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CORDIS - Résultats de la recherche de l’UE
CORDIS

Centre for New Methods in Computational Diagnostics and Personalised Therapy

Livrables

Documents, reports (6)
Statute of the Centre

The statute will define the legal regulations and organization of the Centre, and will be a notarized document approved by the appropriate authority.

Ecosystem Analysis

Analysis of current framework conditions for the development of in silico medicine in Poland, challenges and opportunities of the system.

Spin-off Culture Principles

A report on the principles of the spinoff and startup culture to be incubated at Sano towards the active selfsustainability model

IP Management Policy

A detailed plan of IP Management with focus on in silico medicine techniques and research data developed by Sano

Human Talent Management Policies

Document describing the best practices on human talent management policies to guarantee the success of Sano.

Research Exchange Programme and Travel Policies

A detailed description of the travel policies with the special focus on research exchange programme.

Websites, patent fillings, videos etc. (1)
Project Website

A modern and responsive institutional website, providing a single entry point to all information about the Centre.

Publications

Monographic books (1)
Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries

Auteurs: A. Crimi, S. Bakas
Publié dans: Lecture Notes in Computer Science (LNCS, volume 12963), BrainLes: International MICCAI Brainlesion Workshop, 2022
Éditeur: Springer Nature
DOI: 10.1007/978-3-031-08999-2

Peer reviewed articles (44)
Artificial intelligence in the diagnosis of necrotising enterocolitis in newborns

Auteurs: Arkadiusz Sitek, Joanna Seliga-Siwecka, Szymon Płotka, Michal K. Grzeszczyk, Szymon Seliga, Krzysztof Włodarczyk, Renata Bokiniec
Publié dans: (Nature) Pediatric Research, 2022, ISSN 0031-3998
Éditeur: Lippincott Williams & Wilkins Ltd.
DOI: 10.1038/s41390-022-02322-2

Towards efficient GPGPU Cellular Automata model implementation using persistent active cells

Auteurs: Paweł Renc, Tomasz Pęcak, Alessio De Rango, William Spataro, Giuseppe Mendicino, Jarosław Wąs
Publié dans: Journal of Computational Science, 2022, ISSN 1877-7503
Éditeur: Elsevier BV
DOI: 10.1016/j.jocs.2021.101538

Improvements in Quality Control and Library Preparation for Targeted Sequencing Allowed Detection of Potentially Pathogenic Alterations in Circulating Cell-Free DNA Derived from Plasma of Brain Tumor Patients

Auteurs: Paulina Szadkowska,Adria-Jaume Roura,Bartosz Wojtas,Kamil Wojnicki,Sabina Licholai,Tomasz Waller,Tomasz Gubala,Kacper Zukowski,Michal Karpeta,Kinga Wilkus,Wojciech Kaspera,Sergiusz Nawrocki andBozena Kaminska
Publié dans: Cancers, 2022, ISSN 2072-6694
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14163902

Preface to the Special Issue on Software Engineering

Auteurs: Marian Bubak, Maciej Malawski, Renata G. Słota
Publié dans: Computing and Informatics, 2021, ISSN 1335-9150
Éditeur: Slovak Academic Press Ltd.
DOI: 10.31577/cai_2021_4_729

Longitudinal Gray Matter Trajectories in Pediatric Mild Traumatic Brain Injury

Auteurs: Ashley Ware, Catherine Lebel, Adrian Onicas et al
Publié dans: Neurology, 2023, ISSN 0028-3878
Éditeur: Lippincott Williams & Wilkins Ltd.
DOI: 10.1212/wnl.0000000000207508

Emergent Computations in Trained Neural Networks and Real Brains

Auteurs: Néstor Parga, Luis Serrano-Fernández, and Joan Falcó-Roget
Publié dans: Journal of Instrumentation, 2023, ISSN 1748-0221
Éditeur: Institute of Physics
DOI: 10.1088/1748-0221/18/02/c02060

Cell image augmentation for classification task using GANs on Pap Smear Dataset

Auteurs: Jakub Zak, Michal K Grzeszczyk, Antonina Pater, Lukasz Roszkowiak, Krzysztof Siemion, Anna Korzynska
Publié dans: Biocybernetics and Biomedical Engineering Journal (IF: 5.687), 2022, ISSN 0208-5216
Éditeur: Polish Scientific Publishers PWN
DOI: 10.1016/j.bbe.2022.07.003

A note on “Individual differences, missing sulci, and nomenclature: A comment on ‘On presentation of the human cerebral sulci from inside the cerebrum’”

Auteurs: Wieslaw L. Nowinski
Publié dans: Journal of Anatomy, 2023, ISSN 1469-7580
Éditeur: Wiley
DOI: 10.1111/joa.13930

Altered longitudinal structural connectome in pediatric mild traumatic brain injury: an A-CAP study

Auteurs: Ashley Ware, Adrian Onicas et al
Publié dans: Brain Communications, 2023, ISSN 2632-1297
Éditeur: Oxford University Press
DOI: 10.1093/braincomms/fcad173

Computing performance requirements for web service compositions

Auteurs: Antonio García-Domínguez , Francisco Palomo-Lozano , Inmaculada Medina-Bulo, Alfredo Ibias , Manuel Núñez
Publié dans: Computer Standards & Interfaces, 2023, ISSN 0920-5489
Éditeur: Elsevier BV
DOI: 10.1016/j.csi.2022.103664

Femoral neck strain prediction during level walking using a combined musculoskeletal and finite element model approach

Auteurs: Zainab Altai; Erica Montefiori; Bart van Veen; Margaret Paggiosi; Eugene V. McCloskey; Marco Viceconti; Claudia Mazzà; Xinshan Li
Publié dans: PLoS ONE, Numéro 2, 2021, ISSN 1549-1277
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0245121

Serverless Computing for Scientific Applications

Auteurs: M. Malawski, B. Balis
Publié dans: IEEE Internet Computing, Numéro ( Volume: 26, Numéro: 4, 01 July-Aug. 2022), 2022, ISSN 1089-7801
Éditeur: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mic.2022.3168810

COVID-19 Drug Repurposing: a Network-based Framework for Exploring BioMedical Literature and Clinical Trials for Possible Treatments

Auteurs: Ahmed Abdeen Hamed *, Tamer E. Fandy, Karolina L. Tkaczuk, Byung Suk Lee
Publié dans: Pharmaceutics, 2022, ISSN 1999-4923
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14030567

Relating Global and Local Connectome Changes to Dementia and Targeted Gene Expression in Alzheimer's Disease

Auteurs: Samar S. M. Elsheikh, Emile R. Chimusa, Alzheimer's Disease Neuroimaging Initiative, Nicola J. Mulder and Alessandro Crimi
Publié dans: Frontiers in Human Neuroscience, 2021, ISSN 1662-5161
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fnhum.2021.761424

Squeeziness for Non-Deterministic Systems

Auteurs: Alfredo Ibias, Manuel Núñez
Publié dans: Information and Software Technology, 2023, ISSN 0950-5849
Éditeur: Elsevier BV
DOI: 10.1016/j.infsof.2023.107173

Vascular phenotypes in early hypertension

Auteurs: Eleanor Murray, Christian Delles, Patryk Orzechowski, Pawel RENC, Arkadiusz SITEK, Joost Wagenaar, and Tomasz Guzik
Publié dans: Journal of Human Hypertension, 2022, ISSN 0950-9240
Éditeur: Nature Publishing Group
DOI: 10.1038/s41371-022-00794-7

"""SATO (IDEAS expAnded wiTh BCIO): workflow for designers of patient-centered mobile health behaviourchange intervention applications"""

Auteurs: Aneta Lisowska, Szymon Wilk, Mor Peleg
Publié dans: Journal of Biomedical Informatics, 2023, ISSN 1532-0464
Éditeur: Academic Press
DOI: 10.1016/j.jbi.2022.104276

Current Trends in Software Engineering Bachelor Theses

Auteurs: Jacek Dajda, Michał Idzik, Jakub Sroka, Mikołaj Sikora Wiktor Pawłowski, Maciej Smo lka, Przemysław Jabłecki Filip Ślazyk, Maciej Malawski, Emilia Majerz Aleksandra Pasternak, Witold Dzwinel
Publié dans: Computing and Informatics, 2021, ISSN 1335-9150
Éditeur: Slovak Academic Press Ltd.
DOI: 10.31577/cai_2021_4_930

Artificial Intelligence in PET: an Industry Perspective

Auteurs: Sitek, Arkadiusz; Ahn, Sangtae; Asma, Evren; Chandler, Adam; Ihsani, Alvin; Prevrhal, Sven; Rahmim, Arman; Saboury, Babak; Thielemans, Kris
Publié dans: PET Clinics, Numéro August 03, 2021, 2021, ISSN 1556-8598
Éditeur: Elsevier Saunders
DOI: 10.1016/j.cpet.2021.06.006

Dependence of Protein Structure on Environment: FOD Model Applied to Membrane Proteins

Auteurs: Irena Roterman, Katarzyna Stapor, Krzysztof Gądek, Tomasz Gubała , Piotr Nowakowski, Piotr Fabian and Leszek Konieczny
Publié dans: Membrane Biological Function in Health and Disease, Numéro Membranes 2022, 12(1), 50, 2021, ISSN 2077-0375
Éditeur: Molecular Diversity Preservation International
DOI: 10.3390/membranes12010050

Modelling The Hemodynamics of Coronary Ischemia

Auteurs: Baraikan, Abdulaziz Al, Krzysztof Czechowicz, Paul D. Morris, Ian Halliday, Rebecca C. Gosling, Julian P. Gunn, Andrew J. Narracott, Gareth Williams, Pankaj Garg, Maciej Malawski, and et al. 
Publié dans: Fluids, 2023, ISSN 2311-5521
Éditeur: MDPI
DOI: 10.3390/fluids8050159

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge

Auteurs: Gabriel Girard, Jonathan Rafael-Patiño, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak et al.
Publié dans: NeuroImage, 2023, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2023.120231

MiR-191 as a Key Molecule in Aneurysmal Aortic Remodeling

Auteurs: Sabina Lichołai, Dorota Studzińska, Hanna Plutecka, Tomasz Gubała, Wojciech Szczeklik and Marek Sanak
Publié dans: Biomolecules, 2021, ISSN 2218-273X
Éditeur: MDPI
DOI: 10.3390/biom11111611

Toward the Observability of Cloud-Native Applications: The Overview of the State-of-the-Art

Auteurs: Joanna Kosinska, Bartosz Balis, Marek Konieczny, Maciej Malawski, Slawomir Zielinski
Publié dans: IEEE Access, 2023, ISSN 2169-3536
Éditeur: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2023.3281860

Improved myocardial blood flow estimation with residual activity correction and motion correction in 18F-flurpiridaz PET myocardial perfusion imaging

Auteurs: Yuka Otaki, Serge D. Van Kriekinge, Chih-Chun Wei, Paul Kavanagh, Ananya Singh, Tejas Parekh, Marcelo Di Carli, Jamshid Maddahi, Arkadiusz Sitek, Christopher Buckley, Daniel S. Berman & Piotr J. Slomka
Publié dans: European Journal of Nuclear Medicine and Molecular Imaging, 2021, ISSN 1619-7070
Éditeur: Springer Verlag
DOI: 10.1007/s00259-021-05643-2

The Use of Digital Coronary Phantoms for the Validation of Arterial Geometry Reconstruction and Computation of Virtual FFR

Auteurs: Pederzani, Giulia, Krzysztof Czechowicz, Nada Ghorab, Paul D. Morris, Julian P. Gunn, Andrew J. Narracott, David Rodney Hose, and Ian Halliday
Publié dans: Fluids, 2023, ISSN 2311-5521
Éditeur: MDPI
DOI: 10.3390/fluids7060201

A Stochastic Model of Translocation of Knotted Proteins

Auteurs: Karol Capała, Piotr Szymczak
Publié dans: Physical Review E, 2022, ISSN 2470-0045
Éditeur: American Physical Society
DOI: 10.1103/physreve.106.054406

SaNDA: a Small and iNcomplete Dataset Analyser

Auteurs: Alfredo Ibias, Varun Ravi Varma, Karol Capała, Luca Gherardini, Jose Sousa
Publié dans: Information Sciences, 2023, ISSN 0020-0255
Éditeur: Elsevier BV
DOI: 10.1016/j.ins.2023.119078

O pewnym modelu zawijania białek

Auteurs: Marcin WIERZBIŃSKI, Karolina L. TKACZUK, Alessandro CRIMI
Publié dans: DeltAmi, 2023, ISSN 0137-3005
Éditeur: DeltAmi

Nuclear Medicine and Artificial Intelligence: Best Practices for Algorithm Development

Auteurs: Tyler J. Bradshaw, Ronald Boellaard, Joyita Dutta, Abhinav K. Jha, Paul Jacobs, Quanzheng Li, Chi Liu, Arkadiusz Sitek, Babak Saboury, Peter J.H. Scott, Piotr J. Slomka, John J. Sunderland, Richard L. Wahl, Fereshteh Yousefirizi, Sven Zuehlsdorff, Arman Rahmim and Irène Buvat
Publié dans: Journal of Nuclear Medicine, 2021, ISSN 0161-5505
Éditeur: Kexue Chubaneshe/Science Press
DOI: 10.2967/jnumed.121.262567

Macrophage Resistance to Ionizing Radiation Exposure Is Accompanied by Decreased Cathepsin D and Increased Transferrin Receptor 1 Expression

Auteurs: Ana Teresa Pinto, Ana Beatriz Machado, Hugo Osório, Marta Laranjeiro Pinto, Rui Vitorino, Gonçalo Justino, Cátia Santa, Flávia Castro, Tânia Cruz, Carla Rodrigues, Jorge Lima, José Luís R Sousa, Ana Patrícia Cardoso, Rita Figueira, Armanda Monteiro, Margarida Marques, Bruno Manadas, Jarne Pauwels, Kris Gevaert, Marc Mareel, Sónia Rocha, Tiago Duarte, Maria José Oliveira
Publié dans: Cancers, 2022, ISSN 2072-6694
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers15010270

Justifying Short-Term Load Forecasts Obtained with the Use of Neural Models

Auteurs: Tadeusz A. Grzeszczyk 1,Michal K. Grzeszczyk
Publié dans: Energies, Numéro 2022, 15(5), 2022, ISSN 1996-1073
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/en15051852

On presentation of the human cerebral sulci from inside of the cerebrum

Auteurs: Wieslaw L. Nowinski
Publié dans: Journal of Anatomy 2023, 2023, ISSN 1469-7580
Éditeur: Wiley
DOI: 10.1111/joa.13880

On the Dependence of Prion and Amyloid Structure on the Folding Environment

Auteurs: Irena Roterman, Katarzyna Stapor, Krzysztof Gądek, Tomasz Gubała , Piotr Nowakowski, Piotr Fabian and Leszek Konieczny
Publié dans: International Journal of Molecule Sciences, Numéro Int. J. Mol. Sci. 2021, 22(24), 13494;, 2021, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms222413494

Longitudinal Functional Connectome In Pediatric Concussion: An A-CAP Study

Auteurs: Adrian Onicas et al
Publié dans: Journal of Neurotrauma, 2023, ISSN 0897-7151
Éditeur: Mary Ann Liebert Inc.
DOI: 10.1089/neu.2023.0183

AI & COVID-19

Auteurs: Davide Bacciu, Emanuela Girardi, Marco Maratea and Jose Sousa
Publié dans: Intelligenza Artificiale, 2022, ISSN 1724-8035
Éditeur: IOS Press BV
DOI: 10.3233/ia-210121

Comprehensive Analysis of Circular RNAs in Endothelial Cells

Auteurs: Lichołai, S.; Studzińska, D.; Plutecka, H.; Gubała, T.; Sanak, M.
Publié dans: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms241210025

Deep learning fetal ultrasound video model match human observers in biometric measurements

Auteurs: Szymon Płotka, Adam Klasa, Aneta Lisowska, Joanna Seliga-Siwecka, Michał Lipa, Tomasz Trzciński and Arkadiusz Sitek
Publié dans: Physics in Medicine & Biology, 2022, ISSN 1361-6560
Éditeur: Published on behalf of Institute of Physics and Engineering in Medicine by IOP Publishing Ltd
DOI: 10.1088/1361-6560/ac4d85

Artificial intelligence for dementia—Applied models and digital health

Auteurs: Donald M. Lyall, Andrey Kormilitzin, Claire Lancaster, Jose Sousa, Fanny Petermann-Rocha, Christopher Buckley, Eric L. Harshfield, Matthew H. Iveson, Christopher R. Madan, Ríona McArdle, Danielle Newby, Vasiliki Orgeta, Eugene Tang, Stefano Tamburin, Lokendra S. Thakur, Ilianna Lourida, The Deep Dementia Phenotyping (DEMON) Network, David J. Llewellyn, Janice M. Ranson
Publié dans: Alzheimer's & Dementia: Journal of the Alzheimer's Association, 2023, ISSN 1552-5260
Éditeur: Elsevier BV
DOI: 10.1002/alz.13391

Finite element analysis informed variable selection for femoral fracture risk prediction.

Auteurs: Mark Taylor; Marco Viceconti; Pinaki Bhattacharya; Xinshan Li
Publié dans: Journal of the Mechanical Behavior of Biomedical Materials, Numéro 3, 2021, ISSN 1751-6161
Éditeur: Elsevier BV
DOI: 10.1016/j.jmbbm.2021.104434

COVID-19 Symptoms App Analysis to Foresee Healthcare Impacts: Evidence from Northern Ireland

Auteurs: José Sousa, JoãoBarata, Hugo C van Woerdend, Frank Kee
Publié dans: Applied Soft Computing, 2022, ISSN 1568-4946
Éditeur: Elsevier BV
DOI: 10.1016/j.asoc.2021.108324

Personalised 3D assessment of trochanteric soft tissues improves HIP fracture classification accuracy

Auteurs: Aldieri, Alessandra; Terzini, Mara; Audenino, Alberto; Bignardi, Cristina; Paggiosi, Margaret; Eastell, Richard; Viceconti, Marco; Bhattacharya, Pinaki
Publié dans: Crossref, Numéro 2, 2022, ISSN 0090-6964
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10439-022-02924-1

Community Detection in Brain Connectome using Quantum Annealer Devices

Auteurs: M.Wierzbinski, J.Falco-Roget, A.Crimi
Publié dans: Scientific Reports, 2023, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-023-30579-y

Decentralized approaches for Autonomous Vehicles Coordination

Auteurs: L. Gherardini, G. Cabri, M. Montangero
Publié dans: Internet Technology Letters, 2022, ISSN 2476-1508
Éditeur: John Wiley & Sons, Ltd.
DOI: 10.1002/itl2.398

Conference proceedings (28)
Mining Literature-Based Knowledge Graph for Predicting Combination Therapeutics: A COVID-19 Use Case

Auteurs: Ahmed Abdeen Hamed; Jakub Jonczyk; Mohammad Zaiyan Alam; Ewa Deelman; Byung Suk Lee
Publié dans: 2023
Éditeur: IEEE Xplore
DOI: 10.1109/ickg55886.2022.00018

FetalNet: Multi-Task Deep Learning Framework for Fetal Ultrasound Biometric Measurements

Auteurs: Płotka, Szymon & Wlodarczyk, Tomasz & Klasa, Adam & Lipa, Michal & Sitek, Arkadiusz & Trzcinski, Tomasz
Publié dans: 2021
Éditeur: Springer, Cham

Subgrouping and personalized risk evaluation for outcome prediction in ANCA associated vasculitis (AAV)

Auteurs: K. Wójcik, A. Ćmiel, T. Satława, S. Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanows
Publié dans: Proceedings of the 20th International Vasculitis and ANCA workshop 3-6th April 2022, 2022
Éditeur: VASCULITIS2022
DOI: 10.5281/zenodo.6381940

Designing Personalised Gamification of mHealth Survey Applications

Auteurs: Paulina Adamczyk, Sylwia Marek, , Ryszard Precikowski, Maciej Kus, Michał Grzeszczyk, Maciej Malawski, Aneta Lisowska
Publié dans: roceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2023) - HEALTHINF, 2023
Éditeur: SciTePres
DOI: 10.5220/0011603800003414

Estimation of the Impact of COVID-19 Pandemic Lockdowns on Breast Cancer Deaths and Costs in Poland using Markovian Monte Carlo Simulation

Auteurs: Magdalena Dul, Michal K. Grzeszczyk, Ewelina Nojszewska, Arkadiusz Sitek
Publié dans: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023, ISBN 978-3-031-36023-7
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-36024-4_10

Digital twin simulation development and execution on HPC infrastructures.

Auteurs: Marek Kasztelnik, Piotr Nowakowski, Jan Meizner, Maciej Malawski, Adam Nowak, Krzysztof Gadek, Karol Zajac, Antonino Amedeo La Mattina & Marian Bubak
Publié dans: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023, ISBN 978-3-031-36020-6
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-36021-3_2

Multi-institutional evaluation of a deep learning model for fully automated detection of aortic aneurysms in contrast and non-contrast CT

Auteurs: Xie Y, Graf B, Farzam P, Baker B, Lamoureux C, Sitek A
Publié dans: Proceedings Volume 12033, Medical Imaging 2022: Computer-Aided Diagnosis, 2022
Éditeur: Society of Photo-Optical Instrumentation Engineers
DOI: 10.1117/12.2607877

PERSONALIZED RISK EVALUATION FOR OUTCOME PREDICTION IN ANCA ASSOCIATED VASCULITIS (AAV) USING LATENT CLASS ANALYSIS AND MACHINE LEARNING.

Auteurs: K. Wójcik, A. Ćmiel, T. Satława, S. Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanows
Publié dans: Annals of the Rheumatic Diseases 2022;81:367., 2022
Éditeur: BMJ
DOI: 10.1136/annrheumdis-2022-eular.1089

Effect of feature discretization on classification performance of explainable scoring-based machine learning model

Auteurs: Pajor A, Sniezynski B, Zolnierek J, Sitek A
Publié dans: Computational Science – ICCS 2022. ICCS 2022. Lecture Notes in Computer Science,, 2022, ISBN 978-3-031-08756-1
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-08757-8_9

Resting State Brain Connectivity Analysis from EEG and FNIRS Signals

Auteurs: R.Blanco, C. Koba, A. Crimi
Publié dans: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-36021-3_58

Using Unused: Non-Invasive Dynamic FaaS Infrastructure with HPC-Whisk.

Auteurs: Bartłomiej Przybylski, Maciej Pawlik, Paweł Żuk, Bartłomiej Łagosz, Maciej Malawski, Krzysztof Rzadca
Publié dans: SC '22: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis, 2022
Éditeur: IEEE Press
DOI: 10.5555/3571885.3571938

Toward the Human Nanoscale Connectome: Neuronal Morphology Format, Modeling, and Storage Requirement Estimation

Auteurs: Wiesław L. Nowiński
Publié dans: (eds) Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-36021-3_66

Are Evolutionary Classifiers Any Good? A Comparative Study on a Synthetic Machine Learning Benchmark.

Auteurs: Orzechowski P, Renc P, Moore JH, Sitek A, Was J, Wagenaar J
Publié dans: GECCO '22: Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2022, ISBN 978-1-4503-9268-6
Éditeur: Association for Computing Machinery
DOI: 10.1145/3520304.3529056

Virtual Reality Simulator for Fetoscopic Spina Bifida Repair Surgery

Auteurs: Przemysław Korzeniowski; Szymon Płotka; Robert Brawura-Biskupski-Samaha; Arkadiusz Sitek et al.
Publié dans: 2022 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2022
Éditeur: IEEE
DOI: 10.1109/iros47612.2022.9981920

Using Deep Learning to Detect Anomalies in Traffic Flow

Auteurs: Méndez, M., Ibias, A., Núñez, M.
Publié dans: 2022
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-21743-2_24

Automated glioma multiclass tumor classification

Auteurs: Monika Pytlarz, Kamil Wojnicki, Paulina Pilanc, Bożena Kamińska, Alessandro Crimi
Publié dans: Medical Imaging 2023: Digital and Computational Pathology, 2023, ISBN 9782151066047
Éditeur: SPIE
DOI: 10.1117/12.2654034

CXR-FL: Deep Learning-Based Chest X-ray Image Analysis Using Federated Learning

Auteurs: Ślazyk F, Jabłecki P, Malawski M, Płotka P., A. Lisowska
Publié dans: Computational Science – ICCS 2022, Numéro 22nd International Conference, London, UK, June 21–23, 2022, Proceedings, Part II, 2022, ISBN 978-3-031-08753-0
Éditeur: Springer Cham
DOI: 10.1007/978-3-031-08754-7_50

Noninvasive Estimation of Mean Pulmonary Artery Pressure Using MRI, Computer Models, and Machine Learning

Auteurs: Grzeszczyk MK, Satława T, Lungu A, Swift A, Narracott A, Hose R, Trzcinski T, Sitek A
Publié dans: Computational Science – ICCS 2022. ICCS 2022. Lecture Notes in Computer Science, 2022, ISBN 978-3-031-08756-1
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-08757-8_2

POTHER: Patch-Voted Deep Learning-based Chest X-ray Bias Analysis for COVID-19 Detection

Auteurs: Szczepański T, Sitek A, Trzciński T, Płotka S
Publié dans: Computational Science – ICCS 2022. ICCS 2022. Lecture Notes in Computer Science, Numéro vol 13351, 2022, ISBN 978-3-031-08753-0
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-08754-7_51

BabyNet: Residual Transformer Module for Birth Weight Prediction on Fetal Ultrasound Video

Auteurs: Płotka S, Grzeszczyk MK, Lipa M, Trzciński T, and Sitek A.
Publié dans: Medical Image Computing and Computer Assisted Intervention – MICCAI 2022. MICCAI 2022. Lecture Notes in Computer Science, 2022, ISBN 978-3-031-16439-2
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-16440-8_34

Serverless Approach to Sensitivity Analysis of Computational Models

Auteurs: Piotr Kica, Magdalena Otta, Krzysztof Czechowicz, Karol Zając, Piotr Nowakowski, Andrew Narracott, Ian Halliday, Maciej Malawski
Publié dans: 2023 IEEE/ACM 23rd International Symposium on Cluster, Cloud and Internet Computing (CCGrid), 2023
Éditeur: IEEE
DOI: 10.1109/ccgrid57682.2023.00064

Federated Learning in the Cloud for Analysis of Medical Images - Experience with Open Source Frameworks

Auteurs: Jabłecki P., Ślazyk F., Malawski M.
Publié dans: 2021, ISBN 978-3-030-90873-7
Éditeur: Springer, Cham
DOI: 10.1007/978-3-030-90874-4_11

How to Improve Digital Wellbeing Interventions? Preliminary Study of Factors Affecting Intervention Engagement, Impact, and Habit Formation

Auteurs: Lisowska A. , S.Lavy, Sz.Wilk, M.Peleg
Publié dans: AMIA 2022, 2022
Éditeur: AMIA

Leveraging ACC Resources for Medical Research

Auteurs: Piotr Nowakowski, Marian Bubak, Krzysztof Gądek, ​Marek Kasztelnik, Maciej Malawski, Jan Meizner, ​Adam Nowak, Piotr Połeć, Karol Zając, Taras Zhyhulin​
Publié dans: 2023
Éditeur: Academic Computer Centre Cyfronet AGH

Multi-task Swin Transformer for Motion Artifacts Classification and Cardiac Magnetic Resonance Image Segmentation

Auteurs: Michal K. Grzeszczyk, Szymon Płotka, Arkadiusz Sitek
Publié dans: Statistical Atlases and Computational Modelling of the Heart Workshop (MICCAI 2022), 2022
Éditeur: Springer NAture
DOI: 10.48550/arxiv.2209.02470

Context in medical imaging: the case of focal liver lesion classification

Auteurs: Raboh, Moshe; Levanony, Dana; Dufort, Paul; Sitek, Arkadiusz
Publié dans: Medical Imaging 2022: Image Processing, Numéro PROCEEDINGS VOLUME 12032 SPIE MEDICAL IMAGING | 20 FEBRUARY - 28 MARCH 2022, 2022, ISBN 9781510649392
Éditeur: SPIE - International Society for Optics and Photonics
DOI: 10.1117/12.2609385

Towards Observability in Scientific Computing

Auteurs: Bartosz Baliś, Albert Kuźma, Łukasz Wroński
Publié dans: 2023
Éditeur: Academic Computer Centre Cyfronet AGH

Sensitivity analysis of a model of lower limb haemodynamics

Auteurs: Otta M., Halliday I., Tsui J., Lim C., Struzik Z., Narracott A.
Publié dans: Computational Science – ICCS 2022, 2022, ISBN 978-3-031-08756-1
Éditeur: Springer Cham
DOI: 10.1007/978-3-031-08757-8_7

Book chapters (1)
Bayesian Filtered Generation of Post-surgical Brain Connectomes on Tumor Patients

Auteurs: J. Falco-Roget, A.Crimi
Publié dans: Imaging Systems for GI Endoscopy, and Graphs in Biomedical Image Analysis. ISGIE GRAIL 2022 2022. Lecture Notes in Computer Science, 2022
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-21083-9_8

Other (1)
Modularity promotes excitation-inhibition balance in synaptically coupled neuronal networks

Auteurs: Janaki Raghavan, Zbigniew R. Struzik and Sitabhra Sinha
Publié dans: ICCS London 2022, 2022
Éditeur: ICCS

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