Deliverables
Procedures and protocols for establishment of organoid cultures from rare histologies
Procedures and protocols for establishment of organoid cultures from rare histologies in conjunction with WP1
List of metastasis associated genes in GEPOsReport on a modification of the consensus classifier for use on organoids and knowledge on the corresponding tumour cell biology
Report on functional characterisation of selected stromal and cancer cell-specific genes
Report on genome-scale CIRSPR/Cas9 essentiality screening of 25 cancers to discover vulnerabilities and integration of genomic data
Design of the microfluidics for combinatorial dispensing
Publication of at least 15 high quality manuscripts in scientific journals
Report on publication of at least 15 high quality manuscripts in scientific journals
Report on a rational strategy for combinatorial therapy based on PaCa organoid co-culturesReport on a metabolomics signature for drug screening
Report on the role of single genes in EMT of PaCa
PRECODE website set-up and running
PRECODE website setup and running
Report on 2nd series of activities – Hands-on training – ESR project reportsReport on 2nd series of activities Handson training ESR project reports
Report on 1st series of activities - Teambuilding - Hands-on trainingReport on 1st series of activities Teambuilding Handson training
Adoption of a exploitation strategyAdoption of IP policy
Adoption of IP policy as part of the CA
Distribution of news on internet channelsDistribution of news on internet channels News will be continually distributed through the diverse internet channels at least until month 48
Report on 3rd series of activities - ESR transferable skills – IPR – midterm review on ESR projects
Report on 3rd series of activities ESR transferable skills IPR midterm review on ESR projects
Report on 6th series of activities - Review of ESRs success in the job marketReport on 5th series of activities - Final review of ESR progress - career fair
Publications
Author(s):
Parniyan Maneshi, James Mason, Mitesh Dongre, Daniel Öhlund
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.787485
Author(s):
Paul Manoukian, Maarten Bijlsma, Hanneke van Laarhoven
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.743907
Author(s):
Shruthi Narayanan, Silve Vicent, Mariano Ponz-Sarvisé
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.787249
Author(s):
Peter Bailey, Rachel A. Ridgway, Patrizia Cammareri, Mairi Treanor-Taylor, Ulla-Maja Bailey, Christina Schoenherr, Max Bone, Daniel Schreyer, Karin Purdie, Jason Thomson, William Rickaby, Rene Jackstadt, Andrew D. Campbell, Emmanouil Dimonitsas, Alexander J. Stratigos, Sarah T. Arron, Jun Wang, Karen Blyth, Charlotte M. Proby, Catherine A. Harwood, Owen J. Sansom, Irene M. Leigh, Gareth J. Inman
Published in:
Nature Communications, Issue 14, 2023, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-023-40822-9
Author(s):
Hai Yang, Bin Liu, Dongxue Liu, Zhirong Yang, Shuman Zhang, Pengyan Xu, Yuming Xing, Isabella Kutschick, Susanne Pfeffer, Nathalie Britzen-Laurent, Robert Grützmann, Christian Pilarsky
Published in:
Cancers, Issue 14, 2023, Page(s) 3152, ISSN 2072-6694
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/cancers14133152
Author(s):
Shannon R. Nelson, Chenxi Zhang, Sandra Roche, Fiona O’Neill, Niall Swan, Yonglun Luo, AnneMarie Larkin, John Crown, Naomi Walsh
Published in:
Scientific Reports, Issue 10, 2022, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/s41598-020-59368-7
Author(s):
Shuman Zhang, Duo Yun, Hao Yang, Markus Eckstein, Gihan Daw Elbait, Yaxing Zhou, Yanxi Lu, Hai Yang, Jinping Zhang, Isabella Dörflein, Nathalie Britzen-Laurent, Susanne Pfeffer, Marc P. Stemmler, Andreas Dahl, Debabrata Mukhopadhyay, David Chang, Hang He, Siyuan Zeng, Bin Lan, Benjamin Frey, Chuanpit Hampel, Eva Lentsch, Paradesi Naidu Gollavilli, Christian Büttner, Arif B. Ekici, Andrew Biankin
Published in:
Cell Death Discovery, Issue 10, 2024, ISSN 2058-7716
Publisher:
SpringerNature
DOI:
10.1038/s41420-024-01890-y
Author(s):
Maria Miquel, Shuman Zhang, Christian Pilarsky
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.748631
Author(s):
Joscha Griger, Sebastian A. Widholz, Moritz Jesinghaus, Niklas de Andrade Krätzig, Sebastian Lange, Thomas Engleitner, Juan José Montero, Ekaterina Zhigalova, Rupert Öllinger, Veveeyan Suresh, Wiebke Winkler, Svenja Lier, Olga Baranov, Riccardo Trozzo, Najib Ben Khaled, Shounak Chakraborty, Jiakun Yu, Björn Konukiewitz, Katja Steiger, Nicole Pfarr, Ashish Rajput, David Sailer, Gisela Keller, P
Published in:
Cancer Cell, Issue 41, 2024, Page(s) 1327-1344.e10, ISSN 1535-6108
Publisher:
Cell Press
DOI:
10.1016/j.ccell.2023.06.001
Author(s):
Maarten F. Bijlsma, Peter J. Bailey, Marc P. Stemmler
Published in:
Frontiers in Cell and Developmental Biology, Issue 10, 2022, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2022.875836
Author(s):
Mónica P de Andrés, Richard J Jackson, Irene Felipe, Sladjana Zagorac, Christian Pilarsky, Anna Melissa Schlitter, Jaime Martinez de Villareal, Gun Ho Jang, Eithne Costello, Steve Gallinger, Paula Ghaneh, William Greenhalf, Thomas Knösel, Daniel H Palmer, Petra Ruemmele, Wilko Weichert, Markus Buechler, Thilo Hackert, John P Neoptolemos, Faiyaz Notta, Núria Malats, Paola Martinelli, Francisco
Published in:
Gut, Issue 72, 2023, Page(s) 535-548, ISSN 0017-5749
Publisher:
BMJ Publishing Group
DOI:
10.1136/gutjnl-2021-325803
Author(s):
Sabrina D’Agosto, Francesco Pezzini, Lisa Veghini, Pietro Delfino, Claudia Fiorini, Gael D. Temgue Tane, Anais Del Curatolo, Caterina Vicentini, Giorgia Ferrari, Davide Pasini, Silvia Andreani, Francesca Lupo, Elena Fiorini, Giulia Lorenzon, Rita T. Lawlor, Borislav Rusev, Antonia Malinova, Claudio Luchini, Michele Milella, Elisabetta Sereni, Antonio Pea, Claudio Bassi, Peter Bailey, Aldo Scarpa
Published in:
Oncogene, Issue 41, 2022, Page(s) 4371-4384, ISSN 0950-9232
Publisher:
Nature Publishing Group
DOI:
10.1038/s41388-022-02432-5
Author(s):
Francesca Lupo, Francesco Pezzini, Davide Pasini, Elena Fiorini, Annalisa Adamo, Lisa Veghini, Michele Bevere, Cristina Frusteri, Pietro Delfino, Sabrina D'agosto, Silvia Andreani, Geny Piro, Antonia Malinova, Tian Wang, Francesco De Sanctis, Rita Teresa Lawlor, Chang-il Hwang, Carmine Carbone, Ivano Amelio, Peter Bailey, Vincenzo Bronte, David Tuveson, Aldo Scarpa, Stefano Ugel, Vincenzo Corbo
Published in:
Gut, Issue 73, 2024, Page(s) 1321-1335, ISSN 0017-5749
Publisher:
BMJ Publishing Group
DOI:
10.1136/gutjnl-2023-329807
Author(s):
Laura Ann Hetzel, Ahmed Ali, Vincenzo Corbo, Thomas Hankemeier
Published in:
International Journal of Molecular Sciences, Issue 24, 2023, Page(s) 10882, ISSN 1422-0067
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/ijms241310882
Author(s):
Daniel Schreyer, John P. Neoptolemos, Simon T. Barry, Peter Bailey
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2022, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.795735
Author(s):
Xinyuan Liu, Beate Gündel, Xidan Li, Jianping Liu, Anthony Wright, Matthias Löhr, Gustav Arvidsson, Rainer Heuchel
Published in:
Translational Oncology, Issue 14, 2021, Page(s) 101107, ISSN 1936-5233
Publisher:
Neoplasia Press
DOI:
10.1016/j.tranon.2021.101107
Author(s):
Juan J. Montero, Riccardo Trozzo, Maya Sugden, Rupert Öllinger, Alexander Belka, Ekaterina Zhigalova, Paul Waetzig, Thomas Engleitner, Marc Schmidt-Supprian, Dieter Saur, Roland Rad
Published in:
Nature Methods, Issue 21, 2024, Page(s) 584-596, ISSN 1548-7091
Publisher:
Nature Publishing Group
DOI:
10.1038/s41592-024-02190-0
Author(s):
Bhavana Gupta, Adam C. Errington, Ana Jimenez-Pascual, Vasileios Eftychidis, Simone Brabletz, Marc P. Stemmler, Thomas Brabletz, David Petrik, Florian A. Siebzehnrubl
Published in:
Cell Reports, Issue 36, 2022, Page(s) 109588, ISSN 2211-1247
Publisher:
Cell Press
DOI:
10.1016/j.celrep.2021.109588
Author(s):
Ruthger van Roey, Thomas Brabletz, Marc P. Stemmler, Isabell Armstark
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.753456
Author(s):
Michele Simbolo, Nicola Silvestris, Giuseppe Malleo, Andrea Mafficini, Laura Maggino, Alessandra Cocomazzi, Lisa Veghini, Aldo Mombello, Francesco Pezzini, Elisabetta Sereni, Filippo M. Martelli, Anastasios Gkountakos, Chiara Ciaparrone, Maria L. Piredda, Giuseppe Ingravallo, Gaetano Paolino, Floriana Nappo, Ilario G. Rapposelli, Luca Frassinetti, Luca Saragoni, Sara Lonardi, Antonio Pea, Salvator
Published in:
Modern Pathology, Issue 36, 2024, Page(s) 100251, ISSN 0893-3952
Publisher:
Nature Publishing Group
DOI:
10.1016/j.modpat.2023.100251
Author(s):
Beatrice Parma, Vignesh Ramesh, Paradesi Naidu Gollavilli, Aarif Siddiqui, Luisa Pinna, Annemarie Schwab, Sabine Marschall, Shuman Zhang, Christian Pilarsky, Francesca Napoli, Marco Volante, Sophia Urbanczyk, Dirk Mielenz, Henrik Daa Schrøder, Marc Stemmler, Heiko Wurdak, Paolo Ceppi
Published in:
Journal of Experimental & Clinical Cancer Research, Issue 40, 2022, ISSN 1756-9966
Publisher:
SpingerNature
DOI:
10.1186/s13046-021-02049-8
Author(s):
Andrea Vallés-Martí, Giulia Mantini, Paul Manoukian, Cynthia Waasdorp, Arantza Fariña Sarasqueta, Richard R. de Goeij-de Haas, Alex A. Henneman, Sander R. Piersma, Thang V. Pham, Jaco C. Knol, Elisa Giovannetti, Maarten F. Bijlsma, Connie R. Jiménez
Published in:
Cell Reports, Issue 42, 2024, Page(s) 112581, ISSN 2211-1247
Publisher:
Cell Press
DOI:
10.1016/j.celrep.2023.112581
Author(s):
Oihane Erice, Shruthi Narayanan, Iker Feliu, Rodrigo Entrialgo-Cadierno, Antonia Malinova, Caterina Vicentini, Elizabeth Guruceaga, Pietro Delfino, Marija Trajkovic-Arsic, Haritz Moreno, Karmele Valencia, Ester Blanco, Irati Macaya, Daniel Öhlund, Purvesh Khatri, Fernando Lecanda, Aldo Scarpa, Jens T. Siveke, Vincenzo Corbo, Mariano Ponz-Sarvise, Silve Vicent
Published in:
Clinical Cancer Research, Issue 29, 2023, Page(s) 1137-1154, ISSN 1078-0432
Publisher:
American Association for Cancer Research
DOI:
10.1158/1078-0432.ccr-22-0794
Author(s):
Marlene Geyer, Daniel Schreyer, Lisa-Marie Gaul, Susanne Pfeffer, Christian Pilarsky, Karla Queiroz
Published in:
Cell Death Discovery, Issue 9, 2023, ISSN 2058-7716
Publisher:
SpringerNature
DOI:
10.1038/s41420-023-01334-z
Author(s):
Peter Bailey, Xu Zhou, Jingyu An, Teresa Peccerella, Kai Hu, Christoph Springfeld, Markus Büchler, John P Neoptolemos
Published in:
Function, Issue 4, 2023, ISSN 2633-8823
Publisher:
american physiological society
DOI:
10.1093/function/zqad011
Author(s):
Markus Breunig, Jessica Merkle, Martin Wagner, Michael K. Melzer, Thomas F.E. Barth, Thomas Engleitner, Johannes Krumm, Sandra Wiedenmann, Christian M. Cohrs, Lukas Perkhofer, Gaurav Jain, Jana Krüger, Patrick C. Hermann, Maximilian Schmid, Tamara Madácsy, Árpád Varga, Joscha Griger, Ninel Azoitei, Martin Müller, Oliver Wessely, Pamela G. Robey, Sandra Heller, Zahra Dantes, Maximilian Reicher
Published in:
Cell Stem Cell, Issue 28, 2023, Page(s) 1105-1124.e19, ISSN 1934-5909
Publisher:
Cell Press
DOI:
10.1016/j.stem.2021.03.005
Author(s):
Shaoshan Mai, Iwona Inkielewicz-Stepniak
Published in:
International Journal of Molecular Sciences, Issue 25, 2024, Page(s) 1066, ISSN 1422-0067
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/ijms25021066
Author(s):
Hang He, Shuman Zhang, Hai Yang, Pengyan Xu, Isabella Kutschick, Susanne Pfeffer, Nathalie Britzen-Laurent, Robert Grützmann, Deliang Fu, Christian Pilarsky
Published in:
Cancers, Issue 15, 2023, Page(s) 241, ISSN 2072-6694
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/cancers15010241
Author(s):
Mark P. G. Dings, Paul Manoukian, Cynthia Waasdorp, Judith S. E. Quik, Marin Strijker, Sophie C. Lodestijn, Sanne M. van Neerven, Leandro F. Moreno, Rodrigo Leite de Oliveira, Bert A. Bonsing, Marco J. Bruno, Olivier R. Busch, Michael Doukas, Casper H. van Eijck, Nadia Haj Mohammad, Ignace H. de Hingh, Quintus I. Molenaar, Marc G. Besselink, Louis Vermeulen, Jan Paul Medema, Hanneke W. M. van Laar
Published in:
International Journal of Cancer, Issue 152, 2023, Page(s) 511-523, ISSN 0020-7136
Publisher:
John Wiley & Sons Inc.
DOI:
10.1002/ijc.34276
Author(s):
Marlene Geyer, Karla Queiroz
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.761807
Author(s):
Negar Abbasi Aval, Ekeram Lahchaichi, Oana Tudoran, Farzaneh Fayazbakhsh, Rainer Heuchel, Matthias Löhr, Torbjörn Pettersson, Aman Russom
Published in:
Biomedicines, Issue 11, 2023, Page(s) 3061, ISSN 2227-9059
Publisher:
MDPI
DOI:
10.3390/biomedicines11113061
Author(s):
Siyuan Zeng, Bin Lan, Xiaofan Ren, Shuman Zhang, Daniel Schreyer, Markus Eckstein, Hai Yang, Nathalie Britzen-Laurent, Andreas Dahl, Debabrata Mukhopadhyay, David Chang, Isabella Kutschick, Susanne Pfeffer, Peter Bailey, Andrew Biankin, Robert Grützmann, Christian Pilarsky
Published in:
Journal of Experimental & Clinical Cancer Research, Issue 41, 2023, ISSN 1756-9966
Publisher:
SpringerNature
DOI:
10.1186/s13046-022-02443-w
Author(s):
Sebastian Lange, Thomas Engleitner, Sebastian Mueller, Roman Maresch, Maximilian Zwiebel, Laura González-Silva, Günter Schneider, Ruby Banerjee, Fengtang Yang, George S. Vassiliou, Mathias J. Friedrich, Dieter Saur, Ignacio Varela, Roland Rad
Published in:
Nature Protocols, Issue 15, 2023, Page(s) 266-315, ISSN 1754-2189
Publisher:
Nature Publishing Group
DOI:
10.1038/s41596-019-0234-7
Author(s):
Antonia Malinova, Lisa Veghini, Francisco X. Real, Vincenzo Corbo
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.795251
Author(s):
Bin Lan, Siyuan Zeng, Shuman Zhang, Xiaofan Ren, Yuming Xing, Isabella Kutschick, Susanne Pfeffer, Benjamin Frey, Nathalie Britzen-Laurent, Robert Grützmann, Nils Cordes, Christian Pilarsky
Published in:
Cancers, Issue 14, 2024, Page(s) 326, ISSN 2072-6694
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/cancers14020326
Author(s):
Sushmitha Sankarasubramanian, Ulrike Pfohl, Christian R. A. Regenbrecht, Christoph Reinhard, Lena Wedeken
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.760705
Author(s):
María Lasierra Losada, Melissa Pauler, Niels Vandamme, Steven Goossens, Geert Berx, Moritz Leppkes, Harald Schuhwerk, Simone Brabletz, Thomas Brabletz, Marc P. Stemmler
Published in:
Cell Death Discovery, Issue 7, 2022, ISSN 2058-7716
Publisher:
SpringerNature
DOI:
10.1038/s41420-021-00522-z
Author(s):
Marlene Geyer, Lisa-Marie Gaul, Sabrina Luigia D`Agosto, Vincenzo Corbo, Karla Queiroz
Published in:
Frontiers in Immunology, Issue 14, 2023, ISSN 1664-3224
Publisher:
Frontiers
DOI:
10.3389/fimmu.2023.1155085
Author(s):
Carlotta Cattolico, Peter Bailey, Simon T. Barry
Published in:
Frontiers in Cell and Developmental Biology, Issue 10, 2023, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2022.816517
Author(s):
Simone Brabletz, Harald Schuhwerk, Thomas Brabletz, Marc P. Stemmler
Published in:
The EMBO Journal, Issue 40, 2023, ISSN 0261-4189
Publisher:
Nature Publishing Group
DOI:
10.15252/embj.2021108647
Author(s):
Harald Schuhwerk, Julia Kleemann, Pooja Gupta, Ruthger van Roey, Isabell Armstark, Martina Kreileder, Nora Feldker, Vignesh Ramesh, Yussuf Hajjaj, Kathrin Fuchs, Mousumi Mahapatro, Mojca Hribersek, Marco Volante, Arwin Groenewoud, Felix B. Engel, Paolo Ceppi, Markus Eckstein, Arndt Hartmann, Fabian Müller, Torsten Kroll, Marc P. Stemmler, Simone Brabletz, Thomas Brabletz
Published in:
Cell Reports, Issue 41, 2024, Page(s) 111819, ISSN 2211-1247
Publisher:
Cell Press
DOI:
10.1016/j.celrep.2022.111819
Author(s):
Beate Gündel, Xinyuan Liu, Matthias Löhr, Rainer Heuchel
Published in:
Frontiers in Cell and Developmental Biology, Issue 9, 2021, ISSN 2296-634X
Publisher:
Frontiers
DOI:
10.3389/fcell.2021.741162
Author(s):
Sabrina D’Agosto, Elena Fiorini, Francesco Pezzini, Pietro Delfino, Michele Simbolo, Caterina Vicentini, Silvia Andreani, Paola Capelli, Borislav Rusev, Rita T. Lawlor, Claudio Bassi, Luca Landoni, Antonio Pea, Claudio Luchini, Aldo Scarpa, Vincenzo Corbo
Published in:
Frontiers in Endocrinology, Issue 14, 2023, ISSN 1664-2392
Publisher:
Frontiers
DOI:
10.3389/fendo.2023.999792
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