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Accelerated Development of multiple-stress tolerAnt PoTato

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Potato ‘omics data analysis pipelines (opens in new window)

Potato ‘omics data analysis pipelines standardised and made available for the scientific community (M30)

PEDR first update and adjustment (opens in new window)

Initial Plan for Exploitation and Dissemination of Results PEDR (M6), which will define handling of IPR issues, goals/targets of dissemination and implementation in commercial products of the breeders. This plan will be continuously updated throughout the project (M12, 24 up to M48)

PEDR established (opens in new window)

Initial Plan for Exploitation and Dissemination of Results PEDR will define handling of IPR issues, goals/targets of dissemination and implementation in commercial products of the breeders. This plan will be continuously updated throughout the project.

PEDR second update and adjustment (opens in new window)

Initial Plan for Exploitation and Dissemination of Results PEDR (M6), which will define handling of IPR issues, goals/targets of dissemination and implementation in commercial products of the breeders. This plan will be continuously updated throughout the project (M12, 24 up to M48)

Communication infrastructure established (opens in new window)

Communication infrastructure established; the project website goes online to allow sharing of generated data, and general information (M6)

StressKnowledgeMap (opens in new window)

StressKnowledgeMap: web application enabling standardised construction of integrated knowledge network and its interrogation (M15)

PEDR third update (opens in new window)

Initial Plan for Exploitation and Dissemination of Results PEDR (M6), which will define handling of IPR issues, goals/targets of dissemination and implementation in commercial products of the breeders. This plan will be continuously updated throughout the project (M12, 24 up to M48)

Data visualisation tools updated (opens in new window)

Data visualisation tools updated based on the updates in knowledge network (M18)

ORD pilot and Data Management Plan (opens in new window)

Data Management Plan DMP implemented and guidelines for Open Research Data pilot defined M6

Report on field day/workshop (opens in new window)

One joint field day and one joint workshop organized with other EU projects funded under this call or in a similar topic (M24 and M42)

Report of farmers' perception survey (opens in new window)

Descriptive report of farmers perception survey and set of recommendations for dissemination activities M12

Publications

TGA transcription factors—Structural characteristics as basis for functional variability (opens in new window)

Author(s): Špela Tomaž; Špela Tomaž; Kristina Gruden; Anna Coll
Published in: Crossref, Issue 3, 2022, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.935819

Evidence-based unification of potato gene models with the UniTato collaborative genome browser (opens in new window)

Author(s): Maja Zagorščak, Jan Zrimec, Carissa Bleker, Nadja Nolte, Mojca Juteršek, Živa Ramšak, Kristina Gruden, Marko Petek
Published in: Frontiers in Plant Science, Issue 15, 2024, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1352253

Assimilate highway to sink organs – Physiological consequences of SP6A overexpression in transgenic potato (Solanum tuberosum L.) (opens in new window)

Author(s): Günter G.Lehretz SophiaSonnewald UweSonnewald
Published in: Journal of Plant Physiology, Issue 226, 2021, Page(s) 153530, ISSN 0176-1617
Publisher: Elsevier BV
DOI: 10.1016/j.jplph.2021.153530

pISA-tree - a data management framework for life science research projects using a standardised directory tree (opens in new window)

Author(s): Marko Petek, Maja Zagorščak, Andrej Blejec, Živa Ramšak, Anna Coll, Špela Baebler & Kristina Gruden
Published in: Scientific data, 2022, ISSN 2052-4463
Publisher: Nature Research
DOI: 10.1038/s41597-022-01805-5

Cell-type proteomic and metabolomic resolution of early and late grain filling stages of wheat endosperm (opens in new window)

Author(s): Shuang Zhang, Arindam Ghatak, Mitra Mohammadi Bazargani, Hannes Kramml, Fujuan Zang, Shuang Gao, Živa Ramšak, Kristina Gruden, Rajeev K. Varshney, Dong Jiang, Palak Chaturvedi, Wolfram Weckwerth
Published in: Plant Biotechnology Journal, 2023, ISSN 1467-7652
Publisher: John Wiley & Sons
DOI: 10.1111/pbi.14203

High Throughput Image-Based Phenotyping for Determining Morphological and Physiological Responses to Single and Combined Stresses in Potato (opens in new window)

Author(s): Lamis Osama Anwar Abdelhakim, Barbora Pleskačová, Natalia Yaneth Rodriguez-Granados, Rashmi Sasidharan, Lucia Sandra Perez-Borroto, Sophia Sonnewald, Kristina Gruden, Ute C. Vothknecht, Markus Teige, Klára Panzarová
Published in: Journal of Visualized Experiments, 2024, ISSN 1940-087X
Publisher: MYJoVE Corporation
DOI: 10.3791/66255

Chloroplast redox state changes mark cell-to-cell signaling in the hypersensitive response (opens in new window)

Author(s): Tjaša Lukan, Anže Županič, Tjaša Mahkovec Povalej, Jacob O. Brunkard, Mirjam Kmetič, Mojca Juteršek, Špela Baebler, Kristina Gruden
Published in: New Physiologist, 2022, ISSN 1469-8137
Publisher: John Wiley & Sons
DOI: 10.1111/nph.18425

Water stress resilient cereal crops: lessons from wild relatives (opens in new window)

Author(s): Toulotte JM, Pantazopoulou CK, Sanclemente MA, Voesenek LA, Sasidharan R.
Published in: Journal of Integrative Plant Biology, 2022, Page(s) Online ahead of print, ISSN 1365-313X
Publisher: Wiley
DOI: 10.1111/jipb.13222

Organelles and phytohormones: a network of interactions in plant stress responses (opens in new window)

Author(s): Andras Bittner, Agata Cieśla, Kristina Gruden, Tjaša Lukan, Sakil Mahmud, Markus Teige, Ute C Vothknecht, Bernhard Wurzinger Author Notes
Published in: Journal of Experimental Botany, 2022, ISSN 1460-2431
Publisher: Oxford University Press
DOI: 10.1093/jxb/erac384

Profiling of 1-aminocyclopropane-1-carboxylic acid and selected phytohormones in Arabidopsis using liquid chromatography-tandem mass spectrometry (opens in new window)

Author(s): Karady, Michal; Hladík, Pavel; Cermanová, Kateřina; Jiroutová, Petra; Antoniadi, Ioanna; Casanova-Sáez, Rubén; Ljung, Karin; Novák, Ondřej
Published in: Crossref, Issue 1, 2024, ISSN 1746-4811
Publisher: BioMed Central
DOI: 10.1186/s13007-024-01165-8

Low dose ribosomal DNA P-loop mutation affects development and enforces autophagy in Arabidopsis (opens in new window)

Author(s): Thiruvenkadam Shanmugam, Palak Chaturvedi, Deniz Streit, Arindam Ghatak, Thorsten Bergelt, Stefan Simm, Wolfram Weckwerth & Enrico Schleiff
Published in: RNA Biology, 2023, ISSN 1555-8584
Publisher: Taylor&Francis
DOI: 10.1080/15476286.2023.2298532

stress knowledge map: a knowledge graph resource for systems biology analysis of plant stress responses (opens in new window)

Author(s): Carissa Bleker, Živa Ramšak, Andras Bittner, Vid Podpečan ,Maja Zagorščak, Bernhard Wurzinger, Špela Baebler, Marko Petek, Maja Križnik, Annelotte van Dieren, Juliane Gruber, Leila Afjehi-Sadat, Wolfram Weckwerth, Anže Županič, Markus Teige, Ute C. Vothknecht, Kristina Gruden
Published in: Plant Communications, Issue Volume 5.Issue. 5,May 13, 2024, 2024, ISSN 0092-8674
Publisher: Cell Press
DOI: 10.1016/j.xplc.2024.100920

A helping hand when drowning: The versatile role of ethylene in root flooding resilience (opens in new window)

Author(s): Hendrika A.C.F. Leeggangers 1, Natalia Yaneth Rodriguez-Granados 1, Monika Gyöngyi Macias-Honti 1, Rashmi Sasidharan
Published in: Environmental and Experimental Botany, 2023, ISSN 1873-7307
Publisher: Elsevier B.V.
DOI: 10.1016/j.envexpbot.2023.105422

A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors (opens in new window)

Author(s): Špela Tomaž, Marko Petek, Tjaša Lukan, Karmen Pogačar, Katja Stare, Erica Teixeira Prates, Daniel A Jacobson, Jan Zrimec, Gregor Bajc, Matej Butala, Maruša Pompe Novak, Quentin Dudley, Nicola Patron, Ajda Taler-Verčič, Aleksandra Usenik, Dušan Turk, Salomé Prat, Anna Coll, Kristina Gruden
Published in: Plant Physiology, 2023, ISSN 0032-0889
Publisher: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac579

Cold plasma within a stable supercavitation bubble – A breakthrough technology for efficient inactivation of viruses in water (opens in new window)

Author(s): Arijana Filipić a, David Dobnik a, Ion Gutiérrez-Aguirre a, Maja Ravnikar a, Tamara Košir a, Špela Baebler a, Alja Štern b, Bojana Žegura b, Martin Petkovšek c, Matevž Dular c, Miran Mozetič d, Rok Zaplotnik d, Gregor Primc d
Published in: Enviroment International, 2023, ISSN 1873-6750
Publisher: PERGAMON-ELSEVIER SCIENCE LTD.
DOI: 10.1016/j.envint.2023.108285

Spatial control of potato tuberization by the TCP transcription factor BRANCHED1b (opens in new window)

Author(s): Michael Nicolas 1 , Rafael Torres-Pérez 2 , Vanessa Wahl 3 , Eduard Cruz-Oró 4 , María Luisa Rodríguez-Buey 4 , Angel María Zamarreño 5 , Beatriz Martín-Jouve 6 , José María García-Mina 5 , Juan Carlos Oliveros 2 , Salomé Prat 4 7 , Pilar Cubas 8
Published in: Nature plants, 2022, ISSN 2055-0278
Publisher: Nature Publishing Group
DOI: 10.1038/s41477-022-01112-2.

Farmers Feel the Climate Change: Variety Choice as an Adaptation Strategy of European Potato Farmers (opens in new window)

Author(s): Philipp von Gehren 1, Svenja Bomers 1, Tanja Tripolt 2, Josef Söllinger 3, Noémie Prat 1, Berta Redondo 4, Romans Vorss 4, Markus Teige 5 , Anita Kamptner 6 and Alexandra Ribarits 1,*
Published in: Climate, 2023, ISSN 2225-1154
Publisher: MDPI
DOI: 10.3390/cli11090189

Allelic variants of a potato HEAT SHOCK COGNATE 70 gene confer improved tuber yield under a wide range of environmental conditions (opens in new window)

Author(s): Raymond Campbell, Laurence Ducreux, Graham Cowan, Vanessa Young, Gift Chinoko, Gloria Chitedze, Stanley Kwendani, Margaret Chiipanthenga, Craita E. Bita, Obed Mwenye, Hassan Were, Lesley Torrance, Sanjeev Kumar Sharma, Robert D. Hancock, Glenn J. Bryan, Mark Taylor
Published in: Food and Energy Security, 2022, ISSN 2048-3694
Publisher: John Wiley & Sons
DOI: 10.1002/fes3.377

Identification of heat stress-related genomic regions by genome-wide association study in Solanum tuberosum (opens in new window)

Author(s): Alexander Kaier, Selina Beck, Markus Ingold, José María Corral, Stephan Reinert, Uwe Sonnewald, Sophia Sonnewald
Published in: Genomics, Issue 116, 2024, Page(s) 110954, ISSN 0888-7543
Publisher: Academic Press
DOI: 10.1016/j.ygeno.2024.110954

Biosensors: A Sneak Peek into Plant Cell’s Immunity (opens in new window)

Author(s): Valentina Levak 1,2,*, Tjaša Lukan 1 , Kristina Gruden 1 and Anna Coll 1
Published in: Life, 2021, ISSN 2075-1729
Publisher: MDPI
DOI: 10.3390/life11030209

<scp>StCDF1</scp>: A ‘<i>jack of all trades</i>’ clock output with a central role in regulating potato nitrate reduction activity (opens in new window)

Author(s): Maroof Ahmed Shaikh, Lorena Ramírez‐Gonzales, José M. Franco‐Zorrilla, Evyatar Steiner, Marian Oortwijn, Christian W. B. Bachem, Salomé Prat
Published in: New Phytologist, Issue 245, 2025, Page(s) 282-298, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.20186

Paintomics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases (opens in new window)

Author(s): Tianyuan Liu1, Pedro Salguero2, Marko Petek 3, Carlos Martinez-Mira4, Leandro Balzano-Nogueira5, Zˇiva Ramsˇak 3, Lauren McIntyre6, Kristina Gruden3, Sonia Tarazona2 and Ana Conesa
Published in: Nucleic Acid Research, 2022, Page(s) Pages W551–W559, ISSN 1362-4962
Publisher: Oxford University Press
DOI: 10.1093/nar/gkac352

Phased, chromosome-scale genome assemblies of tetraploid potato reveals a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity (opens in new window)

Author(s): Genevieve Hoopes, Xiaoxi Meng, John P. Hamilton, Sai Reddy Achakkagari, Fernanda de Alves Freitas Guesdes, Marie E. Bolger, Joseph J. Coombs, Danny Esselink, Natalie R. Kaiser, Linda Kodde, Maria Kyriakidou, Brian Lavrijssen, Natascha van Lieshout, Rachel Shereda, Heather K. Tuttle, Brieanne Vaillancourt, Joshua C. Wood, Jan M. de Boer, Nolan Bornowski, Peter Bourke, David Douches, Herman J. van E
Published in: MOLECULAR PLANT, Issue Online ahead of print, 2022, ISSN 1674-2052
Publisher: Oxford University Press
DOI: 10.1016/j.molp.2022.01.003

Intertwined Roles of Reactive Oxygen Species and Salicylic Acid Signaling Are Crucial for the Plant Response to Biotic Stress (opens in new window)

Author(s): Tjaša Lukan and Anna Coll
Published in: Molecular Science, 2022, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23105568

Toward the Design of Potato Tolerant to Abiotic Stress (opens in new window)

Author(s): Raymond Campbell, Laurence J. M. Ducreux, Elena Mellado-Ortega, Robert D. Hancock & Mark A. Taylor
Published in: Solanum tuberosum - Methods and Protocols, 2021, Page(s) pp 387–399, ISBN 978-1-0716-1609-3
Publisher: Humana, New York, NY
DOI: 10.1007/978-1-0716-1609-3_19

Methodologies for Discovery and Quantitative Profiling of sRNAs in Potato (opens in new window)

Author(s): DOBNIK, David, GRUDEN, Kristina, RAMŠAK, Živa, COLL RIUS, Anna
Published in: Methods in molecular biology, Issue 2354, 2021, ISBN 978-1-0716-1609-3
Publisher: Humana Press, cop.
DOI: 10.1007/978-1-0716-1609-3_11

RNA Sequencing Analyses for Deciphering Potato Molecular Responses (opens in new window)

Author(s): Živa Ramšak, Marko Petek & Špela Baebler
Published in: Solanum tuberosum - Methods and Protocols, 2021, Page(s) pp 57–94
Publisher: Humana, New York, NY
DOI: 10.1007/978-1-0716-1609-3_3

ADAPT –Accelerated development of multiple-stress tolerant potato

Author(s): Ribarits A, von Gehren P, Bomers S, Prat N, Tripolt T, Söllinger J
Published in: Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs (Ed), 71. Jahrestagung 2020, 2021, Page(s) 35-36
Publisher: BOKU-University of Natural Resources and Life Sciences

DAP-Seq Identification of Transcription Factor-Binding Sites in Potato (opens in new window)

Author(s): José M. Franco-Zorrilla & Salomé Prat
Published in: Solanum tuberosum - Methods and Protocols, 2021, Page(s) pp 123–142, ISBN 978-1-0716-1609-3
Publisher: Humana, New York, NY
DOI: 10.1007/978-1-0716-1609-3_6

Solanum tuberosum - Methods and Protocols (opens in new window)

Author(s): David Dobnik, Kristina Gruden, Živa Ramšak, Anna Coll
Published in: Solanum tuberosum - Methods and Protocols, 2021, ISBN 978-1-0716-1609-3
Publisher: Humana New York, NY
DOI: 10.1007/978-1-0716-1609-3

Software

pISA-tree

Author(s): Blejec, Andrej; Gruden, Kristina
Publisher: bio.tools

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