Risultati finali Documents, reports (38) Toolkit extension based on first wave demonstrators Apply processes to extend the toolkit addressing additional communities Updated ELIXIR Long-term Sustainability Plan An overview of actions that aim to support the sustainability of bioinformatics resources across ELIXIRs Nodes Retrospective assessment of national use-cases, identification of gaps, and recommendations for future Federated EGA roadmap Retrospective assessment of national usecases identification of gaps and recommendations for future Federated EGA roadmap to facilitate adoption of FEGA by ELIXIR National Nodes and 1MG National Mirror Groups Report on mobilised sequence and variation data Project Handbook 1v0 Initial version of the Project Handbook following Open PM best practices Categorization of the pilot projects Description of the needs in term of DMP of the demonstrator projects and development of a projects categorization from that point of view 1st Report on delivered data management and stewardship courses Report listing the delivered training events related to data management and stewardship encompassing both reruns of existing Node courses as well as delivering of new courses developed in Task 22 A pan-European model for coordinated data management in life sciences Description of an operating model for coordinated Node support to international projects Access to EU tools and project data Systems to capture and maintain user tools and datasets internal and external to EMBLEBIs molecular data resources using the ELIXIR biotools registry and the EMBLEBI BioStudies database Report on the remaining four DMP processes Description on the remaining DMPs constructed taking into consideration the outcomes of the previous experiences Phylogenetic tools and enhanced results visualisation Improved navigation and visualisation tools for systematic processing and analysis including phylogenetic trees Report on operational processes across the federated EGA network and data transfer with the European COVID-19 platform This report will provide details and links to the documentation best practices and SOPs for operating EGA nodes and details of how EGA COVID19 studies can be published in the European COVID19 platform Industry engagement wiki guide for ELIXIR Nodes A continuously updated and communitybuilt guide for Nodes on how to engage with industry Report on the first two DMP process Description of the first two DMPs coconstructed with WP3 including the gap analysis Extended toolkit Harmonized toolkit including expansion with second wave of demonstrators Workshop to explore and plan the inclusion of tools and data from projects that have diverted towards COVID-19 research Workshop to explore and plan inclusion of tools and data from projects that have diverted towards COVID19 research Document where code from the various regional/national data hubs is available; links to analysis tools made available to Data Hubs; training documentation on data submission by the platforms Document where code from the various regionalnational data hubs is available links to analysis tools made available to Data Hubs training documentation on data submission by the platforms Survey of business models Survey of existing business models used to deliver national data management support with gap analysis against identified needs Report on the dedicated training and capacity building activities Report on the training and capacity building activities coconstructed with WP2 Report of use-cases and architecture for the EGA federation A description of the target usecases that will be fulfilled by Federated EGA and how these are met by the proposed network architecture COVID-19 metadata mapping model across COVID-19 studies in federated EGA This report will provide details of the metadata mapping between the COVID19 submissions to Federated EGA nodes to enable cross cohort discovery queries and joint analysis Report on the outreach activities and training activities produced Overview of all data management and stewardship related training and outreach activities that have been undertaken in and for emerging ELIXIR Nodes and Communities Report on the identified training needs and a timeline for training courses Data Management Training roadmap with contents and timeline for DM courses to be developed in ELIXIRCONVERGE Dissemination of the toolkit across the ERA Training and capacity building of all stakeholders Data access points and tools New and enhanced data access points to SARSCoV2 data supporting such operations as full data synchronisation accessibility from external cloud compute and embedding in third party tools Project Handbook 2v0 Update of the Project Handbook including update on the KPIs 2nd Report on delivered data management and stewardship courses Report listing the delivered training events related to data management and stewardship encompassing both reruns of existing Node courses as well as delivering of new courses developed in Task 22 Implementation and documentation to create an operational EGA node The report will include details of the implementation of the Local EGA node outlining the main areas of functionality and include links to public documentation necessary to create deploy and operate the instance Project Handbook final version and lesson learnt Final version of the Project Handbook KPIs and lesson learnt Best practices documents on data standards Report on KPI Report on KPIs developed for WP5 based on demonstrator projects Review of effectiveness of the Node Impact Assessment Toolkit An analysis of the effectiveness of the Impact Assessment Toolkit including outcomes of its application at Nodelevel Assembled starter toolkit Toolkit blueprints for omics and sensitive data assembled Best Practices, version 1 A first version of best practices for data management based upon the early use cases and initial projects Raw sequence data processing workflow in operation Systematic and autonomous processing and analysis of incoming data with preliminary results presentation Report on the ready-to-use training materials for usage and rolling-out in Task 2.3 Report listing all new DM training materials that have been developed and that are findable and reusable via TeSS ELIXIR Best Practices recommendations Final best practice recommendations incorporating use of data brokering business models and panEuropean operations Single entry-point portal for the toolkit for all stakeholders Components of the toolkit integrated into the portal Pubblicazioni Other (49) ELIXIR-CONVERGE D1.2 Survey of business models Autori: Carraro, Marco; Tosatto, Silvio; Jareborg, Niclas; Berka, Karel; Martin, Corinne; d'Anna, Flora; Bösl, Korbinian; Jetten, Mijke; Andrews, Robert; Vergoulis, Thanasis; Arenas Marquez, Juan; Smith, Andrew; Hooft, Rob; Pižemová, Natália; Ahokas, Minna; Silva, Mário; Inno, Heleri; Wittig, Ulrike; Alper, Pinar; Ben-Avraham, Danny; Lieby, Paulette; Gu, Wei Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.6344131 What does FAIR mean to you? Autori: R.W.W. Hooft Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.7323398 ELIXIR-CONVERGE D7.2 Implementation and documentation to create an operational EGA node Autori: Rambla, Jordi; D'Altri, Teresa; Haziza, Frédéric Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4893190 ELIXIR-CONVERGE D4.3 Review of effectiveness of the Node Impact Assessment Toolkit Autori: Martin, Corinne; De Ruyck, Kim; Portugal Melo, Ana; Stansberg, Christine; Alloza, Eva; Anton, Mihail; Balsyte, Erika; Barlow, Mary; Bruno, Chiara; Ben-Avraham, Danny; Battistella, Diana; Blomberg, Niklas; Chasapi, Anastasia; Cook, Martin; Dangles, Marie; De Freitas, Mariana; Delva, Emily; Dubar, Elsa; De Leo, Francesca; Farrell, Gavin; Ferk, Polonca; van Gelder, Celia; Gurwitz, Kim; Harrison, Elai Pubblicato in: 2023 Editore: Zedodo DOI: 10.5281/zenodo.8169303 ELIXIR-CONVERGE D9.2 Document where code from the various regional/national data hubs is available; training documentation on data submission by the platforms - relates to tasks 9.1-9.2 Autori: Neves, Aitana; Dolanski-Aghamanoukjan, Lorenz; Maier, Wolfgang; Pergl, Robert; Akerström, Wolmar Nyberg; Hjerde, Erik; Cuesta, Isabel; Popleteeva, Marina; Oulas, Anastasia; Mohamed, Anliat; Tonazzolli, Arianna; Pilvar, Diana; Calhoun, Erin; Åberg, Espen; Erard, Frédéric; Rasche, Helena; Messak, Imane; van Helden, Jacques; Lara, Maria; Rahman, Nadim; Karathanasis, Nestoras; Willassen, Nils-Pede Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8116380 ELIXIR-CONVERGE D8.5 Data access points and tools Autori: Cochrane, Guy; Cummins, Carla; Rahman, Nadim; Ventouratou, Marianna Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.5938357 ELIXIR-CONVERGE D8.3 Raw sequence data processing workflow in operation Autori: Cochrane, Guy; Rahman, Nadim; Sokolov, Alexey Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.5140396 ELIXIR-CONVERGE D6.4 Project Handbook Final version and lessons learnt Autori: Arenas Marquez, Juan; Coutts, Nikki; Hurst, Hannah Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8183281 ELIXIR-CONVERGE D7.4 Report on operational processes across the federated EGA network and data transfer with the European COVID-19 platform Autori: Hornos Vidal, Albert; Portell Silva, Laura; Capella-Gutierrez, Salvador; Freeberg, Mallory; Curwin, Amy; Rambla, Jordi Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.7274356 Progress on Data Stewardship Wizard during BioHackathon Europe 2020 Autori: Marek Suchánek, Rob Hooft, and Konogan Bourhy Pubblicato in: BioHackrXiv Preprints, 2020 Editore: BioHackrXiv - Centre for Open Science DOI: 10.37044/osf.io/9mnkb Measuring outcomes and impact from the BioHackathon Europe Autori: Leyla Jael Castro, Corinne Martin, Georgi Lazarov, Dana Cernoskova, Terue Takatsuki, Jennifer Harrow, Dietrich Rebholz-Schuhmann Pubblicato in: BioHackrXiv Preprints, 2021 Editore: BioHackrXiv - Centre for Open Science DOI: 10.37044/osf.io/3dxhg ELIXIR-CONVERGE D3.4 Dissemination of the toolkit across the ERA Autori: Alper, Pinar; Popleteeva, Marina; Martin, Corinne; Droesbeke, Bert; Cook, Martin; Westwick, Elaine; Goble, Carole; Coppens, Frederik; van Gelder, Celia; Balsyte, Erika; Tseng, Zippy Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.7858238 ELIXIR-CONVERGE - D1.4 ELIXIR Best Practices recommendations Autori: Berka, Karel; Waheed, Zahra; Mičetić, Ivan; Bösl, Korbinian; D'Anna, Flora; Kallberg, Yvonne; Lieby, Paulette; Buono, Rafael Andrade; Fatima, Nazeefa; Carraro, Marco; Tosatto, Silvio; Persson, Bengt; Vondrášek, Jirí; Jareborg, Niclas Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.7503650 Research Data Management Toolkit (RDMkit): guidelines for plant phenotyping data management and sharing Autori: Erwan Le Floch; Anne-Françoise Adam-Blondon; Isabelle Alic; Bert Droesbeke; Stijn Dhondt; Daniel Faria; Sebastian Beier; Pascal Neveu; Nicolas Francillonne; Célia Michotey; Cyril Pommier Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.7148792 ELIXIR-CONVERGE D8.4 Phylogenetic tools and enhanced results visualisation Autori: O'Cathail, Colman; Sokolov, Alexey; Rahman, Nadim; Cochrane, Guy; Ventouratou, Marianna Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.5140285 ELIXIR-CONVERGE D2.2 Report on the ready-to-use training materials for usage and rolling-out in Task 2.3 Autori: van Gelder, Celia; Leskošek, Brane; Cardona, Alexia; Palagi, Patricia Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8168922 ELIXIR-CONVERGE D9.1 Report on mobilised sequence and variation data - relates to tasks 9.1-9.2 Autori: Cochrane, Guy; Waheed, Zahra; Rahman, Nadim; Ventouratou, Marianna; ELIXIR-CONVERGE Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8116157 Demonstrating public value to funders and other stakeholders—the journey of ELIXIR, a virtual and distributed research infrastructure for life science data Autori: Corinne S. Martin,Susanna Repo,Juan Arenas Márquez,Niklas Blomberg,Katharina B. Lauer,Xènia Pérez Sitjà,Premysl Velek,Ana M. P. Melo,Christine Stansberg,Francesca De Leo,Elina Griniece,Hannes Rothe,Robert Petryszak,Andrew Smith Pubblicato in: Wiley Online Library, Issue Volume 92, Issue 3, 2021 Editore: Wiley DOI: 10.1111/apce.12328 ELIXIR-CONVERGE D1.1 Best Practices 1v0 Autori: Jareborg, Niclas; D'Anna, Flora; Hooft, Rob; B��sl, Korbinian; Kallberg, Yvonne; Faria, Daniel; Dominguez Del Angel, Victoria; Bianchini, Federico; Kronander, Elin; Englund, Marcus; Promponas, Vasilis; Vergoulis, Thanasis; Rossier, Gr��goire; Leiby, Paulette; Adler, Priit; Fuchs, Siiri; Ahokas, Minna; Persson, Bengt; ELIXIR Data Management Network Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4501946 De groeiende rol van digitale gegevens in het onderzoek Autori: Hooft, Rob W.W. Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.6358975 ELIXIR-CONVERGE D5.3 Report on the dedicated training and capacity building activities Autori: Leskošek, Brane; Haurheeram, Vanita; Bianchini, Federico; Alper, Pinar; Portell-Silva, Laura; Åberg, Espen; Hospital, Adam; Popleteeva, Marina; Willassen, Nils P; Vidak, Marko; Adam-Blondon, Anne-Françoise; Collin, Olivier; Curwin, Amy; Freeberg, Mallory; Le Floch, Erwan; Lieby, Paulette; Picardi, Ernesto; Capella-Gutierrez, Salvador Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.7858327 ELIXIR-CONVERGE D5.1 Categorisation of the pilot projects Autori: Adam-Blondon, Anne-Françoise; Alper, Pinar; Capella-Gutierrez, Salvador; Faria, Daniel; Portell Silva, Laura; Hospital, Adam; Willassen, Nils-Peder Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4674491 Unsupervised classification of SARS-CoV-2 genomic sequences uncovers hidden genetic diversity and suggests an efficient strategy for genomic surveillance Autori: Matteo Chiara, David S. Horner, Erika Ferrandi, Carmela Gissi, Graziano Pesole Pubblicato in: bioRXiv Preprints, 2021 Editore: bioRXiv - Cold Spring Harbor Laboratory DOI: 10.1101/2021.06.23.449558 ELIXIR-CONVERGE D2.5 Report on the outreach activities and training activities produced Autori: Palagi, Patricia; Cardona, Alexia; Celia van Gelder; Leskošek, Brane Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8168646 ELIXIR-CONVERGE D5.4 Report on KPI Autori: Adam-Blondon, Anne-Françoise; Portell-Silva, Laura; Capella-Gutierrez, Salvador; Popleteeva, Marina; Jonassen, Inge; Bianchini, Federico; Åberg, Espen; Hospital, Adam; Willassen, Nils-Peder; Sanz, Ferran; Picardi, Ernesto; Alper, Pinar; Ded, Vilém; Djenaba Barry, Nene; d'Altri, Teresa; Vidak, Marco; Martin, Corinne Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8116507 Making Canonical Workflow Building Blocks interoperable across workflow languages Autori: Soiland-Reyes, Stian; Genís Bayarri; Andrio, Pau; Long, Robin; Lowe, Douglas; Niewielska, Ania; Hospital, Adam; Groth, Paul Pubblicato in: Data Intelligence, 2021 Editore: Zenodo DOI: 10.5281/zenodo.4602854 ELIXIR-CONVERGE D3.1 Assembled starter toolkit Autori: Goble, Carole; Alper, Pinar; Droesbeke, Bert; D'Anna, Flora; Andrabi, Munazah; Jetten, Mijke; Coppens, Frederik; Hooft, Rob; Cook, Martin; van Gelder, Celia; Faria, Daniel; Jareborg, Niclas; Englund, Marcus; Kallberg, Yvonne; Wittig, Ulrike; B��sl, Korbinian; Jonassen, Inge; Child, Chris; Collin, Olivier; Bianchini, Federico; Berka, Karel; Perez Sitja, X��nia; Rossier, Gr��goire; Ben-A Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4501634 ELIXIR-CONVERGE D3.3 Single entry-point portal for the toolkit for all stakeholders Autori: Hooft, Rob; D'Anna, Flora; Coppens, Frederik; Droesbeke, Bert Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.7707623 ELIXIR-CONVERGE D5.5 Report on the remaining four DMP processes Autori: Portell-Silva, Laura; Haurheeram, Vanita; Adam-Blondon, Anne-Françoise; Capella-Gutierrez, Salvador; Popleteeva, Marina; Bianchini, Federico; Åberg, Espen; Hooft, Rob; Schuánek, Marek; Slifka, Jan; Hospital, Adam; Willassen, Nils-Peder; Piñero, Janet; Sanz, Ferran; Ramirez-Anguita, Juan Manuel; Pastor, Manuel; Angel Mayer, Miguel; Picardi, Ernesto; Alper, Pinar; Ded, Vilém; Djenaba Barry, Nen Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8142800 Ready for BioData Management? Autori: Ventura-Costa, Carolina; Oliveira, Jorge S.; Paixão, Tiago; Leite, Ricardo; Faria, Daniel; Melo, Ana M. P. Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.7186474 ELIXIR-CONVERGE D5.2 Report on the first two DMP processes Autori: Portell, Laura; Capella-Gutierrez, Salvador; Alper, Pinar; d'Altri, Teresa; Hospital, Adam; Åberg, Espen; Faria, Daniel; Adam-Blondon, Anne-Françoise; Collin, Olivier; Willassen, Nils-Peder; Lieby, Paulette; Oulas, Anastasis; Pafilis, Evangelos; Jareborg, Niclas; Fatima, Nazeefa; Åkerström, Wolmar Nyberg; Picardi, Ernesto Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.5139903 ELIXIR-CONVERGE - D1.3 A pan-European model for data management in life sciences Autori: Vondrášek, Jirí; Berka, Karel; Pižemová, Natália; Jareborg, Niclas; Carraro, Marco; Waheed, Zahra; Mičetić, Ivan; Jetten, Mijke Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.7503690 ELIXIR-CONVERGE D7.5 Retrospective assessment of national use-cases, identification of gaps, and recommendations for future Federated EGA roadmap Autori: Keane, Thomas; Freeberg, Mallory; D'Altri, Teresa; Curwin, Amy Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8116078 ELIXIR-CONVERGE D3.2 Toolkit extension based on first wave demonstrators Autori: Jonassen, Inge; Bösl, Korbinian; Goble, Carole; Alper, Pinar; Droesbeke, Bert; D'Anna, Flora; Faria, Daniel; Andrabi, Munazah; Coppens, Frederik; Cook, Martin; Jareborg, Niclas; Wittig, Ulrike; Portell Silva, Laura; Jetten, Mijke; Hooft, Rob; Bianchini, Federico; van Gelder, Celia; Fuchs, Siiri; Ahokas, Minna; Kallberg, Yvonne; Collin, Olivier; Berka, Karel; Williams, Alan R; Englund, Markus; Car Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.5139897 ELIXIR-CONVERGE D2.1 Report on the identified training needs and a timeline for training courses Autori: Cardona, Alexia; van Gelder, Celia; Palagi, Patrícia; Leskošek, Brane Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4892862 FAIR+E Pathogen data for surveillance and research: lessons from COVID-19 Autori: Neves, Aitana; Cuesta, Isabel; Hjerde, Erik; Salgado, David; van Helden, Jacques; Rahman, Nadim; Fatima, Nazeefa; Karathanasis, Nestoras; Zmora, Pawel; Nyberg Åkerström, Wolmar; Nagaraja Grellscheid, Sushma; Waheed, Zahra; Blomberg, Niklas; ELIXIR CONVERGE WP9 community Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8138316 ELIXIR-CONVERGE D9.3 Best practices documents on data standards - relates to task 9.3 Autori: Monzón Fernández, Sara; Nyberg Åkerström, Wolmar; Lara, María; Cuesta de la Plaza, Isabel; Neves, Aitana; Mohamed, Anliat; Salgado, David; Pilvar, Diana; Inno, Heleri; Messak, Imane; van Helden, Jacques; Willassen, Nils-Peder; Denecker, Thomas; Pergl, Robert; Suchánek, Marek Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8177166 ELIXIR-CONVERGE D7.1 Report of use-cases and architecture for the EGA federation Autori: Keane, Thomas; Freeberg, Mallory; Kerry, Giselle; Rambla, Jordi; Morello, Francesca; Eufinger, Jan; Gu, Wei Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4893063 ELIXIR-CONVERGE D4.1 Industry engagement WIKI guide for ELIXIR Nodes Autori: Sousoni, Despoina; Lauer, Katharina; Martin, Corinne; Haskell, Erin; Perez Sitja, Xènia; Westwick, Elaine; Tseng, Zippy; Cernoskova, Dana; Balzano, Melissa; Portugal Melo, Ana; de Leo, Francesca; de Ruyck, Kim; Maisinger, Klaus; Smith, Andrew Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.6822169 ELIXIR-CONVERGE: D2.3 - 1st Report on delivered data management and stewardship courses Autori: Leskošek, Brane; Cardona, Alexia; van Gelder, Celia; Palagi, Patricia; WP2 Members Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.6642066 ELIXIR-CONVERGE D7.3 COVID-19 metadata mapping model across COVID-19 studies in federated EGA Autori: Morello, Francesca; Lehväslaiho, Heikki; Lappalainen, Ilkka; Rambla, Jordi Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4893221 ELIXIR-CONVERGE: Annex 1 to Deliverable D5.1 - User Stories_v1 Autori: Adam-Blondon, Anne-Françoise; Alper, Pinar; Capella-Gutierrez, Salvador; Faria, Daniel; Portell Silva, Laura; Hospital, Adam; Willassen, Nils-Peder Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4672569 ELIXIR-CONVERGE D3.5 Extended toolkit Autori: Coppens, Frederik; D'Anna, Flora; Droesbeke, Bert; Fatima, Nazeefa; Goble, Carole; Jareborg, Niclas; Hooft, Rob; Suchánek, Marek; Pergl, Robert Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8144240 ELIXIR-CONVERGE D6.3 Project Handbook 2v0 Autori: Arenas Marquez, Juan; Coutts, Nikki; Hurst, Hannah; Wingender, Joana Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.5146094 ELIXIR-CONVERGE D4.2 Updated ELIXIR Long-term Sustainability Plan Autori: Smith, Andrew; Martin, Corinne; Balsyte, Erika; Sousoni, Despoina Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8116122 ELIXIR-CONVERGE D6.1 Project Handbook 1v0 Autori: Hurst, Hannah; Arenas Marquez, Juan; Coutts, Nikki Pubblicato in: 2020 Editore: Zenodo DOI: 10.5281/zenodo.3855685 ELIXIR-CONVERGE D8.2 Workshop to explore and plan the inclusion of tools and data from projects that have diverted towards COVID-19 research Autori: Rinck, Gabriele; Cochrane, Guy; Ventouratou, Marianna Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4722885 ELIXIR-CONVERGE D2.4 2nd Report on delivered data management and stewardship courses Autori: Leskošek, Brane; Cardona, Alexia; van Gelder, Celia; Palagi, Patricia Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8186990 Workshop on data management and data deposition for biological images Autori: Tatiana Woller; Alexander Botzki; Sebastian Munck Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.7193957 Conference proceedings (15) Data Stewardship Wizard: Selecting suitable FAIR practices early in a project. Autori: Hooft, Rob Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.7502201 ELIXIR-CONVERGE - PILOT USE OF THE ELIXIR PROJECT MONITORING TOOL BY ELIXIR-PORTUGAL Autori: Santos, Rafael; Melo, Ana Portugal; Arenas Marquez, Juan; Hurst, Hannah; Coutts, Nikki Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4522175 The Portuguese experience in enabling interoperability frameworks for scientific data Autori: Melo, Ana M. P. Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4916620 Data Stewardship Wizard: philosophy and Implementation Autori: Rob W.W. Hooft Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.6010328 Metabolomics and Integrative Omics: from data production to analysis Autori: Leonardo Tenori; Lars Ove Dragsted; Stefania Savoi; Igor Fochi; Pietro Franceschi; Duccio Cavalieri; Christoph Steinbeck; Veronica Ghini; Danilo Porro; Anna Maria Timperio; Bruno Fosso; Fabrizio Mastrorocco; Daniela Gaglio; Giuseppina Fanelli; Sergio Giannattasio; Clara Musicco Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.6522068 Flanders Bio Imaging – towards efficient centralized research data management and analysis of bioimaging data Autori: Munck, Sebastian; Christopher Cawthorne; Tatiana Woller; Benjamin Pavie; Alexander Botzki; Frank Vernaillen; Raf De Coster; Paul Borgermans; Ingrid Barcena Roig; Mariana Montes Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.7990100 The landscape of FAIR and Open Science in Portugal and Beyond Autori: Eloy Rodrigues Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.6560879 Fellowship of the Data — RDM Trainer Network Meeting 2023: Presentations Autori: Wilbrandt, Jeanne; Biernacka, Katarzyna; Lübke, Nils-Christian; Schnitzer, Helena; Wibberg, Daniel; Frisch, Katrin Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8117453 Research Data Management in Life Sciences: Preserve, publish and share your data Autori: Botzki, Alexander Pubblicato in: 2020 Editore: Zenodo DOI: 10.5281/zenodo.4322967 The Portuguese Local European Genome-Phenome Archive (EGA) Autori: Jorge S. Oliveira; Fernando Mira da Silva; José Luís Oliveira; Mário Silva; Ana M. P. Melo Pubblicato in: 2022 Editore: Zenodo DOI: 10.5281/zenodo.7186541 Building Research Data Management (RDM) expertise and training resources in ELIXIR Nodes Autori: Celia W.G. van Gelder; Patricia Palagi; Alexia Cardona; Brane Leskošek Pubblicato in: 2023 Editore: Zenodo DOI: 10.5281/zenodo.8348286 First steps on a FAIR Journey Autori: Hooft, Rob W.W. Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.5679792 First Steps in making your data FAIR Autori: Hooft, Rob Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.5769649 Testing the Application of ELIXIR Plant Standards in the Industry Autori: Melo, Ana M. P.; Faria, Daniel Pubblicato in: 2021 Editore: Zenodo DOI: 10.5281/zenodo.4916544 Research Data Management in Life Sciences: Re-using existing data Autori: Botzki, Alexander Pubblicato in: 2020 Editore: Zenodo DOI: 10.5281/zenodo.4322980 Peer reviewed articles (12) Involvement of the Catecholamine Pathway in Glioblastoma Development Autori: Zoltán Kraboth; Bela Kajtár; Bence Gálik; Attila Gyenesei; Attila Miseta; Bernadette Kalman Pubblicato in: Cells, Issue 2021 Mar; 10(3): 549., 2021, ISSN 2073-4409 Editore: Europe PMC DOI: 10.3390/cells10030549 The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing Autori: Peter W Harrison, Rodrigo Lopez, Nadim Rahman, Stefan Gutnick Allen, Raheela Aslam, Nicola Buso, Carla Cummins, Yasmin Fathy, Eloy Felix, Mihai Glont, Suran Jayathilaka, Sandeep Kadam, Manish Kumar, Katharina B Lauer, Geetika Malhotra, Abayomi Mosaku, Ossama Edbali, Young Mi Park, Andrew Parton, Matt Pearce, Jose Francisco Estrada Pena, Joseph Rossetto, Craig Russell, Sandeep Selvakumar, Xènia P Pubblicato in: Nucleic Acids Research, Issue Volume 49, Issue W1, 2021, Page(s) 619-623, ISSN 1362-4962 Editore: Oxford University Press DOI: 10.1093/nar/gkab417 CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes Autori: Matteo Chiara, Federico Zambelli, Marco Antonio Tangaro, Pietro Mandreoli, David S Horner, Graziano Pesole Pubblicato in: Bioinformatics, Issue Volume 36, Issue 22-23, 2020, Page(s) 5522-5523, ISSN 1460-2059 Editore: Oxford University Press DOI: 10.1093/bioinformatics/btaa1047 The European Bioinformatics Institute: empowering cooperation in response to a global health crisis Autori: Gaia Cantelli, Guy Cochrane, Cath Brooksbank, Ellen McDonagh, Paul Flicek, Johanna McEntyre, Ewan Birney, Rolf Apweiler Pubblicato in: Nucleic Acids Research, Issue Volume 49, Issue D1, 2021, Page(s) 29-37, ISSN 1362-4962 Editore: Oxford University Press DOI: 10.1093/nar/gkaa1077 Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities Autori: Matteo Chiara, Anna Maria D’Erchia, Carmela Gissi, Caterina Manzari, Antonio Parisi, Nicoletta Resta, Federico Zambelli, Ernesto Picardi, Giulio Pavesi, David S Horner, Graziano Pesole Pubblicato in: Briefings in Bioinformatics, Issue Volume 22, Issue 2, 2021, Page(s) 616-630, ISSN 1477-4054 Editore: Oxford University Press DOI: 10.1093/bib/bbaa297 The European Nucleotide Archive in 2020. Autori: Peter W. Harrison; Alisha Ahamed; Raheela Aslam; Blaise T. F. Alako; Josephine Burgin; Nicola Buso; Mélanie Courtot; Jun Fan; Dipayan Gupta; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Manish Kumar; Rodrigo Lopez; Simon Kay; Rasko Leinonen; Xin Liu; Colman O’Cathail; Amir Pakseresht; Youngmi Park; Stephane Pesant; Nadim Ra Pubblicato in: Nucleic Acids Research, Issue 21, 2021, Page(s) D82-D85, ISSN 1362-4962 Editore: Oxford University Press DOI: 10.1093/nar/gkaa1028 Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient Survival Autori: Loucera, Carlos; Perez-Florido, Javier; Casimiro-Soriguer, Carlos S; Ortuño, Francisco M; Carmona, Rosario; Bostelmann, Gerrit; Martínez-González, L Javier; Muñoyerro-Muñiz, Dolores; Villegas, Román; Rodriguez-Baño, Jesus; Romero-Gomez, Manuel; Lorusso, Nicola; Garcia-León, Javier; Navarro-Marí, Jose M; Camacho-Martinez, Pedro; Merino-Diaz, Laura; Salazar, Adolfo de; Viñuela, Laura; The Pubblicato in: Viruses; Volume 14; Issue 9; Pages: 1893, Issue 1, 2022, ISSN 1999-4915 Editore: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v14091893 Comparative Genomics Reveals Early Emergence and Biased Spatiotemporal Distribution of SARS-CoV-2 Autori: Matteo Chiara, David S Horner, Carmela Gissi, Graziano Pesole Pubblicato in: Molecular Biology and Evolution, Issue Volume 38, Issue 6, 2021, Page(s) 2547-2565, ISSN 1537-1719 Editore: Oxford University Press DOI: 10.1093/molbev/msab049 Connecting data, tools and people across Europe: ELIXIR’s response to the COVID-19 pandemic Autori: Niklas Blomberg; Katharina B. Lauer Pubblicato in: European Journal of Human Genetics, Issue 28, 2021, Page(s) 718-723, ISSN 1476-5438 Editore: Springer Nature DOI: 10.1038/s41431-020-0637-5 REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments Autori: Luigi Mansi, Marco Antonio Tangaro, Claudio Lo Giudice, Tiziano Flati, Eli Kopel, Amos Avraham Schaffer, Tiziana Castrignanò, Giovanni Chillemi, Graziano Pesole, Ernesto Picardi Pubblicato in: Nucleic Acids Research, Issue Volume 49, Issue D1, 2021, Page(s) 1012-1019, ISSN 1362-4962 Editore: Oxford University Press DOI: 10.1093/nar/gkaa916 The road to success: drawing parallels between 'road' and 'research data' infrastructures to foster understanding between service providers, funders and policymakers Autori: Corinne Martin; Rob Hooft Pubblicato in: F1000Research, Issue 1, 2023, ISSN 2046-1402 Editore: F1000 Research Ltd. DOI: 10.12688/f1000research.128167.2 DNA CpG methylation in sequential glioblastoma specimens Autori: Zoltan Kraboth; Bence Galik; Marton Tompa; Bela Kajtar; Peter Urban; Attila Gyenesei; Attila Miseta; Bernadette Kalman Pubblicato in: Journal of Cancer Research and Clinical Oncology, 2020, ISSN 1432-1335 Editore: Springer DOI: 10.1007/s00432-020-03349-w È in corso la ricerca di dati su OpenAIRE... Si è verificato un errore durante la ricerca dei dati su OpenAIRE Nessun risultato disponibile
