Centre for New Methods in Computational Diagnostics and Personalised Therapy

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Statute of the Centre

The statute will define the legal regulations and organization of the Centre, and will be a notarized document approved by the appropriate authority.

Ecosystem Analysis

Analysis of current framework conditions for the development of in silico medicine in Poland, challenges and opportunities of the system.

Spin-off Culture Principles

A report on the principles of the spinoff and startup culture to be incubated at Sano towards the active selfsustainability model

IP Management Policy

A detailed plan of IP Management with focus on in silico medicine techniques and research data developed by Sano

Human Talent Management Policies

Document describing the best practices on human talent management policies to guarantee the success of Sano.

Research Exchange Programme and Travel Policies

A detailed description of the travel policies with the special focus on research exchange programme.

Research and Development Evaluation Review Report

The final evaluation of R&D activities and results of Sano, with recommendations towards sustainability.

Project Website

A modern and responsive institutional website, providing a single entry point to all information about the Centre.

Publications

Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries

Auteurs: A. Crimi, S. Bakas
Publié dans: Lecture Notes in Computer Science (LNCS, volume 12963), BrainLes: International MICCAI Brainlesion Workshop, 2022
Éditeur: Springer Nature
DOI: 10.1007/978-3-031-08999-2

Artificial intelligence in the diagnosis of necrotising enterocolitis in newborns

Auteurs: Arkadiusz Sitek, Joanna Seliga-Siwecka, Szymon Płotka, Michal K. Grzeszczyk, Szymon Seliga, Krzysztof Włodarczyk, Renata Bokiniec
Publié dans: (Nature) Pediatric Research, 2022, ISSN 0031-3998
Éditeur: Lippincott Williams & Wilkins Ltd.
DOI: 10.1038/s41390-022-02322-2

Improvements in Quality Control and Library Preparation for Targeted Sequencing Allowed Detection of Potentially Pathogenic Alterations in Circulating Cell-Free DNA Derived from Plasma of Brain Tumor Patients

Auteurs: Paulina Szadkowska,Adria-Jaume Roura,Bartosz Wojtas,Kamil Wojnicki,Sabina Licholai,Tomasz Waller,Tomasz Gubala,Kacper Zukowski,Michal Karpeta,Kinga Wilkus,Wojciech Kaspera,Sergiusz Nawrocki andBozena Kaminska
Publié dans: Cancers, 2022, ISSN 2072-6694
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14163902

The EurValve model execution environment

Auteurs: M. Bubak, K. Czechowicz, T. Gubała, D. R. Hose, M. Kasztelnik, M. Malawski, J. Meizner, P. Nowakowski, S. Wood
Publié dans: Interface Focus, Numéro 11, 2021, Page(s) 20200006, ISSN 2042-8898
Éditeur: Royal Society Publishing
DOI: 10.1098/rsfs.2020.0006

Preface to the Special Issue on Software Engineering

Auteurs: Marian Bubak, Maciej Malawski, Renata G. Słota
Publié dans: Computing and Informatics, 2021, ISSN 1335-9150
Éditeur: Slovak Academic Press Ltd.
DOI: 10.31577/cai_2021_4_729

Emergent Computations in Trained Neural Networks and Real Brains

Auteurs: Néstor Parga, Luis Serrano-Fernández, and Joan Falcó-Roget
Publié dans: Journal of Instrumentation, 2023, ISSN 1748-0221
Éditeur: Institute of Physics
DOI: 10.1088/1748-0221/18/02/c02060

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

Auteurs: Cameron Martino, Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia, Feryel Soualmia, Alex E. Clark, Aaron F. Garretson, Clarisse A. Marotz, Se Jin Song, Stephen Wandro, Livia S. Zaramela, Rodolfo A. Salido, Qiyun Zhu, Erick Armingol, Yoshiki Vázquez-Baeza, Daniel McDonald, James T. Sorrentino, Bryn Taylor, Pedro Belda-Ferre, Promi Das, Farhana Ali, Che
Publié dans: mBio, 2025, ISSN 2150-7511
Éditeur: ASM
DOI: 10.1128/mbio.04015-24

Quaternion double random phase encoding for privacy-preserving cancelable biometrics

Auteurs: Mahmoud Nasr, Adam Piórkowski, Fathi E. Abd El-Samie
Publié dans: Multimedia Tools and Applications, Numéro 83, 2024, Page(s) 85065-85078, ISSN 1573-7721
Éditeur: Springer
DOI: 10.1007/s11042-024-18621-1

Functional and structural reorganization in brain tumors: a machine learning approach using desynchronized functional oscillations

Auteurs: Joan Falcó-Roget, Alberto Cacciola, Fabio Sambataro, Alessandro Crimi
Publié dans: Communications Biology, Numéro 7, 2024, ISSN 2399-3642
Éditeur: Springer Nature
DOI: 10.1038/s42003-024-06119-3

End-to-End Stroke Imaging Analysis Using Effective Connectivity and Interpretable Artificial Intelligence

Auteurs: Wojciech Ciezobka, Joan Falcó-Roget, Cemal Koba, Alessandro Crimi
Publié dans: IEEE Access, Numéro 13, 2025, Page(s) 10227-10239, ISSN 2169-3536
Éditeur: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2025.3529179

Minimal data requirement for realistic endoscopic image generation with Stable Diffusion

Auteurs: Joanna Kaleta, Diego Dall’Alba, Szymon Płotka, Przemysław Korzeniowski
Publié dans: International Journal of Computer Assisted Radiology and Surgery, Numéro 19, 2024, Page(s) 531-539, ISSN 1861-6429
Éditeur: Springer Nature
DOI: 10.1007/s11548-023-03030-w

BabyNet＋＋: Fetal birth weight prediction using biometry multimodal data acquired less than 24 hours before delivery

Auteurs: Szymon Płotka, Michal K. Grzeszczyk, Robert Brawura-Biskupski-Samaha, Paweł Gutaj, Michał Lipa, Tomasz Trzciński, Ivana Išgum, Clara I. Sánchez, Arkadiusz Sitek
Publié dans: Computers in Biology and Medicine, Numéro 167, 2024, Page(s) 107602, ISSN 0010-4825
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.compbiomed.2023.107602

A note on “Individual differences, missing sulci, and nomenclature: A comment on ‘On presentation of the human cerebral sulci from inside the cerebrum’”

Auteurs: Wieslaw L. Nowinski
Publié dans: Journal of Anatomy, 2023, ISSN 1469-7580
Éditeur: Wiley
DOI: 10.1111/joa.13930

Altered longitudinal structural connectome in pediatric mild traumatic brain injury: an A-CAP study

Auteurs: Ashley Ware, Adrian Onicas et al
Publié dans: Brain Communications, 2023, ISSN 2632-1297
Éditeur: Oxford University Press
DOI: 10.1093/braincomms/fcad173

Computing performance requirements for web service compositions

Auteurs: Antonio García-Domínguez , Francisco Palomo-Lozano , Inmaculada Medina-Bulo, Alfredo Ibias , Manuel Núñez
Publié dans: Computer Standards & Interfaces, 2023, ISSN 0920-5489
Éditeur: Elsevier BV
DOI: 10.1016/j.csi.2022.103664

Femoral neck strain prediction during level walking using a combined musculoskeletal and finite element model approach

Auteurs: Zainab Altai; Erica Montefiori; Bart van Veen; Margaret Paggiosi; Eugene V. McCloskey; Marco Viceconti; Claudia Mazzà; Xinshan Li
Publié dans: PLoS ONE, Numéro 2, 2021, ISSN 1549-1277
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0245121

Reshaped functional connectivity gradients in acute ischemic stroke

Auteurs: Cemal Koba, Joan Falcó-Roget, Alessandro Crimi
Publié dans: NeuroImage: Clinical, Numéro 45, 2025, Page(s) 103755, ISSN 2213-1582
Éditeur: Elsevier BV
DOI: 10.1016/j.nicl.2025.103755

Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results

Auteurs: Kelly Payette, Céline Steger, Roxane Licandro, Priscille De Dumast, Hongwei Bran Li, Matthew Barkovich, Liu Li, Maik Dannecker, Chen Chen, Cheng Ouyang, Niccolò McConnell, Alina Miron, Yongmin Li, Alena Uus, Irina Grigorescu, Paula Ramirez Gilliland, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Haoyu Wang, Ziyan Huang, Jin Ye, Mireia Alenyà, Valentin Comte, Oscar Camara, Jean-Bap
Publié dans: IEEE Transactions on Medical Imaging, 2024, Page(s) 1-1, ISSN 0278-0062
Éditeur: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tmi.2024.3485554

Serverless Computing for Scientific Applications

Auteurs: M. Malawski, B. Balis
Publié dans: IEEE Internet Computing, Numéro ( Volume: 26, Numéro: 4, 01 July-Aug. 2022), 2022, ISSN 1089-7801
Éditeur: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mic.2022.3168810

COVID-19 Drug Repurposing: a Network-based Framework for Exploring BioMedical Literature and Clinical Trials for Possible Treatments

Auteurs: Ahmed Abdeen Hamed *, Tamer E. Fandy, Karolina L. Tkaczuk, Byung Suk Lee
Publié dans: Pharmaceutics, 2022, ISSN 1999-4923
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14030567

Relating Global and Local Connectome Changes to Dementia and Targeted Gene Expression in Alzheimer's Disease

Auteurs: Samar S. M. Elsheikh, Emile R. Chimusa, Alzheimer's Disease Neuroimaging Initiative, Nicola J. Mulder and Alessandro Crimi
Publié dans: Frontiers in Human Neuroscience, 2021, ISSN 1662-5161
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fnhum.2021.761424

CACTUS: A Comprehensive Abstraction and Classification Tool for Uncovering Structures

Auteurs: Luca Gherardini, Varun Ravi Varma, Karol Capała, Roger Woods, Jose Sousa
Publié dans: ACM Transactions on Intelligent Systems and Technology, Numéro 15, 2024, Page(s) 1-23, ISSN 2157-6904
Éditeur: Association for Computing Machinery (ACM)
DOI: 10.1145/3649459

Squeeziness for Non-Deterministic Systems

Auteurs: Alfredo Ibias, Manuel Núñez
Publié dans: Information and Software Technology, 2023, ISSN 0950-5849
Éditeur: Elsevier BV
DOI: 10.1016/j.infsof.2023.107173

Vascular phenotypes in early hypertension

Auteurs: Eleanor Murray, Christian Delles, Patryk Orzechowski, Pawel RENC, Arkadiusz SITEK, Joost Wagenaar, and Tomasz Guzik
Publié dans: Journal of Human Hypertension, 2022, ISSN 0950-9240
Éditeur: Nature Publishing Group
DOI: 10.1038/s41371-022-00794-7

Prediction of misfolded proteins spreading in Alzheimer’s disease using machine learning and spreading models

Auteurs: Luca Gherardini, Aleksandra Zajdel, Lorenzo Pini, Alessandro Crimi
Publié dans: Cerebral Cortex, Numéro 33, 2023, Page(s) 11471-11485, ISSN 1047-3211
Éditeur: Oxford University Press
DOI: 10.1093/cercor/bhad380

"""SATO (IDEAS expAnded wiTh BCIO): workflow for designers of patient-centered mobile health behaviourchange intervention applications"""

Auteurs: Aneta Lisowska, Szymon Wilk, Mor Peleg
Publié dans: Journal of Biomedical Informatics, 2023, ISSN 1532-0464
Éditeur: Academic Press
DOI: 10.1016/j.jbi.2022.104276

Current Trends in Software Engineering Bachelor Theses

Auteurs: Jacek Dajda, Michał Idzik, Jakub Sroka, Mikołaj Sikora Wiktor Pawłowski, Maciej Smo lka, Przemysław Jabłecki Filip Ślazyk, Maciej Malawski, Emilia Majerz Aleksandra Pasternak, Witold Dzwinel
Publié dans: Computing and Informatics, 2021, ISSN 1335-9150
Éditeur: Slovak Academic Press Ltd.
DOI: 10.31577/cai_2021_4_930

Ab initio protein structure prediction – the necessary presence of external force field as it is delivered by Hsp40 chaperone

Auteurs: Irena Roterman, K Stapor, L Konieczny
Publié dans: BMC Bioinformatics, Numéro 24, 418, 2023, ISSN 1471-2105
Éditeur: BioMed Central
DOI: 10.21203/rs.3.rs-3212848/v1

Connexins and Pannexins—Similarities and Differences According to the FOD-M Model

Auteurs: Irena Roterman, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny
Publié dans: Biomedicines, Numéro 10, 2024, Page(s) 1504, ISSN 2227-9059
Éditeur: MDPI
DOI: 10.3390/biomedicines10071504

Real-time placental vessel segmentation in fetoscopic laser surgery for Twin-to-Twin Transfusion Syndrome

Auteurs: Szymon Płotka, Tomasz Szczepański, Paula Szenejko, Przemysław Korzeniowski, Jesús Rodriguez Calvo, Asma Khalil, Alireza Shamshirsaz, Robert Brawura-Biskupski-Samaha, Ivana Išgum, Clara I. Sánchez, Arkadiusz Sitek
Publié dans: Medical Image Analysis, Numéro 99, 2025, Page(s) 103330, ISSN 1361-8415
Éditeur: Elsevier BV
DOI: 10.1016/j.media.2024.103330

Artificial Intelligence in PET: an Industry Perspective

Auteurs: Sitek, Arkadiusz; Ahn, Sangtae; Asma, Evren; Chandler, Adam; Ihsani, Alvin; Prevrhal, Sven; Rahmim, Arman; Saboury, Babak; Thielemans, Kris
Publié dans: PET Clinics, Numéro August 03, 2021, 2021, ISSN 1556-8598
Éditeur: Elsevier Saunders
DOI: 10.1016/j.cpet.2021.06.006

Dependence of Protein Structure on Environment: FOD Model Applied to Membrane Proteins

Auteurs: Irena Roterman, Katarzyna Stapor, Krzysztof Gądek, Tomasz Gubała , Piotr Nowakowski, Piotr Fabian and Leszek Konieczny
Publié dans: Membrane Biological Function in Health and Disease, Numéro Membranes 2022, 12(1), 50, 2021, ISSN 2077-0375
Éditeur: Molecular Diversity Preservation International
DOI: 10.3390/membranes12010050

Modelling The Hemodynamics of Coronary Ischemia

Auteurs: Baraikan, Abdulaziz Al, Krzysztof Czechowicz, Paul D. Morris, Ian Halliday, Rebecca C. Gosling, Julian P. Gunn, Andrew J. Narracott, Gareth Williams, Pankaj Garg, Maciej Malawski, and et al.
Publié dans: Fluids, 2023, ISSN 2311-5521
Éditeur: MDPI
DOI: 10.3390/fluids8050159

GraphTar: applying word2vec and graph neural networks to miRNA target prediction

Auteurs: Jan Przybyszewski, Maciej Malawski, Sabina Lichołai
Publié dans: BMC Bioinformatics, Numéro 24, 2023, ISSN 1471-2105
Éditeur: BioMed Central
DOI: 10.1186/s12859-023-05564-x

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge

Auteurs: Gabriel Girard, Jonathan Rafael-Patiño, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak et al.
Publié dans: NeuroImage, 2023, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2023.120231

MiR-191 as a Key Molecule in Aneurysmal Aortic Remodeling

Auteurs: Sabina Lichołai, Dorota Studzińska, Hanna Plutecka, Tomasz Gubała, Wojciech Szczeklik and Marek Sanak
Publié dans: Biomolecules, 2021, ISSN 2218-273X
Éditeur: MDPI
DOI: 10.3390/biom11111611

Toward the Observability of Cloud-Native Applications: The Overview of the State-of-the-Art

Auteurs: Joanna Kosinska, Bartosz Balis, Marek Konieczny, Maciej Malawski, Slawomir Zielinski
Publié dans: IEEE Access, 2023, ISSN 2169-3536
Éditeur: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2023.3281860

Improved myocardial blood flow estimation with residual activity correction and motion correction in 18F-flurpiridaz PET myocardial perfusion imaging

Auteurs: Yuka Otaki, Serge D. Van Kriekinge, Chih-Chun Wei, Paul Kavanagh, Ananya Singh, Tejas Parekh, Marcelo Di Carli, Jamshid Maddahi, Arkadiusz Sitek, Christopher Buckley, Daniel S. Berman & Piotr J. Slomka
Publié dans: European Journal of Nuclear Medicine and Molecular Imaging, 2021, ISSN 1619-7070
Éditeur: Springer Verlag
DOI: 10.1007/s00259-021-05643-2

Adaptation to space conditions of novel bacterial species isolated from the International Space Station revealed by functional gene annotations and comparative genome analysis

Auteurs: Lukasz M. Szydlowski, Alper A. Bulbul, Anna C. Simpson, Deniz E. Kaya, Nitin K. Singh, Ugur O. Sezerman, Paweł P. Łabaj, Tomasz Kosciolek, Kasthuri Venkateswaran
Publié dans: Microbiome, Numéro 12, 2025, Page(s) 190, ISSN 2049-2618
Éditeur: Springer Nature
DOI: 10.1186/s40168-024-01916-8

The Use of Digital Coronary Phantoms for the Validation of Arterial Geometry Reconstruction and Computation of Virtual FFR

Auteurs: Pederzani, Giulia, Krzysztof Czechowicz, Nada Ghorab, Paul D. Morris, Julian P. Gunn, Andrew J. Narracott, David Rodney Hose, and Ian Halliday
Publié dans: Fluids, 2023, ISSN 2311-5521
Éditeur: MDPI
DOI: 10.3390/fluids7060201

A Stochastic Model of Translocation of Knotted Proteins

Auteurs: Karol Capała, Piotr Szymczak
Publié dans: Physical Review E, 2022, ISSN 2470-0045
Éditeur: American Physical Society
DOI: 10.1103/physreve.106.054406

SaNDA: a Small and iNcomplete Dataset Analyser

Auteurs: Alfredo Ibias, Varun Ravi Varma, Karol Capała, Luca Gherardini, Jose Sousa
Publié dans: Information Sciences, 2023, ISSN 0020-0255
Éditeur: Elsevier BV
DOI: 10.1016/j.ins.2023.119078

O pewnym modelu zawijania białek

Auteurs: Marcin WIERZBIŃSKI, Karolina L. TKACZUK, Alessandro CRIMI
Publié dans: DeltAmi, 2023, ISSN 0137-3005
Éditeur: DeltAmi

Nuclear Medicine and Artificial Intelligence: Best Practices for Algorithm Development

Auteurs: Tyler J. Bradshaw, Ronald Boellaard, Joyita Dutta, Abhinav K. Jha, Paul Jacobs, Quanzheng Li, Chi Liu, Arkadiusz Sitek, Babak Saboury, Peter J.H. Scott, Piotr J. Slomka, John J. Sunderland, Richard L. Wahl, Fereshteh Yousefirizi, Sven Zuehlsdorff, Arman Rahmim and Irène Buvat
Publié dans: Journal of Nuclear Medicine, 2021, ISSN 0161-5505
Éditeur: Kexue Chubaneshe/Science Press
DOI: 10.2967/jnumed.121.262567

Macrophage Resistance to Ionizing Radiation Exposure Is Accompanied by Decreased Cathepsin D and Increased Transferrin Receptor 1 Expression

Auteurs: Ana Teresa Pinto, Ana Beatriz Machado, Hugo Osório, Marta Laranjeiro Pinto, Rui Vitorino, Gonçalo Justino, Cátia Santa, Flávia Castro, Tânia Cruz, Carla Rodrigues, Jorge Lima, José Luís R Sousa, Ana Patrícia Cardoso, Rita Figueira, Armanda Monteiro, Margarida Marques, Bruno Manadas, Jarne Pauwels, Kris Gevaert, Marc Mareel, Sónia Rocha, Tiago Duarte, Maria José Oliveira
Publié dans: Cancers, 2022, ISSN 2072-6694
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers15010270

Placental vessel segmentation and registration in fetoscopy: Literature review and MICCAI FetReg2021 challenge findings

Auteurs: Sophia Bano, Alessandro Casella, Francisco Vasconcelos, Abdul Qayyum, Abdesslam Benzinou, Moona Mazher, Fabrice Meriaudeau, Chiara Lena, Ilaria Anita Cintorrino, Gaia Romana De Paolis, Jessica Biagioli, Daria Grechishnikova, Jing Jiao, Bizhe Bai, Yanyan Qiao, Binod Bhattarai, Rebati Raman Gaire, Ronast Subedi, Eduard Vazquez, Szymon Płotka, Aneta Lisowska, Arkadiusz Sitek, George Attilakos, Ruwan
Publié dans: Medical Image Analysis, Numéro 92, 2024, Page(s) 103066, ISSN 1361-8415
Éditeur: Elsevier BV
DOI: 10.1016/j.media.2023.103066

Comparing structure–function relationships in brain networks using EEG and fNIRS

Auteurs: Rosmary Blanco, Maria Giulia Preti, Cemal Koba, Dimitri Van De Ville, Alessandro Crimi
Publié dans: Scientific Reports, Numéro 14, 2024, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-024-79817-x

Justifying Short-Term Load Forecasts Obtained with the Use of Neural Models

Auteurs: Tadeusz A. Grzeszczyk 1,Michal K. Grzeszczyk
Publié dans: Energies, Numéro 2022, 15(5), 2022, ISSN 1996-1073
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/en15051852

Synergistic eigenanalysis of covariance and Hessian matrices for enhanced binary classification

Auteurs: Agus Hartoyo, Jan Argasiński, Aleksandra Trenk, Kinga Przybylska, Anna Błasiak, Alessandro Crimi
Publié dans: Computers in Biology and Medicine, 2025, ISSN 1879-0534
Éditeur: Elsevier
DOI: 10.48550/arxiv.2402.09281

On the Dependence of Prion and Amyloid Structure on the Folding Environment

Auteurs: Irena Roterman, Katarzyna Stapor, Krzysztof Gądek, Tomasz Gubała , Piotr Nowakowski, Piotr Fabian and Leszek Konieczny
Publié dans: International Journal of Molecule Sciences, Numéro Int. J. Mol. Sci. 2021, 22(24), 13494;, 2021, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms222413494

Effects of data transformation and model selection on feature importance in microbiome classification data

Auteurs: Zuzanna Karwowska, Oliver Aasmets, null null, Mait Metspalu, Andres Metspalu, Lili Milani, Tõnu Esko, Tomasz Kosciolek, Elin Org
Publié dans: Microbiome, Numéro 13, 2025, ISSN 2049-2618
Éditeur: Springer Nature
DOI: 10.1186/s40168-024-01996-6

AI & COVID-19

Auteurs: Davide Bacciu, Emanuela Girardi, Marco Maratea and Jose Sousa
Publié dans: Intelligenza Artificiale, 2022, ISSN 1724-8035
Éditeur: IOS Press BV
DOI: 10.3233/ia-210121

Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome

Auteurs: Stefanie Duller, Simone Vrbancic, Łukasz Szydłowski, Alexander Mahnert, Marcus Blohs, Michael Predl, Christina Kumpitsch, Verena Zrim, Christoph Högenauer, Tomasz Kosciolek, Ruth A. Schmitz, Anna Eberhard, Melanie Dragovan, Laura Schmidberger, Tamara Zurabischvili, Viktoria Weinberger, Adrian Mathias Moser, Dagmar Kolb, Dominique Pernitsch, Rokhsareh Mohammadzadeh, Torben Kühnast, Thomas Ratte
Publié dans: Nature Communications, Numéro 15, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-024-52037-7

Comprehensive Analysis of Circular RNAs in Endothelial Cells

Auteurs: Lichołai, S.; Studzińska, D.; Plutecka, H.; Gubała, T.; Sanak, M.
Publié dans: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms241210025

Optimization of escape kinetics by reflecting and resetting

Auteurs: Karol Capała, Bartłomiej Dybiec
Publié dans: Chaos: An Interdisciplinary Journal of Nonlinear Science, Numéro 33, 2023, ISSN 1054-1500
Éditeur: American Institute of Physics
DOI: 10.1063/5.0159475

Deep learning fetal ultrasound video model match human observers in biometric measurements

Auteurs: Szymon Płotka, Adam Klasa, Aneta Lisowska, Joanna Seliga-Siwecka, Michał Lipa, Tomasz Trzciński and Arkadiusz Sitek
Publié dans: Physics in Medicine & Biology, 2022, ISSN 1361-6560
Éditeur: Published on behalf of Institute of Physics and Engineering in Medicine by IOP Publishing Ltd
DOI: 10.1088/1361-6560/ac4d85

Artificial intelligence for dementia—Applied models and digital health

Auteurs: Donald M. Lyall, Andrey Kormilitzin, Claire Lancaster, Jose Sousa, Fanny Petermann-Rocha, Christopher Buckley, Eric L. Harshfield, Matthew H. Iveson, Christopher R. Madan, Ríona McArdle, Danielle Newby, Vasiliki Orgeta, Eugene Tang, Stefano Tamburin, Lokendra S. Thakur, Ilianna Lourida, The Deep Dementia Phenotyping (DEMON) Network, David J. Llewellyn, Janice M. Ranson
Publié dans: Alzheimer's & Dementia: Journal of the Alzheimer's Association, 2023, ISSN 1552-5260
Éditeur: Elsevier BV
DOI: 10.1002/alz.13391

Finite element analysis informed variable selection for femoral fracture risk prediction.

Auteurs: Mark Taylor; Marco Viceconti; Pinaki Bhattacharya; Xinshan Li
Publié dans: Journal of the Mechanical Behavior of Biomedical Materials, Numéro 3, 2021, ISSN 1751-6161
Éditeur: Elsevier BV
DOI: 10.1016/j.jmbbm.2021.104434

COVID-19 Symptoms App Analysis to Foresee Healthcare Impacts: Evidence from Northern Ireland

Auteurs: José Sousa, JoãoBarata, Hugo C van Woerdend, Frank Kee
Publié dans: Applied Soft Computing, 2022, ISSN 1568-4946
Éditeur: Elsevier BV
DOI: 10.1016/j.asoc.2021.108324

Multifunctional, Fluorene‐Based Modulator of Cholinergic and GABAergic Neurotransmission as a Novel Drug Candidate for Palliative Treatment of Alzheimer's Disease

Auteurs: Dawid Panek, Anna Pasieka, Jakub Jończyk, Milena Gawlińska, Paula Zaręba, Agata Siwek, Małgorzata Wolak, Barbara Mordyl, Monika Głuch‐Lutwin, Gniewomir Latacz, Xavier Brazzolotto, Fabien Chantegreil, Florian Nachon, Jana Zdarova Karasova, Jaroslav Pejchal, Martin Mzik, Vit Sestak, Lukas Prchal, Jitka Odvarkova, Ondrej Soukup, Jan Korabecny, Ales Sorf, Marie Hamsikova, Lucie Zemanova, Lubica
Publié dans: Angewandte Chemie International Edition, Numéro 64, 2025, ISSN 1433-7851
Éditeur: John Wiley & Sons Ltd.
DOI: 10.1002/anie.202420510

Segmenting the Inferior Alveolar Canal in CBCTs Volumes: the ToothFairy Challenge

Auteurs: Federico Bolelli, Luca Lumetti, Shankeeth Vinayahalingam, Mattia Di Bartolomeo, Arrigo Pellacani, Kevin Marchesini, Niels Van Nistelrooij, Pieter Van Lierop, Tong Xi, Yusheng Liu, Rui Xin, Tao Yang, Lisheng Wang, Haoshen Wang, Chenfan Xu, Zhiming Cui, Marek Wodzinski, Henning Müller, Yannick Kirchhoff, Maximilian R. Rokuss, Klaus Maier-Hein, Jaehwan Han, Wan Kim, Hong-Gi Ahn, Tomasz Szczepański,
Publié dans: IEEE Transactions on Medical Imaging, 2025, Page(s) 1-1, ISSN 0278-0062
Éditeur: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tmi.2024.3523096

Stratifying risk of disease in haematuria patients using machine learning techniques to improve diagnostics

Auteurs: Anna Drożdż, Brian Duggan, Mark W. Ruddock, Cherith N. Reid, Mary Jo Kurth, Joanne Watt, Allister Irvine, John Lamont, Peter Fitzgerald, Declan O’Rourke, David Curry, Mark Evans, Ruth Boyd, Jose Sousa
Publié dans: Frontiers in Oncology, Numéro 14, 2024, ISSN 2234-943X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fonc.2024.1401071

Transcriptomic profiling of “brain-eating amoeba” Naegleria fowleri infection in mice: the host and the protozoa perspectives

Auteurs: Vincent Guerlais, Nina Allouch, E. Ashley Moseman, Alicja W. Wojciechowska, Jakub W. Wojciechowski, Isabel Marcelino
Publié dans: Frontiers in Cellular and Infection Microbiology, Numéro 14, 2024, ISSN 2235-2988
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fcimb.2024.1490280

Sensitivity analysis of closed-loop one-chamber and four-chamber models with baroreflex

Auteurs: Karolina Tlałka, Harry Saxton, Ian Halliday, Xu Xu, Andrew Narracott, Daniel Taylor, Maciej Malawski
Publié dans: PLOS Computational Biology, Numéro 20, 2025, Page(s) e1012377, ISSN 1553-7358
Éditeur: PLOS
DOI: 10.1371/journal.pcbi.1012377

Personalised 3D assessment of trochanteric soft tissues improves HIP fracture classification accuracy

Auteurs: Aldieri, Alessandra; Terzini, Mara; Audenino, Alberto; Bignardi, Cristina; Paggiosi, Margaret; Eastell, Richard; Viceconti, Marco; Bhattacharya, Pinaki
Publié dans: Crossref, Numéro 2, 2022, ISSN 0090-6964
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10439-022-02924-1

Community Detection in Brain Connectome using Quantum Annealer Devices

Auteurs: M.Wierzbinski, J.Falco-Roget, A.Crimi
Publié dans: Scientific Reports, 2023, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-023-30579-y

Decentralized approaches for Autonomous Vehicles Coordination

Auteurs: L. Gherardini, G. Cabri, M. Montangero
Publié dans: Internet Technology Letters, 2022, ISSN 2476-1508
Éditeur: John Wiley & Sons, Ltd.
DOI: 10.1002/itl2.398

Refining antimicrobial photodynamic therapy: effect of charge distribution and central metal ion in fluorinated porphyrins on effective control of planktonic and biofilm bacterial forms

Auteurs: Barbara Pucelik, Agata Barzowska, Adam Sułek, Mateusz Werłos, Janusz M. Dąbrowski
Publié dans: Photochemical & Photobiological Sciences, Numéro 23, 2024, Page(s) 539-560, ISSN 1474-905X
Éditeur: Royal Society of Chemistry
DOI: 10.1007/s43630-024-00538-1

Virtual Screening Approaches to Identify Promising Multitarget-Directed Ligands for the Treatment of Autism Spectrum Disorder

Auteurs: Jakub Jończyk, Klaudia Przybylska, Marek Staszewski, Justyna Godyń, Tobias Werner, Monika Stefaniak-Napieralska, Holger Stark, Krzysztof Walczyński, Marek Bajda
Publié dans: Molecules, Numéro 29, 2025, Page(s) 5271, ISSN 1420-3049
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules29225271

Mining Literature-Based Knowledge Graph for Predicting Combination Therapeutics: A COVID-19 Use Case

Auteurs: Ahmed Abdeen Hamed; Jakub Jonczyk; Mohammad Zaiyan Alam; Ewa Deelman; Byung Suk Lee
Publié dans: 2023
Éditeur: IEEE Xplore
DOI: 10.1109/ickg55886.2022.00018

FetalNet: Multi-Task Deep Learning Framework for Fetal Ultrasound Biometric Measurements

Auteurs: Płotka, Szymon & Wlodarczyk, Tomasz & Klasa, Adam & Lipa, Michal & Sitek, Arkadiusz & Trzcinski, Tomasz
Publié dans: 2021
Éditeur: Springer, Cham

Subgrouping and personalized risk evaluation for outcome prediction in ANCA associated vasculitis (AAV)

Auteurs: K. Wójcik, A. Ćmiel, T. Satława, S. Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanows
Publié dans: Proceedings of the 20th International Vasculitis and ANCA workshop 3-6th April 2022, 2022
Éditeur: VASCULITIS2022
DOI: 10.5281/zenodo.6381940

Estimation of the Impact of COVID-19 Pandemic Lockdowns on Breast Cancer Deaths and Costs in Poland using Markovian Monte Carlo Simulation

Auteurs: Magdalena Dul, Michal K. Grzeszczyk, Ewelina Nojszewska, Arkadiusz Sitek
Publié dans: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023, ISBN 978-3-031-36023-7
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-36024-4_10

PERSONALIZED RISK EVALUATION FOR OUTCOME PREDICTION IN ANCA ASSOCIATED VASCULITIS (AAV) USING LATENT CLASS ANALYSIS AND MACHINE LEARNING.

Auteurs: K. Wójcik, A. Ćmiel, T. Satława, S. Lichołai, K. Wawrzycka-Adamczyk, G. Biedroń, A. Masiak, Z. Zdrojewski, H. Storoniak, B. Bułło-Piontecka, A. Dębska-Ślizień, R. Jeleniewicz, M. Majdan, K. Jakuszko, H. Augustyniak-Bartosik, M. Krajewska, I. Brzosko, M. Brzosko, J. Kur-Zalewska, W. Tłustochowicz, M. Madej, A. Hawrot-Kawecka, E. Kucharz, P. Głuszko, M. Wisłowska, J. Miłkowska-Dymanows
Publié dans: Annals of the Rheumatic Diseases 2022;81:367., 2022
Éditeur: BMJ
DOI: 10.1136/annrheumdis-2022-eular.1089

Optimizing Star Aligner for High Throughput Computing in the Cloud

Auteurs: Piotr Kica, Sabina Lichołai, Michał Orzechowski, Maciej Malawski
Publié dans: 2024 IEEE International Conference on Cluster Computing Workshops (CLUSTER Workshops), 2024, Page(s) 162-163
Éditeur: IEEE
DOI: 10.1109/clusterworkshops61563.2024.00039

Resting State Brain Connectivity Analysis from EEG and FNIRS Signals

Auteurs: R.Blanco, C. Koba, A. Crimi
Publié dans: Computational Science – ICCS 2023. ICCS 2023. Lecture Notes in Computer Science, 2023
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-36021-3_58

Using Unused: Non-Invasive Dynamic FaaS Infrastructure with HPC-Whisk.

Auteurs: Bartłomiej Przybylski, Maciej Pawlik, Paweł Żuk, Bartłomiej Łagosz, Maciej Malawski, Krzysztof Rzadca
Publié dans: SC '22: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis, 2022
Éditeur: IEEE Press
DOI: 10.5555/3571885.3571938

Virtual Reality Simulator for Fetoscopic Spina Bifida Repair Surgery

Auteurs: Przemysław Korzeniowski; Szymon Płotka; Robert Brawura-Biskupski-Samaha; Arkadiusz Sitek et al.
Publié dans: 2022 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2022
Éditeur: IEEE
DOI: 10.1109/iros47612.2022.9981920

Can gamification reduce the burden of self-reporting in mHealth applications? A feasibility study using machine learning from smartwatch data to estimate cognitive load.

Auteurs: Michal K Grzeszczyk, Paulina Adamczyk, Sylwia Marek, Ryszard Pręcikowski, Maciej Kuś, M Patrycja Lelujko, Rosmary Blanco, Tomasz Trzciński, Arkadiusz Sitek, Maciej Malawski, Aneta Lisowska
Publié dans: AMIA Annu Symp Proc. 2024 Jan 11;2023:., 2023, Page(s) 389–396
Éditeur: AMIA
DOI: 10.48550/arxiv.2302.03616

Automated glioma multiclass tumor classification

Auteurs: Monika Pytlarz, Kamil Wojnicki, Paulina Pilanc, Bożena Kamińska, Alessandro Crimi
Publié dans: Medical Imaging 2023: Digital and Computational Pathology, 2023, ISBN 9782151066047
Éditeur: SPIE
DOI: 10.1117/12.2654034

CXR-FL: Deep Learning-Based Chest X-ray Image Analysis Using Federated Learning

Auteurs: Ślazyk F, Jabłecki P, Malawski M, Płotka P., A. Lisowska
Publié dans: Computational Science – ICCS 2022, Numéro 22nd International Conference, London, UK, June 21–23, 2022, Proceedings, Part II, 2022, ISBN 978-3-031-08753-0
Éditeur: Springer Cham
DOI: 10.1007/978-3-031-08754-7_50

POTHER: Patch-Voted Deep Learning-based Chest X-ray Bias Analysis for COVID-19 Detection

Auteurs: Szczepański T, Sitek A, Trzciński T, Płotka S
Publié dans: Computational Science – ICCS 2022. ICCS 2022. Lecture Notes in Computer Science, Numéro vol 13351, 2022, ISBN 978-3-031-08753-0
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-08754-7_51

BabyNet: Residual Transformer Module for Birth Weight Prediction on Fetal Ultrasound Video

Auteurs: Płotka S, Grzeszczyk MK, Lipa M, Trzciński T, and Sitek A.
Publié dans: Medical Image Computing and Computer Assisted Intervention – MICCAI 2022. MICCAI 2022. Lecture Notes in Computer Science, 2022, ISBN 978-3-031-16439-2
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-16440-8_34

Serverless Approach to Sensitivity Analysis of Computational Models

Auteurs: Piotr Kica, Magdalena Otta, Krzysztof Czechowicz, Karol Zając, Piotr Nowakowski, Andrew Narracott, Ian Halliday, Maciej Malawski
Publié dans: 2023 IEEE/ACM 23rd International Symposium on Cluster, Cloud and Internet Computing (CCGrid), 2023
Éditeur: IEEE
DOI: 10.1109/ccgrid57682.2023.00064

SimuScope: Realistic Endoscopic Synthetic Dataset Generation through Surgical Simulation and Diffusion Models

Auteurs: Sabina Martyniak, Joanna Kaleta, Diego Dall'Alba, Michał Naskręt, Szymon Płotka, Przemysław Korzeniowski
Publié dans: IEEE/CVF Winter Conference on Applications of Computer Vision, 2024
Éditeur: IEEE
DOI: 10.48550/arxiv.2412.02332

Leveraging ACC Resources for Medical Research

Auteurs: Piotr Nowakowski, Marian Bubak, Krzysztof Gądek, Marek Kasztelnik, Maciej Malawski, Jan Meizner, Adam Nowak, Piotr Połeć, Karol Zając, Taras Zhyhulin
Publié dans: 2023
Éditeur: Academic Computer Centre Cyfronet AGH

Multi-task Swin Transformer for Motion Artifacts Classification and Cardiac Magnetic Resonance Image Segmentation

Auteurs: Michal K. Grzeszczyk, Szymon Płotka, Arkadiusz Sitek
Publié dans: Statistical Atlases and Computational Modelling of the Heart Workshop (MICCAI 2022), 2022
Éditeur: Springer NAture
DOI: 10.48550/arxiv.2209.02470

Explainable Graph Neural Networks for EEG Classification and Seizure Detection in Epileptic Patients

Auteurs: Szymon Mazurek, Rosmary Blanco, Joan Falcó-Roget, Alessandro Crimi
Publié dans: 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024, Page(s) 1-5
Éditeur: IEEE
DOI: 10.1109/isbi56570.2024.10635821

Sensitivity analysis of a model of lower limb haemodynamics

Auteurs: Otta M., Halliday I., Tsui J., Lim C., Struzik Z., Narracott A.
Publié dans: Computational Science – ICCS 2022, 2022, ISBN 978-3-031-08756-1
Éditeur: Springer Cham
DOI: 10.1007/978-3-031-08757-8_7

D-MiSo: Editing Dynamic 3D Scenes using Multi-Gaussians Soup

Auteurs: Joanna Waczyńska, Piotr Borycki, Joanna Kaleta, Sławomir Tadeja, Przemysław Spurek
Publié dans: Conference on Neural Information Processing Systems 2024, 2024
Éditeur: NeurIPS
DOI: 10.48550/arxiv.2405.14276

TabMixer: Noninvasive Estimation of the Mean Pulmonary Artery Pressure via Imaging and Tabular Data Mixing

Auteurs: Michal K. Grzeszczyk, Przemysław Korzeniowski, Samer Alabed, Andrew J. Swift, Tomasz Trzciński, Arkadiusz Sitek
Publié dans: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024, 2024, Page(s) 670-680
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72086-4_63

TabAttention: Learning Attention Conditionally on Tabular Data

Auteurs: Michal K. Grzeszczyk, Szymon Płotka, Beata Rebizant, Katarzyna Kosińska-Kaczyńska, Michał Lipa, Robert Brawura-Biskupski-Samaha, Przemysław Korzeniowski, Tomasz Trzciński, Arkadiusz Sitek
Publié dans: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023, 2024, Page(s) 347-357
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-43990-2_33

3D Reconstructions of Brain from MRI Scans Using Neural Radiance Fields

Auteurs: Khadija Iddrisu, Sylwia Malec, Alessandro Crimi
Publié dans: Lecture Notes in Computer Science, Artificial Intelligence and Soft Computing, 2023, Page(s) 207-218
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-42508-0_19

EsmTemp - Transfer Learning Approach for Predicting Protein Thermostability

Auteurs: Adam Sułek, Jakub Jończyk, Patryk Orzechowski, Ahmed Abdeen Hamed, Marek Wodziński
Publié dans: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Page(s) 187-194
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63759-9_23

Local Sensitivity Analysis of a Closed-Loop in Silico Model of the Human Baroregulation

Auteurs: Karolina Tlałka, Harry Saxton, Ian Halliday, Xu Xu, Daniel Taylor, Andrew Narracott, Maciej Malawski
Publié dans: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Page(s) 173-187
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63772-8_17

Bayesian Filtered Generation of Post-surgical Brain Connectomes on Tumor Patients

Auteurs: J. Falco-Roget, A.Crimi
Publié dans: Imaging Systems for GI Endoscopy, and Graphs in Biomedical Image Analysis. ISGIE GRAIL 2022 2022. Lecture Notes in Computer Science, 2022
Éditeur: Springer, Cham
DOI: 10.1007/978-3-031-21083-9_8

Auteurs: Jakub Klimczak, Ahmed Abdeen Hamed
Publié dans: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Page(s) 257-265
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63775-9_18

Investigation of Energy-Efficient AI Model Architectures and Compression Techniques for “Green” Fetal Brain Segmentation

Auteurs: Szymon Mazurek, Monika Pytlarz, Sylwia Malec, Alessandro Crimi
Publié dans: Lecture Notes in Computer Science, Computational Science – ICCS 2024, 2024, Page(s) 61-74
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-63772-8_5

Let Me DeCode You: Decoder Conditioning with Tabular Data

Auteurs: Tomasz Szczepański, Michal K. Grzeszczyk, Szymon Płotka, Arleta Adamowicz, Piotr Fudalej, Przemysław Korzeniowski, Tomasz Trzciński, Arkadiusz Sitek
Publié dans: Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024, 2024, Page(s) 228-238
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72384-1_22

MISS: Multiclass Interpretable Scoring Systems

Auteurs: Michal K. Grzeszczyk, Tomasz Trzciński, Arkadiusz Sitek
Publié dans: Proceedings of the 2024 SIAM International Conference on Data Mining (SDM), 2024, Page(s) 55-63
Éditeur: Society for Industrial and Applied Mathematics
DOI: 10.1137/1.9781611978032.7

Modularity promotes excitation-inhibition balance in synaptically coupled neuronal networks

Auteurs: Janaki Raghavan, Zbigniew R. Struzik and Sitabhra Sinha
Publié dans: ICCS London 2022, 2022
Éditeur: ICCS

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