Accelerated Development of multiple-stress tolerAnt PoTato

Información del proyecto

ADAPT

Identificador del acuerdo de subvención: 862858

DOI

10.3030/862858

Proyecto cerrado

Fecha de la firma de la CE 27 Junio 2020

Fecha de inicio 1 Julio 2020

Fecha de finalización 31 Octubre 2024

Financiado con arreglo a

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Coste total

€ 4 999 973,75

Aportación de la UE

€ 4 999 972,00

Coordinado por

UNIVERSITAT WIEN
Austria

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Demonstrators, pilots, prototypes (8)

Potato ‘omics data analysis pipelines

Potato ‘omics data analysis pipelines standardised and made available for the scientific community (M30)

PEDR first update and adjustment

Initial Plan for Exploitation and Dissemination of Results PEDR (M6), which will define handling of IPR issues, goals/targets of dissemination and implementation in commercial products of the breeders. This plan will be continuously updated throughout the project (M12, 24 up to M48)

PEDR established

Initial Plan for Exploitation and Dissemination of Results PEDR will define handling of IPR issues, goals/targets of dissemination and implementation in commercial products of the breeders. This plan will be continuously updated throughout the project.

PEDR second update and adjustment

Initial Plan for Exploitation and Dissemination of Results PEDR (M6), which will define handling of IPR issues, goals/targets of dissemination and implementation in commercial products of the breeders. This plan will be continuously updated throughout the project (M12, 24 up to M48)

Communication infrastructure established

Communication infrastructure established; the project website goes online to allow sharing of generated data, and general information (M6)

StressKnowledgeMap

StressKnowledgeMap: web application enabling standardised construction of integrated knowledge network and its interrogation (M15)

PEDR third update

Initial Plan for Exploitation and Dissemination of Results PEDR (M6), which will define handling of IPR issues, goals/targets of dissemination and implementation in commercial products of the breeders. This plan will be continuously updated throughout the project (M12, 24 up to M48)

Data visualisation tools updated

Data visualisation tools updated based on the updates in knowledge network (M18)

Open Research Data Pilot (1)

ORD pilot and Data Management Plan

Data Management Plan DMP implemented and guidelines for Open Research Data pilot defined M6

Documents, reports (2)

Report on field day/workshop

One joint field day and one joint workshop organized with other EU projects funded under this call or in a similar topic (M24 and M42)

Report of farmers' perception survey

Descriptive report of farmers perception survey and set of recommendations for dissemination activities M12

Publicaciones

Peer reviewed articles (32)

Analysis of abiotic and biotic stress-induced Ca2+ transients in the crop species Solanum tuberosum

Autores: Annelotte van Dieren, Roland E. Schwarzenbacher, Sophia Sonnewald, Andras Bittner, Ute C. Vothknecht
Publicado en: Scientific Reports, Edición 14, 2024, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-024-79134-3

Survey of Potato Growers’ Perception of Climate Change and Its Impacts on Potato Production in Germany, Switzerland, and Austria

Autores: Svenja Bomers, Alexandra Ribarits, Anita Kamptner, Tanja Tripolt, Philipp von Gehren, Noémie Prat, Josef Söllinger
Publicado en: Agronomy, Edición 14, 2024, Página(s) 1399, ISSN 2073-4395
Editor: MDPI AG
DOI: 10.3390/agronomy14071399

TGA transcription factors—Structural characteristics as basis for functional variability

Autores: Špela Tomaž; Špela Tomaž; Kristina Gruden; Anna Coll
Publicado en: Crossref, Edición 3, 2022, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.935819

Profiling of 1-aminocyclopropane-1-carboxylic acid and selected phytohormones in Arabidopsis using liquid chromatography-tandem mass spectrometry

Autores: Michal Karady, Pavel Hladík, Kateřina Cermanová, Petra Jiroutová, Ioanna Antoniadi, Rubén Casanova-Sáez, Karin Ljung, Ondřej Novák
Publicado en: Plant Methods, Edición 20, 2024, ISSN 1746-4811
Editor: BioMed Central
DOI: 10.1186/s13007-024-01165-8

Integration of multi-omics data and deep phenotyping provides insights into responses to single and combined abiotic stress in potato

Autores: Maja Zagorščak, Lamis Abdelhakim, Natalia Yaneth Rodriguez-Granados, Jitka Široká, Arindam Ghatak, Carissa Bleker, Andrej Blejec, Jan Zrimec, Ondřej Novák, Aleš Pěnčík, Špela Baebler, Lucia Perez Borroto, Christian Schuy, Anže Županič, Leila Afjehi-Sadat, Bernhard Wurzinger, Wolfram Weckwerth, Maruša Pompe Novak, Marc R Knight, Miroslav Strnad, Christian Bachem, Palak Chaturvedi, So
Publicado en: Plant Physiology, Edición 197, 2025, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiaf126

Evidence-based unification of potato gene models with the UniTato collaborative genome browser

Autores: Maja Zagorščak, Jan Zrimec, Carissa Bleker, Nadja Nolte, Mojca Juteršek, Živa Ramšak, Kristina Gruden, Marko Petek
Publicado en: Frontiers in Plant Science, Edición 15, 2024, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1352253

Calcium signaling: an emerging player in plant antiviral defense

Autores: Anna S Zvereva, Michael Klingenbrunner, Markus Teige
Publicado en: Journal of Experimental Botany, Edición 75, 2024, Página(s) 1265-1273, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/erad442

Assimilate highway to sink organs – Physiological consequences of SP6A overexpression in transgenic potato (Solanum tuberosum L.)

Autores: Günter G.Lehretz SophiaSonnewald UweSonnewald
Publicado en: Journal of Plant Physiology, Edición 226, 2021, Página(s) 153530, ISSN 0176-1617
Editor: Elsevier BV
DOI: 10.1016/j.jplph.2021.153530

pISA-tree - a data management framework for life science research projects using a standardised directory tree

Autores: Marko Petek, Maja Zagorščak, Andrej Blejec, Živa Ramšak, Anna Coll, Špela Baebler & Kristina Gruden
Publicado en: Scientific data, 2022, ISSN 2052-4463
Editor: Nature Research
DOI: 10.1038/s41597-022-01805-5

Cell-type proteomic and metabolomic resolution of early and late grain filling stages of wheat endosperm

Autores: Shuang Zhang, Arindam Ghatak, Mitra Mohammadi Bazargani, Hannes Kramml, Fujuan Zang, Shuang Gao, Živa Ramšak, Kristina Gruden, Rajeev K. Varshney, Dong Jiang, Palak Chaturvedi, Wolfram Weckwerth
Publicado en: Plant Biotechnology Journal, 2023, ISSN 1467-7652
Editor: John Wiley & Sons
DOI: 10.1111/pbi.14203

High Throughput Image-Based Phenotyping for Determining Morphological and Physiological Responses to Single and Combined Stresses in Potato

Autores: Lamis Osama Anwar Abdelhakim, Barbora Pleskačová, Natalia Yaneth Rodriguez-Granados, Rashmi Sasidharan, Lucia Sandra Perez-Borroto, Sophia Sonnewald, Kristina Gruden, Ute C. Vothknecht, Markus Teige, Klára Panzarová
Publicado en: Journal of Visualized Experiments, 2024, ISSN 1940-087X
Editor: MYJoVE Corporation
DOI: 10.3791/66255

Chloroplast redox state changes mark cell-to-cell signaling in the hypersensitive response

Autores: Tjaša Lukan, Anže Županič, Tjaša Mahkovec Povalej, Jacob O. Brunkard, Mirjam Kmetič, Mojca Juteršek, Špela Baebler, Kristina Gruden
Publicado en: New Physiologist, 2022, ISSN 1469-8137
Editor: John Wiley & Sons
DOI: 10.1111/nph.18425

Water stress resilient cereal crops: lessons from wild relatives

Autores: Toulotte JM, Pantazopoulou CK, Sanclemente MA, Voesenek LA, Sasidharan R.
Publicado en: Journal of Integrative Plant Biology, 2022, Página(s) Online ahead of print, ISSN 1365-313X
Editor: Wiley
DOI: 10.1111/jipb.13222

Organelles and phytohormones: a network of interactions in plant stress responses

Autores: Andras Bittner, Agata Cieśla, Kristina Gruden, Tjaša Lukan, Sakil Mahmud, Markus Teige, Ute C Vothknecht, Bernhard Wurzinger Author Notes
Publicado en: Journal of Experimental Botany, 2022, ISSN 1460-2431
Editor: Oxford University Press
DOI: 10.1093/jxb/erac384

Profiling of 1-aminocyclopropane-1-carboxylic acid and selected phytohormones in Arabidopsis using liquid chromatography-tandem mass spectrometry

Autores: Karady, Michal; Hladík, Pavel; Cermanová, Kateřina; Jiroutová, Petra; Antoniadi, Ioanna; Casanova-Sáez, Rubén; Ljung, Karin; Novák, Ondřej
Publicado en: Crossref, Edición 1, 2024, ISSN 1746-4811
Editor: BioMed Central
DOI: 10.1186/s13007-024-01165-8

<scp>GERMIN3</scp> regulates tuber initiation and axillary bud activation by facilitating plasmodesmatal gating

Autores: Raymond Campbell, Graham Cowan, Bernhard Wurzinger, Laurence J. M. Ducreux, Jimmy Dessoly, Wenbin Guo, Runxuan Zhang, Jenny A. Morris, Pete Hedley, Vanessa Wahl, Mark A. Taylor, Robert D. Hancock
Publicado en: The Plant Journal, Edición 122, 2025, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.70186

Low dose ribosomal DNA P-loop mutation affects development and enforces autophagy in Arabidopsis

Autores: Thiruvenkadam Shanmugam, Palak Chaturvedi, Deniz Streit, Arindam Ghatak, Thorsten Bergelt, Stefan Simm, Wolfram Weckwerth & Enrico Schleiff
Publicado en: RNA Biology, 2023, ISSN 1555-8584
Editor: Taylor&Francis
DOI: 10.1080/15476286.2023.2298532

stress knowledge map: a knowledge graph resource for systems biology analysis of plant stress responses

Autores: Carissa Bleker, Živa Ramšak, Andras Bittner, Vid Podpečan ,Maja Zagorščak, Bernhard Wurzinger, Špela Baebler, Marko Petek, Maja Križnik, Annelotte van Dieren, Juliane Gruber, Leila Afjehi-Sadat, Wolfram Weckwerth, Anže Županič, Markus Teige, Ute C. Vothknecht, Kristina Gruden
Publicado en: Plant Communications, Edición Volume 5.Edición. 5,May 13, 2024, 2024, ISSN 0092-8674
Editor: Cell Press
DOI: 10.1016/j.xplc.2024.100920

A helping hand when drowning: The versatile role of ethylene in root flooding resilience

Autores: Hendrika A.C.F. Leeggangers 1, Natalia Yaneth Rodriguez-Granados 1, Monika Gyöngyi Macias-Honti 1, Rashmi Sasidharan
Publicado en: Environmental and Experimental Botany, 2023, ISSN 1873-7307
Editor: Elsevier B.V.
DOI: 10.1016/j.envexpbot.2023.105422

A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors

Autores: Špela Tomaž, Marko Petek, Tjaša Lukan, Karmen Pogačar, Katja Stare, Erica Teixeira Prates, Daniel A Jacobson, Jan Zrimec, Gregor Bajc, Matej Butala, Maruša Pompe Novak, Quentin Dudley, Nicola Patron, Ajda Taler-Verčič, Aleksandra Usenik, Dušan Turk, Salomé Prat, Anna Coll, Kristina Gruden
Publicado en: Plant Physiology, 2023, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac579

Cold plasma within a stable supercavitation bubble – A breakthrough technology for efficient inactivation of viruses in water

Autores: Arijana Filipić a, David Dobnik a, Ion Gutiérrez-Aguirre a, Maja Ravnikar a, Tamara Košir a, Špela Baebler a, Alja Štern b, Bojana Žegura b, Martin Petkovšek c, Matevž Dular c, Miran Mozetič d, Rok Zaplotnik d, Gregor Primc d
Publicado en: Enviroment International, 2023, ISSN 1873-6750
Editor: PERGAMON-ELSEVIER SCIENCE LTD.
DOI: 10.1016/j.envint.2023.108285

Spatial control of potato tuberization by the TCP transcription factor BRANCHED1b

Autores: Michael Nicolas 1 , Rafael Torres-Pérez 2 , Vanessa Wahl 3 , Eduard Cruz-Oró 4 , María Luisa Rodríguez-Buey 4 , Angel María Zamarreño 5 , Beatriz Martín-Jouve 6 , José María García-Mina 5 , Juan Carlos Oliveros 2 , Salomé Prat 4 7 , Pilar Cubas 8
Publicado en: Nature plants, 2022, ISSN 2055-0278
Editor: Nature Publishing Group
DOI: 10.1038/s41477-022-01112-2.

Farmers Feel the Climate Change: Variety Choice as an Adaptation Strategy of European Potato Farmers

Autores: Philipp von Gehren 1, Svenja Bomers 1, Tanja Tripolt 2, Josef Söllinger 3, Noémie Prat 1, Berta Redondo 4, Romans Vorss 4, Markus Teige 5 , Anita Kamptner 6 and Alexandra Ribarits 1,*
Publicado en: Climate, 2023, ISSN 2225-1154
Editor: MDPI
DOI: 10.3390/cli11090189

Analytical Methods for Brassinosteroid Analysis: Recent Advances and Applications

Autores: Jana Oklestkova, Miroslav Kvasnica, Miroslav Strnad
Publicado en: Plant And Cell Physiology, Edición 65, 2024, Página(s) 1618-1626, ISSN 0032-0781
Editor: Oxford University Press
DOI: 10.1093/pcp/pcae038

Allelic variants of a potato HEAT SHOCK COGNATE 70 gene confer improved tuber yield under a wide range of environmental conditions

Autores: Raymond Campbell, Laurence Ducreux, Graham Cowan, Vanessa Young, Gift Chinoko, Gloria Chitedze, Stanley Kwendani, Margaret Chiipanthenga, Craita E. Bita, Obed Mwenye, Hassan Were, Lesley Torrance, Sanjeev Kumar Sharma, Robert D. Hancock, Glenn J. Bryan, Mark Taylor
Publicado en: Food and Energy Security, 2022, ISSN 2048-3694
Editor: John Wiley & Sons
DOI: 10.1002/fes3.377

Identification of heat stress-related genomic regions by genome-wide association study in Solanum tuberosum

Autores: Alexander Kaier, Selina Beck, Markus Ingold, José María Corral, Stephan Reinert, Uwe Sonnewald, Sophia Sonnewald
Publicado en: Genomics, Edición 116, 2024, Página(s) 110954, ISSN 0888-7543
Editor: Academic Press
DOI: 10.1016/j.ygeno.2024.110954

Biosensors: A Sneak Peek into Plant Cell’s Immunity

Autores: Valentina Levak 1,2,*, Tjaša Lukan 1 , Kristina Gruden 1 and Anna Coll 1
Publicado en: Life, 2021, ISSN 2075-1729
Editor: MDPI
DOI: 10.3390/life11030209

<scp>StCDF1</scp>: A ‘<i>jack of all trades</i>’ clock output with a central role in regulating potato nitrate reduction activity

Autores: Maroof Ahmed Shaikh, Lorena Ramírez‐Gonzales, José M. Franco‐Zorrilla, Evyatar Steiner, Marian Oortwijn, Christian W. B. Bachem, Salomé Prat
Publicado en: New Phytologist, Edición 245, 2025, Página(s) 282-298, ISSN 0028-646X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/nph.20186

Paintomics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases

Autores: Tianyuan Liu1, Pedro Salguero2, Marko Petek 3, Carlos Martinez-Mira4, Leandro Balzano-Nogueira5, Zˇiva Ramsˇak 3, Lauren McIntyre6, Kristina Gruden3, Sonia Tarazona2 and Ana Conesa
Publicado en: Nucleic Acid Research, 2022, Página(s) Pages W551–W559, ISSN 1362-4962
Editor: Oxford University Press
DOI: 10.1093/nar/gkac352

Phased, chromosome-scale genome assemblies of tetraploid potato reveals a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity

Autores: Genevieve Hoopes, Xiaoxi Meng, John P. Hamilton, Sai Reddy Achakkagari, Fernanda de Alves Freitas Guesdes, Marie E. Bolger, Joseph J. Coombs, Danny Esselink, Natalie R. Kaiser, Linda Kodde, Maria Kyriakidou, Brian Lavrijssen, Natascha van Lieshout, Rachel Shereda, Heather K. Tuttle, Brieanne Vaillancourt, Joshua C. Wood, Jan M. de Boer, Nolan Bornowski, Peter Bourke, David Douches, Herman J. van E
Publicado en: MOLECULAR PLANT, Edición Online ahead of print, 2022, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2022.01.003

Intertwined Roles of Reactive Oxygen Species and Salicylic Acid Signaling Are Crucial for the Plant Response to Biotic Stress

Autores: Tjaša Lukan and Anna Coll
Publicado en: Molecular Science, 2022, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23105568

TGA transcription factors—Structural characteristics as basis for functional variability

Autores: Špela Tomaž, Kristina Gruden, Anna Coll
Publicado en: Frontiers in Plant Science, Edición 13, 2024, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.935819

Other (1)

Haplotype-resolved genome assembly of the tetraploid potato cultivar Desiree

Autores: Tim Godec, Sebastian Beier, Natalia Yaneth Rodriguez-Granados, Rashmi Sasidharan, Lamis Abdelhakim, Markus Teige, Bjorn Usadel, Kristina Gruden, Marko Petek
Publicado en: 2025
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.14.631659

Book chapters (4)

Toward the Design of Potato Tolerant to Abiotic Stress

Autores: Raymond Campbell, Laurence J. M. Ducreux, Elena Mellado-Ortega, Robert D. Hancock & Mark A. Taylor
Publicado en: Solanum tuberosum - Methods and Protocols, 2021, Página(s) pp 387–399, ISBN 978-1-0716-1609-3
Editor: Humana, New York, NY
DOI: 10.1007/978-1-0716-1609-3_19

Methodologies for Discovery and Quantitative Profiling of sRNAs in Potato

Autores: DOBNIK, David, GRUDEN, Kristina, RAMŠAK, Živa, COLL RIUS, Anna
Publicado en: Methods in molecular biology, Edición 2354, 2021, ISBN 978-1-0716-1609-3
Editor: Humana Press, cop.
DOI: 10.1007/978-1-0716-1609-3_11

RNA Sequencing Analyses for Deciphering Potato Molecular Responses

Autores: Živa Ramšak, Marko Petek & Špela Baebler
Publicado en: Solanum tuberosum - Methods and Protocols, 2021, Página(s) pp 57–94
Editor: Humana, New York, NY
DOI: 10.1007/978-1-0716-1609-3_3

A Comprehensive Guide to Potato Transcriptome Assembly

Autores: Maja Zagorščak, Marko Petek
Publicado en: Methods in Molecular Biology, Solanum tuberosum, 2023, Página(s) 155-192
Editor: Springer US
DOI: 10.1007/978-1-0716-1609-3_8

Conference proceedings (2)

ADAPT –Accelerated development of multiple-stress tolerant potato

Autores: Ribarits A, von Gehren P, Bomers S, Prat N, Tripolt T, Söllinger J
Publicado en: Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs (Ed), 71. Jahrestagung 2020, 2021, Página(s) 35-36
Editor: BOKU-University of Natural Resources and Life Sciences

DAP-Seq Identification of Transcription Factor-Binding Sites in Potato

Autores: José M. Franco-Zorrilla & Salomé Prat
Publicado en: Solanum tuberosum - Methods and Protocols, 2021, Página(s) pp 123–142, ISBN 978-1-0716-1609-3
Editor: Humana, New York, NY
DOI: 10.1007/978-1-0716-1609-3_6

Monographic books (1)

Solanum tuberosum - Methods and Protocols

Autores: David Dobnik, Kristina Gruden, Živa Ramšak, Anna Coll
Publicado en: Solanum tuberosum - Methods and Protocols, 2021, ISBN 978-1-0716-1609-3
Editor: Humana New York, NY
DOI: 10.1007/978-1-0716-1609-3