Centre for New Methods in Computational Diagnostics and Personalised Therapy

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Statute of the Centre

The statute will define the legal regulations and organization of the Centre, and will be a notarized document approved by the appropriate authority.

Ecosystem Analysis

Analysis of current framework conditions for the development of in silico medicine in Poland, challenges and opportunities of the system.

Spin-off Culture Principles

A report on the principles of the spinoff and startup culture to be incubated at Sano towards the active selfsustainability model

IP Management Policy

A detailed plan of IP Management with focus on in silico medicine techniques and research data developed by Sano

Human Talent Management Policies

Document describing the best practices on human talent management policies to guarantee the success of Sano.

Research Exchange Programme and Travel Policies

A detailed description of the travel policies with the special focus on research exchange programme.

Research and Development Evaluation Review Report

The final evaluation of R&D activities and results of Sano, with recommendations towards sustainability.

Project Website

A modern and responsive institutional website, providing a single entry point to all information about the Centre.

Pubblicazioni

Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries

Autori: A. Crimi, S. Bakas
Pubblicato in: Lecture Notes in Computer Science (LNCS, volume 12963), BrainLes: International MICCAI Brainlesion Workshop, 2022
Editore: Springer Nature
DOI: 10.1007/978-3-031-08999-2

Artificial intelligence in the diagnosis of necrotising enterocolitis in newborns

Autori: Arkadiusz Sitek, Joanna Seliga-Siwecka, Szymon Płotka, Michal K. Grzeszczyk, Szymon Seliga, Krzysztof Włodarczyk, Renata Bokiniec
Pubblicato in: (Nature) Pediatric Research, 2022, ISSN 0031-3998
Editore: Lippincott Williams & Wilkins Ltd.
DOI: 10.1038/s41390-022-02322-2

Improvements in Quality Control and Library Preparation for Targeted Sequencing Allowed Detection of Potentially Pathogenic Alterations in Circulating Cell-Free DNA Derived from Plasma of Brain Tumor Patients

Autori: Paulina Szadkowska,Adria-Jaume Roura,Bartosz Wojtas,Kamil Wojnicki,Sabina Licholai,Tomasz Waller,Tomasz Gubala,Kacper Zukowski,Michal Karpeta,Kinga Wilkus,Wojciech Kaspera,Sergiusz Nawrocki andBozena Kaminska
Pubblicato in: Cancers, 2022, ISSN 2072-6694
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14163902

The EurValve model execution environment

Autori: M. Bubak, K. Czechowicz, T. Gubała, D. R. Hose, M. Kasztelnik, M. Malawski, J. Meizner, P. Nowakowski, S. Wood
Pubblicato in: Interface Focus, Numero 11, 2021, Pagina/e 20200006, ISSN 2042-8898
Editore: Royal Society Publishing
DOI: 10.1098/rsfs.2020.0006

Preface to the Special Issue on Software Engineering

Autori: Marian Bubak, Maciej Malawski, Renata G. Słota
Pubblicato in: Computing and Informatics, 2021, ISSN 1335-9150
Editore: Slovak Academic Press Ltd.
DOI: 10.31577/cai_2021_4_729

Emergent Computations in Trained Neural Networks and Real Brains

Autori: Néstor Parga, Luis Serrano-Fernández, and Joan Falcó-Roget
Pubblicato in: Journal of Instrumentation, 2023, ISSN 1748-0221
Editore: Institute of Physics
DOI: 10.1088/1748-0221/18/02/c02060

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

Autori: Cameron Martino, Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia, Feryel Soualmia, Alex E. Clark, Aaron F. Garretson, Clarisse A. Marotz, Se Jin Song, Stephen Wandro, Livia S. Zaramela, Rodolfo A. Salido, Qiyun Zhu, Erick Armingol, Yoshiki Vázquez-Baeza, Daniel McDonald, James T. Sorrentino, Bryn Taylor, Pedro Belda-Ferre, Promi Das, Farhana Ali, Che
Pubblicato in: mBio, 2025, ISSN 2150-7511
Editore: ASM
DOI: 10.1128/mbio.04015-24

MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI

Autori: Nancy R. Newlin, Kurt Schilling, Serge Koudoro, Bramsh Qamar Chandio, Praitayini Kanakaraj, Daniel Moyer, Claire E. Kelly, Sila Genc, Jian Chen, Joseph Yuan-Mou Yang, Ye Wu, Yifei He, Jiawei Zhang, Qingrun Zeng, Fan Zhang, Nagesh Adluru, Vishwesh Nath, Sudhir Pathak, Walter Schneider, Anurag Gade, Yogesh Rathi, Tom Hendriks, Anna Vilanova, Maxime Chamberland, Tomasz Pieciak, Dominika Ciupek, Anton
Pubblicato in: Machine Learning for Biomedical Imaging, Numero 2, 2025, Pagina/e 1083-1105, ISSN 2766-905X
Editore: MELBA
DOI: 10.59275/j.melba.2024-9c68

Quaternion double random phase encoding for privacy-preserving cancelable biometrics

Autori: Mahmoud Nasr, Adam Piórkowski, Fathi E. Abd El-Samie
Pubblicato in: Multimedia Tools and Applications, Numero 83, 2024, Pagina/e 85065-85078, ISSN 1573-7721
Editore: Springer
DOI: 10.1007/s11042-024-18621-1

Functional and structural reorganization in brain tumors: a machine learning approach using desynchronized functional oscillations

Autori: Joan Falcó-Roget, Alberto Cacciola, Fabio Sambataro, Alessandro Crimi
Pubblicato in: Communications Biology, Numero 7, 2024, ISSN 2399-3642
Editore: Springer Nature
DOI: 10.1038/s42003-024-06119-3

End-to-End Stroke Imaging Analysis Using Effective Connectivity and Interpretable Artificial Intelligence

Autori: Wojciech Ciezobka, Joan Falcó-Roget, Cemal Koba, Alessandro Crimi
Pubblicato in: IEEE Access, Numero 13, 2025, Pagina/e 10227-10239, ISSN 2169-3536
Editore: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2025.3529179

Minimal data requirement for realistic endoscopic image generation with Stable Diffusion

Autori: Joanna Kaleta, Diego Dall’Alba, Szymon Płotka, Przemysław Korzeniowski
Pubblicato in: International Journal of Computer Assisted Radiology and Surgery, Numero 19, 2024, Pagina/e 531-539, ISSN 1861-6429
Editore: Springer Nature
DOI: 10.1007/s11548-023-03030-w

BabyNet＋＋: Fetal birth weight prediction using biometry multimodal data acquired less than 24 hours before delivery

Autori: Szymon Płotka, Michal K. Grzeszczyk, Robert Brawura-Biskupski-Samaha, Paweł Gutaj, Michał Lipa, Tomasz Trzciński, Ivana Išgum, Clara I. Sánchez, Arkadiusz Sitek
Pubblicato in: Computers in Biology and Medicine, Numero 167, 2024, Pagina/e 107602, ISSN 0010-4825
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.compbiomed.2023.107602

A note on “Individual differences, missing sulci, and nomenclature: A comment on ‘On presentation of the human cerebral sulci from inside the cerebrum’”

Autori: Wieslaw L. Nowinski
Pubblicato in: Journal of Anatomy, 2023, ISSN 1469-7580
Editore: Wiley
DOI: 10.1111/joa.13930

Altered longitudinal structural connectome in pediatric mild traumatic brain injury: an A-CAP study

Autori: Ashley Ware, Adrian Onicas et al
Pubblicato in: Brain Communications, 2023, ISSN 2632-1297
Editore: Oxford University Press
DOI: 10.1093/braincomms/fcad173

Computing performance requirements for web service compositions

Autori: Antonio García-Domínguez , Francisco Palomo-Lozano , Inmaculada Medina-Bulo, Alfredo Ibias , Manuel Núñez
Pubblicato in: Computer Standards & Interfaces, 2023, ISSN 0920-5489
Editore: Elsevier BV
DOI: 10.1016/j.csi.2022.103664

Femoral neck strain prediction during level walking using a combined musculoskeletal and finite element model approach

Autori: Zainab Altai; Erica Montefiori; Bart van Veen; Margaret Paggiosi; Eugene V. McCloskey; Marco Viceconti; Claudia Mazzà; Xinshan Li
Pubblicato in: PLoS ONE, Numero 2, 2021, ISSN 1549-1277
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0245121

Reshaped functional connectivity gradients in acute ischemic stroke

Autori: Cemal Koba, Joan Falcó-Roget, Alessandro Crimi
Pubblicato in: NeuroImage: Clinical, Numero 45, 2025, Pagina/e 103755, ISSN 2213-1582
Editore: Elsevier BV
DOI: 10.1016/j.nicl.2025.103755

Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results

Autori: Kelly Payette, Céline Steger, Roxane Licandro, Priscille De Dumast, Hongwei Bran Li, Matthew Barkovich, Liu Li, Maik Dannecker, Chen Chen, Cheng Ouyang, Niccolò McConnell, Alina Miron, Yongmin Li, Alena Uus, Irina Grigorescu, Paula Ramirez Gilliland, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Haoyu Wang, Ziyan Huang, Jin Ye, Mireia Alenyà, Valentin Comte, Oscar Camara, Jean-Bap
Pubblicato in: IEEE Transactions on Medical Imaging, 2024, Pagina/e 1-1, ISSN 0278-0062
Editore: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tmi.2024.3485554

Serverless Computing for Scientific Applications

Autori: M. Malawski, B. Balis
Pubblicato in: IEEE Internet Computing, Numero ( Volume: 26, Numero: 4, 01 July-Aug. 2022), 2022, ISSN 1089-7801
Editore: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mic.2022.3168810

COVID-19 Drug Repurposing: a Network-based Framework for Exploring BioMedical Literature and Clinical Trials for Possible Treatments

Autori: Ahmed Abdeen Hamed *, Tamer E. Fandy, Karolina L. Tkaczuk, Byung Suk Lee
Pubblicato in: Pharmaceutics, 2022, ISSN 1999-4923
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14030567

Relating Global and Local Connectome Changes to Dementia and Targeted Gene Expression in Alzheimer's Disease

Autori: Samar S. M. Elsheikh, Emile R. Chimusa, Alzheimer's Disease Neuroimaging Initiative, Nicola J. Mulder and Alessandro Crimi
Pubblicato in: Frontiers in Human Neuroscience, 2021, ISSN 1662-5161
Editore: Frontiers Research Foundation
DOI: 10.3389/fnhum.2021.761424

CACTUS: A Comprehensive Abstraction and Classification Tool for Uncovering Structures

Autori: Luca Gherardini, Varun Ravi Varma, Karol Capała, Roger Woods, Jose Sousa
Pubblicato in: ACM Transactions on Intelligent Systems and Technology, Numero 15, 2024, Pagina/e 1-23, ISSN 2157-6904
Editore: Association for Computing Machinery (ACM)
DOI: 10.1145/3649459

Squeeziness for Non-Deterministic Systems

Autori: Alfredo Ibias, Manuel Núñez
Pubblicato in: Information and Software Technology, 2023, ISSN 0950-5849
Editore: Elsevier BV
DOI: 10.1016/j.infsof.2023.107173

Vascular phenotypes in early hypertension

Autori: Eleanor Murray, Christian Delles, Patryk Orzechowski, Pawel RENC, Arkadiusz SITEK, Joost Wagenaar, and Tomasz Guzik
Pubblicato in: Journal of Human Hypertension, 2022, ISSN 0950-9240
Editore: Nature Publishing Group
DOI: 10.1038/s41371-022-00794-7

Prediction of misfolded proteins spreading in Alzheimer’s disease using machine learning and spreading models

Autori: Luca Gherardini, Aleksandra Zajdel, Lorenzo Pini, Alessandro Crimi
Pubblicato in: Cerebral Cortex, Numero 33, 2023, Pagina/e 11471-11485, ISSN 1047-3211
Editore: Oxford University Press
DOI: 10.1093/cercor/bhad380

"""SATO (IDEAS expAnded wiTh BCIO): workflow for designers of patient-centered mobile health behaviourchange intervention applications"""

Autori: Aneta Lisowska, Szymon Wilk, Mor Peleg
Pubblicato in: Journal of Biomedical Informatics, 2023, ISSN 1532-0464
Editore: Academic Press
DOI: 10.1016/j.jbi.2022.104276

Current Trends in Software Engineering Bachelor Theses

Autori: Jacek Dajda, Michał Idzik, Jakub Sroka, Mikołaj Sikora Wiktor Pawłowski, Maciej Smo lka, Przemysław Jabłecki Filip Ślazyk, Maciej Malawski, Emilia Majerz Aleksandra Pasternak, Witold Dzwinel
Pubblicato in: Computing and Informatics, 2021, ISSN 1335-9150
Editore: Slovak Academic Press Ltd.
DOI: 10.31577/cai_2021_4_930

Ab initio protein structure prediction – the necessary presence of external force field as it is delivered by Hsp40 chaperone

Autori: Irena Roterman, K Stapor, L Konieczny
Pubblicato in: BMC Bioinformatics, Numero 24, 418, 2023, ISSN 1471-2105
Editore: BioMed Central
DOI: 10.21203/rs.3.rs-3212848/v1

Connexins and Pannexins—Similarities and Differences According to the FOD-M Model

Autori: Irena Roterman, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny
Pubblicato in: Biomedicines, Numero 10, 2024, Pagina/e 1504, ISSN 2227-9059
Editore: MDPI
DOI: 10.3390/biomedicines10071504

Safeguarding authenticity for mitigating the harms of generative AI: Issues, research agenda, and policies for detection, fact-checking, and ethical AI

Autori: Ahmed Abdeen Hamed, Malgorzata Zachara-Szymanska, Xindong Wu
Pubblicato in: iScience, Numero 27, 2025, Pagina/e 108782, ISSN 2589-0042
Editore: Cell Press
DOI: 10.1016/j.isci.2024.108782

Real-time placental vessel segmentation in fetoscopic laser surgery for Twin-to-Twin Transfusion Syndrome

Autori: Szymon Płotka, Tomasz Szczepański, Paula Szenejko, Przemysław Korzeniowski, Jesús Rodriguez Calvo, Asma Khalil, Alireza Shamshirsaz, Robert Brawura-Biskupski-Samaha, Ivana Išgum, Clara I. Sánchez, Arkadiusz Sitek
Pubblicato in: Medical Image Analysis, Numero 99, 2025, Pagina/e 103330, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/j.media.2024.103330

Artificial Intelligence in PET: an Industry Perspective

Autori: Sitek, Arkadiusz; Ahn, Sangtae; Asma, Evren; Chandler, Adam; Ihsani, Alvin; Prevrhal, Sven; Rahmim, Arman; Saboury, Babak; Thielemans, Kris
Pubblicato in: PET Clinics, Numero August 03, 2021, 2021, ISSN 1556-8598
Editore: Elsevier Saunders
DOI: 10.1016/j.cpet.2021.06.006

Dependence of Protein Structure on Environment: FOD Model Applied to Membrane Proteins

Autori: Irena Roterman, Katarzyna Stapor, Krzysztof Gądek, Tomasz Gubała , Piotr Nowakowski, Piotr Fabian and Leszek Konieczny
Pubblicato in: Membrane Biological Function in Health and Disease, Numero Membranes 2022, 12(1), 50, 2021, ISSN 2077-0375
Editore: Molecular Diversity Preservation International
DOI: 10.3390/membranes12010050

Modelling The Hemodynamics of Coronary Ischemia

Autori: Baraikan, Abdulaziz Al, Krzysztof Czechowicz, Paul D. Morris, Ian Halliday, Rebecca C. Gosling, Julian P. Gunn, Andrew J. Narracott, Gareth Williams, Pankaj Garg, Maciej Malawski, and et al.
Pubblicato in: Fluids, 2023, ISSN 2311-5521
Editore: MDPI
DOI: 10.3390/fluids8050159

Storage estimation in morphology modeling of the human whole brain at the nanoscale

Autori: Wieslaw L. Nowinski
Pubblicato in: Journal of Computational Science, Numero 81, 2024, Pagina/e 102346, ISSN 1877-7503
Editore: Elsevier BV
DOI: 10.1016/j.jocs.2024.102346

GraphTar: applying word2vec and graph neural networks to miRNA target prediction

Autori: Jan Przybyszewski, Maciej Malawski, Sabina Lichołai
Pubblicato in: BMC Bioinformatics, Numero 24, 2023, ISSN 1471-2105
Editore: BioMed Central
DOI: 10.1186/s12859-023-05564-x

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge

Autori: Gabriel Girard, Jonathan Rafael-Patiño, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak et al.
Pubblicato in: NeuroImage, 2023, ISSN 1053-8119
Editore: Academic Press
DOI: 10.1016/j.neuroimage.2023.120231

MiR-191 as a Key Molecule in Aneurysmal Aortic Remodeling

Autori: Sabina Lichołai, Dorota Studzińska, Hanna Plutecka, Tomasz Gubała, Wojciech Szczeklik and Marek Sanak
Pubblicato in: Biomolecules, 2021, ISSN 2218-273X
Editore: MDPI
DOI: 10.3390/biom11111611

Toward the Observability of Cloud-Native Applications: The Overview of the State-of-the-Art

Autori: Joanna Kosinska, Bartosz Balis, Marek Konieczny, Maciej Malawski, Slawomir Zielinski
Pubblicato in: IEEE Access, 2023, ISSN 2169-3536
Editore: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2023.3281860

Improved myocardial blood flow estimation with residual activity correction and motion correction in 18F-flurpiridaz PET myocardial perfusion imaging

Autori: Yuka Otaki, Serge D. Van Kriekinge, Chih-Chun Wei, Paul Kavanagh, Ananya Singh, Tejas Parekh, Marcelo Di Carli, Jamshid Maddahi, Arkadiusz Sitek, Christopher Buckley, Daniel S. Berman & Piotr J. Slomka
Pubblicato in: European Journal of Nuclear Medicine and Molecular Imaging, 2021, ISSN 1619-7070
Editore: Springer Verlag
DOI: 10.1007/s00259-021-05643-2

Adaptation to space conditions of novel bacterial species isolated from the International Space Station revealed by functional gene annotations and comparative genome analysis

Autori: Lukasz M. Szydlowski, Alper A. Bulbul, Anna C. Simpson, Deniz E. Kaya, Nitin K. Singh, Ugur O. Sezerman, Paweł P. Łabaj, Tomasz Kosciolek, Kasthuri Venkateswaran
Pubblicato in: Microbiome, Numero 12, 2025, Pagina/e 190, ISSN 2049-2618
Editore: Springer Nature
DOI: 10.1186/s40168-024-01916-8

The Use of Digital Coronary Phantoms for the Validation of Arterial Geometry Reconstruction and Computation of Virtual FFR

Autori: Pederzani, Giulia, Krzysztof Czechowicz, Nada Ghorab, Paul D. Morris, Julian P. Gunn, Andrew J. Narracott, David Rodney Hose, and Ian Halliday
Pubblicato in: Fluids, 2023, ISSN 2311-5521
Editore: MDPI
DOI: 10.3390/fluids7060201

A Stochastic Model of Translocation of Knotted Proteins

Autori: Karol Capała, Piotr Szymczak
Pubblicato in: Physical Review E, 2022, ISSN 2470-0045
Editore: American Physical Society
DOI: 10.1103/physreve.106.054406

SaNDA: a Small and iNcomplete Dataset Analyser

Autori: Alfredo Ibias, Varun Ravi Varma, Karol Capała, Luca Gherardini, Jose Sousa
Pubblicato in: Information Sciences, 2023, ISSN 0020-0255
Editore: Elsevier BV
DOI: 10.1016/j.ins.2023.119078

O pewnym modelu zawijania białek

Autori: Marcin WIERZBIŃSKI, Karolina L. TKACZUK, Alessandro CRIMI
Pubblicato in: DeltAmi, 2023, ISSN 0137-3005
Editore: DeltAmi

Nuclear Medicine and Artificial Intelligence: Best Practices for Algorithm Development

Autori: Tyler J. Bradshaw, Ronald Boellaard, Joyita Dutta, Abhinav K. Jha, Paul Jacobs, Quanzheng Li, Chi Liu, Arkadiusz Sitek, Babak Saboury, Peter J.H. Scott, Piotr J. Slomka, John J. Sunderland, Richard L. Wahl, Fereshteh Yousefirizi, Sven Zuehlsdorff, Arman Rahmim and Irène Buvat
Pubblicato in: Journal of Nuclear Medicine, 2021, ISSN 0161-5505
Editore: Kexue Chubaneshe/Science Press
DOI: 10.2967/jnumed.121.262567

Macrophage Resistance to Ionizing Radiation Exposure Is Accompanied by Decreased Cathepsin D and Increased Transferrin Receptor 1 Expression

Autori: Ana Teresa Pinto, Ana Beatriz Machado, Hugo Osório, Marta Laranjeiro Pinto, Rui Vitorino, Gonçalo Justino, Cátia Santa, Flávia Castro, Tânia Cruz, Carla Rodrigues, Jorge Lima, José Luís R Sousa, Ana Patrícia Cardoso, Rita Figueira, Armanda Monteiro, Margarida Marques, Bruno Manadas, Jarne Pauwels, Kris Gevaert, Marc Mareel, Sónia Rocha, Tiago Duarte, Maria José Oliveira
Pubblicato in: Cancers, 2022, ISSN 2072-6694
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers15010270

Placental vessel segmentation and registration in fetoscopy: Literature review and MICCAI FetReg2021 challenge findings

Autori: Sophia Bano, Alessandro Casella, Francisco Vasconcelos, Abdul Qayyum, Abdesslam Benzinou, Moona Mazher, Fabrice Meriaudeau, Chiara Lena, Ilaria Anita Cintorrino, Gaia Romana De Paolis, Jessica Biagioli, Daria Grechishnikova, Jing Jiao, Bizhe Bai, Yanyan Qiao, Binod Bhattarai, Rebati Raman Gaire, Ronast Subedi, Eduard Vazquez, Szymon Płotka, Aneta Lisowska, Arkadiusz Sitek, George Attilakos, Ruwan
Pubblicato in: Medical Image Analysis, Numero 92, 2024, Pagina/e 103066, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/j.media.2023.103066

Taxonomy of Acute Stroke: Imaging, Processing, and Treatment

Autori: Wieslaw L. Nowinski
Pubblicato in: Diagnostics, Numero 14, 2024, Pagina/e 1057, ISSN 2075-4418
Editore: MDPI
DOI: 10.3390/diagnostics14101057

Comparing structure–function relationships in brain networks using EEG and fNIRS

Autori: Rosmary Blanco, Maria Giulia Preti, Cemal Koba, Dimitri Van De Ville, Alessandro Crimi
Pubblicato in: Scientific Reports, Numero 14, 2024, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-024-79817-x

Signature Genes Selection and Functional Analysis of Astrocytoma Phenotypes: A Comparative Study

Autori: Anna Drozdz, Caitriona E. McInerney, Kevin M. Prise, Veronica J. Spence, Jose Sousa
Pubblicato in: Cancers, Numero 16, 2025, Pagina/e 3263, ISSN 2072-6694
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers16193263

Justifying Short-Term Load Forecasts Obtained with the Use of Neural Models

Autori: Tadeusz A. Grzeszczyk 1,Michal K. Grzeszczyk
Pubblicato in: Energies, Numero 2022, 15(5), 2022, ISSN 1996-1073
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/en15051852

Synergistic eigenanalysis of covariance and Hessian matrices for enhanced binary classification

Autori: Agus Hartoyo, Jan Argasiński, Aleksandra Trenk, Kinga Przybylska, Anna Błasiak, Alessandro Crimi
Pubblicato in: Computers in Biology and Medicine, 2025, ISSN 1879-0534
Editore: Elsevier
DOI: 10.48550/arxiv.2402.09281

Investigating the interaction between EEG and fNIRS: A multimodal network analysis of brain connectivity

Autori: Rosmary Blanco, Cemal Koba, Alessandro Crimi
Pubblicato in: Journal of Computational Science, Numero 82, 2024, Pagina/e 102416, ISSN 1877-7503
Editore: Elsevier BV
DOI: 10.1016/j.jocs.2024.102416

On the Dependence of Prion and Amyloid Structure on the Folding Environment

Autori: Irena Roterman, Katarzyna Stapor, Krzysztof Gądek, Tomasz Gubała , Piotr Nowakowski, Piotr Fabian and Leszek Konieczny
Pubblicato in: International Journal of Molecule Sciences, Numero Int. J. Mol. Sci. 2021, 22(24), 13494;, 2021, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms222413494

Effects of data transformation and model selection on feature importance in microbiome classification data

Autori: Zuzanna Karwowska, Oliver Aasmets, null null, Mait Metspalu, Andres Metspalu, Lili Milani, Tõnu Esko, Tomasz Kosciolek, Elin Org
Pubblicato in: Microbiome, Numero 13, 2025, ISSN 2049-2618
Editore: Springer Nature
DOI: 10.1186/s40168-024-01996-6

AI & COVID-19

Autori: Davide Bacciu, Emanuela Girardi, Marco Maratea and Jose Sousa
Pubblicato in: Intelligenza Artificiale, 2022, ISSN 1724-8035
Editore: IOS Press BV
DOI: 10.3233/ia-210121

On human nanoscale synaptome: Morphology modeling and storage estimation

Autori: Wieslaw L. Nowinski
Pubblicato in: PLOS ONE, Numero 19, 2024, Pagina/e e0310156, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0310156

Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome

Autori: Stefanie Duller, Simone Vrbancic, Łukasz Szydłowski, Alexander Mahnert, Marcus Blohs, Michael Predl, Christina Kumpitsch, Verena Zrim, Christoph Högenauer, Tomasz Kosciolek, Ruth A. Schmitz, Anna Eberhard, Melanie Dragovan, Laura Schmidberger, Tamara Zurabischvili, Viktoria Weinberger, Adrian Mathias Moser, Dagmar Kolb, Dominique Pernitsch, Rokhsareh Mohammadzadeh, Torben Kühnast, Thomas Ratte
Pubblicato in: Nature Communications, Numero 15, 2024, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-024-52037-7

Comprehensive Analysis of Circular RNAs in Endothelial Cells

Autori: Lichołai, S.; Studzińska, D.; Plutecka, H.; Gubała, T.; Sanak, M.
Pubblicato in: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms241210025

Optimization of escape kinetics by reflecting and resetting

Autori: Karol Capała, Bartłomiej Dybiec
Pubblicato in: Chaos: An Interdisciplinary Journal of Nonlinear Science, Numero 33, 2023, ISSN 1054-1500
Editore: American Institute of Physics
DOI: 10.1063/5.0159475

Deep learning fetal ultrasound video model match human observers in biometric measurements

Autori: Szymon Płotka, Adam Klasa, Aneta Lisowska, Joanna Seliga-Siwecka, Michał Lipa, Tomasz Trzciński and Arkadiusz Sitek
Pubblicato in: Physics in Medicine & Biology, 2022, ISSN 1361-6560
Editore: Published on behalf of Institute of Physics and Engineering in Medicine by IOP Publishing Ltd
DOI: 10.1088/1361-6560/ac4d85

Toward Morphologic Atlasing of the Human Whole Brain at the Nanoscale

Autori: Wieslaw L. Nowinski
Pubblicato in: Big Data and Cognitive Computing, Numero 7, 2024, Pagina/e 179, ISSN 2504-2289
Editore: MDPI
DOI: 10.3390/bdcc7040179

Artificial intelligence for dementia—Applied models and digital health

Autori: Donald M. Lyall, Andrey Kormilitzin, Claire Lancaster, Jose Sousa, Fanny Petermann-Rocha, Christopher Buckley, Eric L. Harshfield, Matthew H. Iveson, Christopher R. Madan, Ríona McArdle, Danielle Newby, Vasiliki Orgeta, Eugene Tang, Stefano Tamburin, Lokendra S. Thakur, Ilianna Lourida, The Deep Dementia Phenotyping (DEMON) Network, David J. Llewellyn, Janice M. Ranson
Pubblicato in: Alzheimer's & Dementia: Journal of the Alzheimer's Association, 2023, ISSN 1552-5260
Editore: Elsevier BV
DOI: 10.1002/alz.13391

Finite element analysis informed variable selection for femoral fracture risk prediction.

Autori: Mark Taylor; Marco Viceconti; Pinaki Bhattacharya; Xinshan Li
Pubblicato in: Journal of the Mechanical Behavior of Biomedical Materials, Numero 3, 2021, ISSN 1751-6161
Editore: Elsevier BV
DOI: 10.1016/j.jmbbm.2021.104434

COVID-19 Symptoms App Analysis to Foresee Healthcare Impacts: Evidence from Northern Ireland

Autori: José Sousa, JoãoBarata, Hugo C van Woerdend, Frank Kee
Pubblicato in: Applied Soft Computing, 2022, ISSN 1568-4946
Editore: Elsevier BV
DOI: 10.1016/j.asoc.2021.108324

Multifunctional, Fluorene‐Based Modulator of Cholinergic and GABAergic Neurotransmission as a Novel Drug Candidate for Palliative Treatment of Alzheimer's Disease

Autori: Dawid Panek, Anna Pasieka, Jakub Jończyk, Milena Gawlińska, Paula Zaręba, Agata Siwek, Małgorzata Wolak, Barbara Mordyl, Monika Głuch‐Lutwin, Gniewomir Latacz, Xavier Brazzolotto, Fabien Chantegreil, Florian Nachon, Jana Zdarova Karasova, Jaroslav Pejchal, Martin Mzik, Vit Sestak, Lukas Prchal, Jitka Odvarkova, Ondrej Soukup, Jan Korabecny, Ales Sorf, Marie Hamsikova, Lucie Zemanova, Lubica
Pubblicato in: Angewandte Chemie International Edition, Numero 64, 2025, ISSN 1433-7851
Editore: John Wiley & Sons Ltd.
DOI: 10.1002/anie.202420510

Segmenting the Inferior Alveolar Canal in CBCTs Volumes: the ToothFairy Challenge

Autori: Federico Bolelli, Luca Lumetti, Shankeeth Vinayahalingam, Mattia Di Bartolomeo, Arrigo Pellacani, Kevin Marchesini, Niels Van Nistelrooij, Pieter Van Lierop, Tong Xi, Yusheng Liu, Rui Xin, Tao Yang, Lisheng Wang, Haoshen Wang, Chenfan Xu, Zhiming Cui, Marek Wodzinski, Henning Müller, Yannick Kirchhoff, Maximilian R. Rokuss, Klaus Maier-Hein, Jaehwan Han, Wan Kim, Hong-Gi Ahn, Tomasz Szczepański,
Pubblicato in: IEEE Transactions on Medical Imaging, 2025, Pagina/e 1-1, ISSN 0278-0062
Editore: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tmi.2024.3523096

Neural networks associated with eye movements in congenital blindness

Autori: Cemal Koba, Alessandro Crimi, Olivier Collignon, Emiliano Ricciardi, Uri Hasson
Pubblicato in: European Journal of Neuroscience, Numero 60, 2024, Pagina/e 4624-4638, ISSN 0953-816X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/ejn.16459

Stratifying risk of disease in haematuria patients using machine learning techniques to improve diagnostics

Autori: Anna Drożdż, Brian Duggan, Mark W. Ruddock, Cherith N. Reid, Mary Jo Kurth, Joanne Watt, Allister Irvine, John Lamont, Peter Fitzgerald, Declan O’Rourke, David Curry, Mark Evans, Ruth Boyd, Jose Sousa
Pubblicato in: Frontiers in Oncology, Numero 14, 2024, ISSN 2234-943X
Editore: Frontiers Media S. A.
DOI: 10.3389/fonc.2024.1401071

Transcriptomic profiling of “brain-eating amoeba” Naegleria fowleri infection in mice: the host and the protozoa perspectives

Autori: Vincent Guerlais, Nina Allouch, E. Ashley Moseman, Alicja W. Wojciechowska, Jakub W. Wojciechowski, Isabel Marcelino
Pubblicato in: Frontiers in Cellular and Infection Microbiology, Numero 14, 2024, ISSN 2235-2988
Editore: Frontiers Media S. A.
DOI: 10.3389/fcimb.2024.1490280

Sensitivity analysis of closed-loop one-chamber and four-chamber models with baroreflex

Autori: Karolina Tlałka, Harry Saxton, Ian Halliday, Xu Xu, Andrew Narracott, Daniel Taylor, Maciej Malawski
Pubblicato in: PLOS Computational Biology, Numero 20, 2025, Pagina/e e1012377, ISSN 1553-7358
Editore: PLOS
DOI: 10.1371/journal.pcbi.1012377

Personalised 3D assessment of trochanteric soft tissues improves HIP fracture classification accuracy

Autori: Aldieri, Alessandra; Terzini, Mara; Audenino, Alberto; Bignardi, Cristina; Paggiosi, Margaret; Eastell, Richard; Viceconti, Marco; Bhattacharya, Pinaki
Pubblicato in: Crossref, Numero 2, 2022, ISSN 0090-6964
Editore: Kluwer Academic Publishers
DOI: 10.1007/s10439-022-02924-1

Community Detection in Brain Connectome using Quantum Annealer Devices

Autori: M.Wierzbinski, J.Falco-Roget, A.Crimi
Pubblicato in: Scientific Reports, 2023, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-023-30579-y

Decentralized approaches for Autonomous Vehicles Coordination

Autori: L. Gherardini, G. Cabri, M. Montangero
Pubblicato in: Internet Technology Letters, 2022, ISSN 2476-1508
Editore: John Wiley & Sons, Ltd.
DOI: 10.1002/itl2.398

Deep Learning Glioma Grading with the Tumor Microenvironment Analysis Protocol for Comprehensive Learning, Discovering, and Quantifying Microenvironmental Features

Autori: M. Pytlarz, K. Wojnicki, P. Pilanc, B. Kaminska, A. Crimi
Pubblicato in: Journal of Imaging Informatics in Medicine, Numero 37, 2024, Pagina/e 1711-1727, ISSN 2948-2933
Editore: Springer Nature
DOI: 10.1007/s10278-024-01008-x

Refining antimicrobial photodynamic therapy: effect of charge distribution and central metal ion in fluorinated porphyrins on effective control of planktonic and biofilm bacterial forms

Autori: Barbara Pucelik, Agata Barzowska, Adam Sułek, Mateusz Werłos, Janusz M. Dąbrowski
Pubblicato in: Photochemical & Photobiological Sciences, Numero 23, 2024, Pagina/e 539-560, ISSN 1474-905X
Editore: Royal Society of Chemistry
DOI: 10.1007/s43630-024-00538-1

Virtual Screening Approaches to Identify Promising Multitarget-Directed Ligands for the Treatment of Autism Spectrum Disorder

Autori: Jakub Jończyk, Klaudia Przybylska, Marek Staszewski, Justyna Godyń, Tobias Werner, Monika Stefaniak-Napieralska, Holger Stark, Krzysztof Walczyński, Marek Bajda
Pubblicato in: Molecules, Numero 29, 2025, Pagina/e 5271, ISSN 1420-3049
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules29225271

Mining Literature-Based Knowledge Graph for Predicting Combination Therapeutics: A COVID-19 Use Case

Autori: Ahmed Abdeen Hamed; Jakub Jonczyk; Mohammad Zaiyan Alam; Ewa Deelman; Byung Suk Lee
Pubblicato in: 2023
Editore: IEEE Xplore
DOI: 10.1109/ickg55886.2022.00018

Decoding Emotional Valence from Wearables: Can Our Data Reveal Our True Feelings?

Autori: Michal K. Grzeszczyk, Anna Lisowska, Arkadiusz Sitek, Aneta Lisowska
Pubblicato in: Proceedings of the 25th International Conference on Mobile Human-Computer Interaction, 2023, Pagina/e 1-6
Editore: ACM
DOI: 10.1145/3565066.3608698

FetalNet: Multi-Task Deep Learning Framework for Fetal Ultrasound Biometric Measurements

Autori: Płotka, Szymon & Wlodarczyk, Tomasz & Klasa, Adam & Lipa, Michal & Sitek, Arkadiusz & Trzcinski, Tomasz
Pubblicato in: 2021
Editore: Springer, Cham

Subgrouping and personalized risk evaluation for outcome prediction in ANCA associated vasculitis (AAV)

Autori: K. Wójcik, A. Ćmiel, T. Satława, S. Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanows
Pubblicato in: Proceedings of the 20th International Vasculitis and ANCA workshop 3-6th April 2022, 2022
Editore: VASCULITIS2022
DOI: 10.5281/zenodo.6381940

Why is the Winner the Best?

Autori: M. Eisenmann, A. Reinke, V. Weru, M. D. Tizabi, F. Isensee, T. J. Adler, S. Ali, V. Andrearczyk, M. Aubreville, U. Baid, S. Bakas, N. Balu, S. Bano, J. Bernal, S. Bodenstedt, A. Casella, V. Cheplygina, M. Daum, M. De Bruijne, A. Depeursinge, R. Dorent, J. Egger, D. G. Ellis, S. Engelhardt, M. Ganz, N. Ghatwary, G. Girard, P. Godau, A. Gupta, L. Hansen, K. Harada, M. Heinrich, N. Heller, A. Hering,
Pubblicato in: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2023, Pagina/e 19955-19966
Editore: IEEE
DOI: 10.1109/cvpr52729.2023.01911

Estimation of the Impact of COVID-19 Pandemic Lockdowns on Breast Cancer Deaths and Costs in Poland using Markovian Monte Carlo Simulation

Autori: Magdalena Dul, Michal K. Grzeszczyk, Ewelina Nojszewska, Arkadiusz Sitek
Pubblicato in: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023, ISBN 978-3-031-36023-7
Editore: Springer, Cham
DOI: 10.1007/978-3-031-36024-4_10

PERSONALIZED RISK EVALUATION FOR OUTCOME PREDICTION IN ANCA ASSOCIATED VASCULITIS (AAV) USING LATENT CLASS ANALYSIS AND MACHINE LEARNING.

Autori: K. Wójcik, A. Ćmiel, T. Satława, S. Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanows
Pubblicato in: Annals of the Rheumatic Diseases 2022;81:367., 2022
Editore: BMJ
DOI: 10.1136/annrheumdis-2022-eular.1089

Optimizing Star Aligner for High Throughput Computing in the Cloud

Autori: Piotr Kica, Sabina Lichołai, Michał Orzechowski, Maciej Malawski
Pubblicato in: 2024 IEEE International Conference on Cluster Computing Workshops (CLUSTER Workshops), 2024, Pagina/e 162-163
Editore: IEEE
DOI: 10.1109/clusterworkshops61563.2024.00039

Resting State Brain Connectivity Analysis from EEG and FNIRS Signals

Autori: R.Blanco, C. Koba, A. Crimi
Pubblicato in: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023
Editore: Springer, Cham
DOI: 10.1007/978-3-031-36021-3_58

Using Unused: Non-Invasive Dynamic FaaS Infrastructure with HPC-Whisk.

Autori: Bartłomiej Przybylski, Maciej Pawlik, Paweł Żuk, Bartłomiej Łagosz, Maciej Malawski, Krzysztof Rzadca
Pubblicato in: SC '22: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis, 2022
Editore: IEEE Press
DOI: 10.5555/3571885.3571938

Virtual Reality Simulator for Fetoscopic Spina Bifida Repair Surgery

Autori: Przemysław Korzeniowski; Szymon Płotka; Robert Brawura-Biskupski-Samaha; Arkadiusz Sitek et al.
Pubblicato in: 2022 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2022
Editore: IEEE
DOI: 10.1109/iros47612.2022.9981920

Can gamification reduce the burden of self-reporting in mHealth applications? A feasibility study using machine learning from smartwatch data to estimate cognitive load.

Autori: Michal K Grzeszczyk, Paulina Adamczyk, Sylwia Marek, Ryszard Pręcikowski, Maciej Kuś, M Patrycja Lelujko, Rosmary Blanco, Tomasz Trzciński, Arkadiusz Sitek, Maciej Malawski, Aneta Lisowska
Pubblicato in: AMIA Annu Symp Proc. 2024 Jan 11;2023:., 2023, Pagina/e 389–396
Editore: AMIA
DOI: 10.48550/arxiv.2302.03616

Automated glioma multiclass tumor classification

Autori: Monika Pytlarz, Kamil Wojnicki, Paulina Pilanc, Bożena Kamińska, Alessandro Crimi
Pubblicato in: Medical Imaging 2023: Digital and Computational Pathology, 2023, ISBN 9782151066047
Editore: SPIE
DOI: 10.1117/12.2654034

Reinforcement Explainability of ChatGPT Prompts by Embedding Breast Cancer Self-Screening Rules into AI Responses

Autori: Yousef Khan, Ahmed Abdeen Hamed
Pubblicato in: 2024 IEEE International Conference on Medical Artificial Intelligence (MedAI), 2024, Pagina/e 392-397
Editore: IEEE
DOI: 10.1109/medai62885.2024.00059

The Graph Database Interface: Scaling Online Transactional and Analytical Graph Workloads to Hundreds of Thousands of Cores

Autori: Maciej Besta, Robert Gerstenberger, Marc Fischer, Michal Podstawski, Nils Blach, Berke Egeli, Georgy Mitenkov, Wojciech Chlapek, Marek Michalewicz, Hubert Niewiadomski, Juergen Mueller, Torsten Hoefler
Pubblicato in: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, 2024, Pagina/e 1-18
Editore: ACM
DOI: 10.1145/3581784.3607068

LumiGauss: Relightable Gaussian Splatting in the Wild

Autori: Joanna Kaleta, Kacper Kania, Tomasz Trzcinski, Marek Kowalski
Pubblicato in: IEEE/CVF Winter Conference on Applications of Computer Vision, 2024
Editore: IEEE
DOI: 10.48550/arxiv.2408.04474

CXR-FL: Deep Learning-Based Chest X-ray Image Analysis Using Federated Learning

Autori: Ślazyk F, Jabłecki P, Malawski M, Płotka P., A. Lisowska
Pubblicato in: Computational Science – ICCS 2022, Numero 22nd International Conference, London, UK, June 21–23, 2022, Proceedings, Part II, 2022, ISBN 978-3-031-08753-0
Editore: Springer Cham
DOI: 10.1007/978-3-031-08754-7_50

POTHER: Patch-Voted Deep Learning-based Chest X-ray Bias Analysis for COVID-19 Detection

Autori: Szczepański T, Sitek A, Trzciński T, Płotka S
Pubblicato in: Computational Science – ICCS 2022. ICCS 2022. Lecture Notes in Computer Science, Numero vol 13351, 2022, ISBN 978-3-031-08753-0
Editore: Springer, Cham
DOI: 10.1007/978-3-031-08754-7_51

BabyNet: Residual Transformer Module for Birth Weight Prediction on Fetal Ultrasound Video

Autori: Płotka S, Grzeszczyk MK, Lipa M, Trzciński T, and Sitek A.
Pubblicato in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2022. MICCAI 2022. Lecture Notes in Computer Science, 2022, ISBN 978-3-031-16439-2
Editore: Springer, Cham
DOI: 10.1007/978-3-031-16440-8_34

Serverless Approach to Sensitivity Analysis of Computational Models

Autori: Piotr Kica, Magdalena Otta, Krzysztof Czechowicz, Karol Zając, Piotr Nowakowski, Andrew Narracott, Ian Halliday, Maciej Malawski
Pubblicato in: 2023 IEEE/ACM 23rd International Symposium on Cluster, Cloud and Internet Computing (CCGrid), 2023
Editore: IEEE
DOI: 10.1109/ccgrid57682.2023.00064

SimuScope: Realistic Endoscopic Synthetic Dataset Generation through Surgical Simulation and Diffusion Models

Autori: Sabina Martyniak, Joanna Kaleta, Diego Dall'Alba, Michał Naskręt, Szymon Płotka, Przemysław Korzeniowski
Pubblicato in: IEEE/CVF Winter Conference on Applications of Computer Vision, 2024
Editore: IEEE
DOI: 10.48550/arxiv.2412.02332

Leveraging ACC Resources for Medical Research

Autori: Piotr Nowakowski, Marian Bubak, Krzysztof Gądek, Marek Kasztelnik, Maciej Malawski, Jan Meizner, Adam Nowak, Piotr Połeć, Karol Zając, Taras Zhyhulin
Pubblicato in: 2023
Editore: Academic Computer Centre Cyfronet AGH

Multi-task Swin Transformer for Motion Artifacts Classification and Cardiac Magnetic Resonance Image Segmentation

Autori: Michal K. Grzeszczyk, Szymon Płotka, Arkadiusz Sitek
Pubblicato in: Statistical Atlases and Computational Modelling of the Heart Workshop (MICCAI 2022), 2022
Editore: Springer NAture
DOI: 10.48550/arxiv.2209.02470

Explainable Graph Neural Networks for EEG Classification and Seizure Detection in Epileptic Patients

Autori: Szymon Mazurek, Rosmary Blanco, Joan Falcó-Roget, Alessandro Crimi
Pubblicato in: 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024, Pagina/e 1-5
Editore: IEEE
DOI: 10.1109/isbi56570.2024.10635821

Style Transfer Between Microscopy and Magnetic Resonance Imaging Via Generative Adversarial Network in Small Sample Size Settings

Autori: Monika Pytlarz, Adrian Onicas, Alessandro Crimi
Pubblicato in: 2023 IEEE International Conference on Image Processing (ICIP), 2025, Pagina/e 1120-1124
Editore: IEEE
DOI: 10.1109/icip49359.2023.10222546

Sensitivity analysis of a model of lower limb haemodynamics

Autori: Otta M., Halliday I., Tsui J., Lim C., Struzik Z., Narracott A.
Pubblicato in: Computational Science – ICCS 2022, 2022, ISBN 978-3-031-08756-1
Editore: Springer Cham
DOI: 10.1007/978-3-031-08757-8_7

D-MiSo: Editing Dynamic 3D Scenes using Multi-Gaussians Soup

Autori: Joanna Waczyńska, Piotr Borycki, Joanna Kaleta, Sławomir Tadeja, Przemysław Spurek
Pubblicato in: Conference on Neural Information Processing Systems 2024, 2024
Editore: NeurIPS
DOI: 10.48550/arxiv.2405.14276

TabMixer: Noninvasive Estimation of the Mean Pulmonary Artery Pressure via Imaging and Tabular Data Mixing

Autori: Michal K. Grzeszczyk, Przemysław Korzeniowski, Samer Alabed, Andrew J. Swift, Tomasz Trzciński, Arkadiusz Sitek
Pubblicato in: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024, 2024, Pagina/e 670-680
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72086-4_63

TabAttention: Learning Attention Conditionally on Tabular Data

Autori: Michal K. Grzeszczyk, Szymon Płotka, Beata Rebizant, Katarzyna Kosińska-Kaczyńska, Michał Lipa, Robert Brawura-Biskupski-Samaha, Przemysław Korzeniowski, Tomasz Trzciński, Arkadiusz Sitek
Pubblicato in: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023, 2024, Pagina/e 347-357
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-43990-2_33

3D Reconstructions of Brain from MRI Scans Using Neural Radiance Fields

Autori: Khadija Iddrisu, Sylwia Malec, Alessandro Crimi
Pubblicato in: Lecture Notes in Computer Science, Artificial Intelligence and Soft Computing, 2023, Pagina/e 207-218
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-42508-0_19

EsmTemp - Transfer Learning Approach for Predicting Protein Thermostability

Autori: Adam Sułek, Jakub Jończyk, Patryk Orzechowski, Ahmed Abdeen Hamed, Marek Wodziński
Pubblicato in: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Pagina/e 187-194
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63759-9_23

Local Sensitivity Analysis of a Closed-Loop in Silico Model of the Human Baroregulation

Autori: Karolina Tlałka, Harry Saxton, Ian Halliday, Xu Xu, Daniel Taylor, Andrew Narracott, Maciej Malawski
Pubblicato in: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Pagina/e 173-187
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63772-8_17

Bayesian Filtered Generation of Post-surgical Brain Connectomes on Tumor Patients

Autori: J. Falco-Roget, A.Crimi
Pubblicato in: Imaging Systems for GI Endoscopy, and Graphs in Biomedical Image Analysis. ISGIE GRAIL 2022 2022. Lecture Notes in Computer Science, 2022
Editore: Springer, Cham
DOI: 10.1007/978-3-031-21083-9_8

Toward the Human Nanoscale Connectome: Neuronal Morphology Format, Modeling, and Storage Requirement Estimation

Autori: Wieslaw L. Nowinski
Pubblicato in: Lecture Notes in Computer Science, Computational Science – ICCS 2023, 2023, Pagina/e 691-698
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-36021-3_66

Autori: Jakub Klimczak, Ahmed Abdeen Hamed
Pubblicato in: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Pagina/e 257-265
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63775-9_18

Investigation of Energy-Efficient AI Model Architectures and Compression Techniques for “Green” Fetal Brain Segmentation

Autori: Szymon Mazurek, Monika Pytlarz, Sylwia Malec, Alessandro Crimi
Pubblicato in: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Pagina/e 61-74
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63772-8_5

Let Me DeCode You: Decoder Conditioning with Tabular Data

Autori: Tomasz Szczepański, Michal K. Grzeszczyk, Szymon Płotka, Arleta Adamowicz, Piotr Fudalej, Przemysław Korzeniowski, Tomasz Trzciński, Arkadiusz Sitek
Pubblicato in: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024, 2024, Pagina/e 228-238
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72384-1_22

MISS: Multiclass Interpretable Scoring Systems

Autori: Michal K. Grzeszczyk, Tomasz Trzciński, Arkadiusz Sitek
Pubblicato in: Proceedings of the 2024 SIAM International Conference on Data Mining (SDM), 2024, Pagina/e 55-63
Editore: Society for Industrial and Applied Mathematics
DOI: 10.1137/1.9781611978032.7

Modularity promotes excitation-inhibition balance in synaptically coupled neuronal networks

Autori: Janaki Raghavan, Zbigniew R. Struzik and Sitabhra Sinha
Pubblicato in: ICCS London 2022, 2022
Editore: ICCS

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