz Szczepański, Michal K. Grzeszczyk, Szymon Płotka, Arleta Adamowicz, Piotr Fudalej, Przemysław Korzeniowski, Tomasz Trzciński, Arkadiusz Sitek
Published in: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024, 2024, Page(s) 228-238
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72384-1_22

MISS: Multiclass Interpretable Scoring Systems

Author(s): Michal K. Grzeszczyk, Tomasz Trzciński, Arkadiusz Sitek
Published in: Proceedings of the 2024 SIAM International Conference on Data Mining (SDM), 2024, Page(s) 55-63
Publisher: Society for Industrial and Applied Mathematics
DOI: 10.1137/1.9781611978032.7

Modularity promotes excitation-inhibition balance in synaptically coupled neuronal networks

Author(s): Janaki Raghavan, Zbigniew R. Struzik and Sitabhra Sinha
Published in: ICCS London 2022, 2022
Publisher: ICCS

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