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DevelOpmeNt of Cancer RNA TherapEutics

Deliverables

Developing a morphology-based RNAi-screening assay for the detection of EMT or MET

External server set up and access for all RISE-cONCReTE participants

Characterizing the roles of ncRNAs involved in EMT

Methods for the identification of non-coding RNA modulated by histone modification

colon and breast cancer cell lines are used

Methods for identification of RNA binders

Identify the molecular map of RNA binders and ncRNAs and identify new target for personalized cancer therapies Characterize the role in tumor cell biology of the identified RNA binders ncRNAs

ncRNAs involved in hypoxia and, CAIX in glioma

Characterize the relationship between ncRNAs, hypoxia and, CAIX in glioma and identification of a non-coding RNA signatures. Characterize the role of ncRNAs regulating hypoxia cascade in tumor cell biology

Content for network wide events approved by Director of TOK

Appointment of Project Monitor

Identification of ncRNAs implicated in exosome-mediated tumor/stroma communication

Identification of non coding RNA loci modulated by DNA methylation that could represent novel therapeutical target

two sources of human malignancies are used cancer cell lines and primary tumors

Gender equality monitoring

Publications

miR-216a Acts as a Negative Regulator of Breast Cancer by Modulating Stemness Properties and Tumor Microenvironment

Author(s): Giuseppina Roscigno, Assunta Cirella, Alessandra Affinito, Cristina Quintavalle, Iolanda Scognamiglio, Francesco Palma, Francesco Ingenito, Silvia Nuzzo, Francesca De Micco, Antonio Cuccuru, Renato Thomas, Gerolama Condorelli
Published in: International Journal of Molecular Sciences, Issue 21/7, 2020, Page(s) 2313, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21072313

Practical tips and new trends in electrochemical biosensing of cancer-related extracellular vesicles

Author(s): Patrick Severin Sfragano, Serena Pillozzi, Gerolama Condorelli, Ilaria Palchetti
Published in: Analytical and bioanalytical chemistry., 2023, Page(s) 1-20, ISSN 1618-2650
Publisher: Springer
DOI: 10.1007/s00216-023-04530-z

Exploiting the Natural Properties of Extracellular Vesicles in Targeted Delivery towards Specific Cells and Tissues

Author(s): Pablo Lara, Alan B. Chan, Luis J. Cruz, Andrew F. G. Quest, Marcelo J. Kogan
Published in: Pharmaceutics, Issue 12/11, 2020, Page(s) 1022, ISSN 1999-4923
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics12111022

Urinary Dickkopf-3 and Contrast-Associated Kidney Damage

Author(s): Giuseppina Roscigno, Cristina Quintavalle, Giuseppe Biondi-Zoccai, Francesca De Micco, Giacomo Frati, Alessandra Affinito, Silvia Nuzzo, Gerolama Condorelli, Carlo Briguori
Published in: Journal of the American College of Cardiology, Issue 77/21, 2021, Page(s) 2667-2676, ISSN 0735-1097
Publisher: Elsevier BV
DOI: 10.1016/j.jacc.2021.03.330

IL-6/STAT3 signaling in tumor cells restricts the expression of frameshift-derived neoantigens by SMG1 induction

Author(s): Daniel Meraviglia-Crivelli; Helena Villanueva; Angelina Zheleva; María Villalba-Esparza; Beatriz Moreno; Ashwathi Puravankara Menon; Alfonso Calvo; Javier Cebollero; Martin Barainka; Igor Ruiz de los Mozos; Carlos Huesa-Berral; Fernando Pastor
Published in: Molecular Cancer,, Issue 12, 2022, Page(s) Vol 21, Iss 1, Pp 1-24, ISSN 1476-4598
Publisher: BioMed Central
DOI: 10.1186/s12943-022-01679-6

Zinc-Phthalocyanine-Loaded Extracellular Vesicles Increase Efficacy and Selectivity of Photodynamic Therapy in Co-Culture and Preclinical Models of Colon Cancer

Author(s): Pablo Lara, Ruben V. Huis in ‘t Veld, Carla Jorquera-Cordero, Alan B. Chan, Ferry Ossendorp, Luis J. Cruz
Published in: Pharmaceutics, Issue 13/10, 2021, Page(s) 1547, ISSN 1999-4923
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics13101547

Overview and Future Perspectives on Tumor-Targeted Positron Emission Tomography and Fluorescence Imaging of Pancreatic Cancer in the Era of Neoadjuvant Therapy

Author(s): Martijn A. van Dam; Floris A. Vuijk; Judith A. Stibbe; Ruben D. Houvast; Saskia A. C. Luelmo; Stijn Crobach; Shirin Shahbazi Feshtali; Lioe-Fee de Geus-Oei; Bert A. Bonsing; Cornelis F. M. Sier; Peter J. K. Kuppen; Rutger-Jan Swijnenburg; Albert D. Windhorst; Jacobus Burggraaf; Alexander L. Vahrmeijer; J. Sven D. Mieog
Published in: Cancers, Issue 13, 2021, Page(s) 13(23), ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers13236088

Effect of the Addition of Alginate and/or Tetracycline on Brushite Cement Properties

Author(s): Claudia Morilla, Elianis Perdomo, Ana Karla Hernández, Ramcy Regalado, Amisel Almirall, Gastón Fuentes, Yaima Campos Mora, Timo Schomann, Alan Chan, Luis J. Cruz
Published in: Molecules, Issue 26/11, 2021, Page(s) 3272, ISSN 1420-3049
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules26113272

Introducing Fluorescence-Guided Surgery for Pediatric Ewing, Osteo-, and Rhabdomyosarcomas: A Literature Review

Author(s): Rijs, Z.; Jeremiasse, B.; Shifai, N.; Gelderblom, H.; Sier, C.F.M.; Vahrmeijer, A.L.; Leeuwen, F.W.B. van; Steeg, A.F.W. van der; Sande, M.A.J. van de
Published in: Biomedicines, Issue 9, 2021, Page(s) VOLUME=9;ISSUE=10, ISSN 2227-9059
Publisher: MDPI
DOI: 10.3390/biomedicines9101388

Extracellular Vesicles from M1-Polarized Macrophages Combined with Hyaluronic Acid and a β-Blocker Potentiate Doxorubicin’s Antitumor Activity by Downregulating Tumor-Associated Macrophages in Breast Cancer

Author(s): Carla Jorquera-Cordero, Pablo Lara , Luis J Cruz , Timo Schomann , Anna van Hofslot, Thaís Gomes de Carvalho , Paulo Marcos Da Matta Guedes, Laura Creemers, Roman I Koning, Alan B Chan, Raimundo Fernandes de Araujo Junior
Published in: Pharmaceutics, Issue 14(5), 2022, Page(s) 1068, ISSN 1999-4923
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14051068

Exosomal microRNAs synergistically trigger stromal fibroblasts in breast cancer

Author(s): Iolanda Scognamiglio, Lorenza Cocca, Ilaria Puoti, Francesco Palma, Francesco Ingenito, Cristina Quintavalle, Alessandra Affinito, Giuseppina Roscigno, Silvia Nuzzo, Rosario Vincenzo Chianese, Stefania Belli, Guglielmo Thomas, Timo Schomann, Alan Chan, Maria Patrizia Stoppelli, Gerolama Condorelli
Published in: Molecular therapy. Nucleic acids, Issue vol. 28, 2022, Page(s) 17-31, ISSN 2162-2531
Publisher: Nature Publishing Group
DOI: 10.1016/j.omtn.2022.02.013

Chemical, Antioxidant, and Antimicrobial Properties of the Peel and Male Flower By-Products of Four Varieties of Punica granatum L. Cultivated in the Marche Region for Their Use in Cosmetic Products

Author(s): Maria Rosa Gigliobianco; Manuela Cortese; Samanta Nannini; Lucrezia Di Nicolantonio; Dolores Vargas Peregrina; Giulio Lupidi; Luca Agostino Vitali; Elena Bocchietto; Piera Di Martino; Roberta Censi
Published in: Antioxidants, Issue 11, 2022, Page(s) 768, ISSN 2076-3921
Publisher: Basel, Switzerland
DOI: 10.3390/antiox11040768

Prognostic and Clinicopathological Significance of MiR-155 in Breast Cancer: A Systematic Review

Author(s): Anna Maria Grimaldi, Silvia Nuzzo, Gerolama Condorelli, Marco Salvatore, Mariarosaria Incoronato
Published in: International Journal of Molecular Sciences, Issue 21/16, 2020, Page(s) 5834, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21165834

Ethical implications of epigenetics in the eraof personalized medicine

Author(s): Josep Santaló1 and María Berdasco2,3*
Published in: Clinical Epigenetics, Issue 14:44, 2022, ISSN 1868-7083
Publisher: BioMed Central
DOI: 10.1186/s13148-022-01263-1

Antifouling Strategies of Nanoparticles for Diagnostic and Therapeutic Application: A Systematic Review of the Literature.

Author(s): Paolo Bevilacqua; Silvia Nuzzo; Enza Torino; Gerolama Condorelli; Marco Salvatore; Anna Maria Grimaldi
Published in: Nanomaterials, Issue 11, 2021, Page(s) 11(3), 780, ISSN 2079-4991
Publisher: MDPI
DOI: 10.3390/nano11030780

The Incorporation of Etanercept into a Porous Tri-Layer Scaffold for Restoring and Repairing Cartilage Tissue

Author(s): Campos, Yaima; Fuentes, Gastón; Almirall, Amisel; Que, Ivo; Schomann, Timo; Chung, Chih Kit; Jorquera Cordero, Carla; Quintanilla Sierra, Luis; Rodríguez Cabello, José Carlos; Chan, Alan; Cruz, Luis
Published in: Pharmaceutics, Issue 1, 2022, ISSN 1999-4923
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14020282

Selection of RNA aptamers targeting hypoxia in cancer

Author(s): Nuzzo S, Iaboni M, Ibba ML, Rienzo A, Musumeci D, Franzese M, Roscigno G, Affinito A, Petrillo G, Quintavalle C, Ciccone G, Esposito CL, Catuogno S
Published in: Frontiers in molecular biosciences, Issue 2296889X, 2022, ISSN 2296-889X
Publisher: Lausanne : Frontiers Media S.A
DOI: 10.3389/fmolb.2022.956935

Gastric Ulcer Healing Property of Bryophyllum pinnatum Leaf Extract in Chronic Model In Vivo and Gastroprotective Activity of Its Major Flavonoid

Author(s): Edilane Rodrigues Dantas De Araújo; Gerlane Coelho Bernardo Guerra; Anderson Wilbur Lopes Andrade; Júlia Morais Fernandes; Valéria Costa Da Silva; Emanuella De Aragão Tavares; Aurigena Antunes De Araújo; Raimundo Fernandes de Araújo Júnior; Raimundo Fernandes de Araújo Júnior; Raimundo Fernandes de Araújo Júnior; Raimundo Fernandes de Araújo Júnior; Silvana Maria Zucolotto; Silvana Ma
Published in: Frontiers in Pharmacology, Issue 12, 2021, Page(s) Vol 12, ISSN 1663-9812
Publisher: Frontiers Media S.A.
DOI: 10.3389/fphar.2021.744192

Interfering with the Tumor-Immune Interface: Making Way for Triazine-Based Small Molecules as Novel PD-L1 Inhibitors

Author(s): Pasquale Russomanno; Giulia Assoni; Giulia Assoni; Jussara Amato; Vincenzo Maria D'Amore; Riccardo Scaglia; Diego Brancaccio; Martina Pedrini; Giovanna Polcaro; Valeria La Pietra; Paolo Orlando; Marianna Falzoni; Linda Cerofolini; Stefano Giuntini; Marco Fragai; Bruno Pagano; Greta Donati; E. Novellino; Cristina Quintavalle; Gerolama Condorelli; Francesco Sabbatino; Pierfausto Seneci; Daniela Aros
Published in: J. Med. Chem. 2021, 64, 16020−16045, Issue 1, 2021, ISSN 1520-4804
Publisher: American Chemical Society
DOI: 10.1021/acs.jmedchem.1c01409

The Role of RNA and DNA Aptamers in Glioblastoma Diagnosis and Therapy: A Systematic Review of the Literature

Author(s): Silvia Nuzzo, Valentina Brancato, Alessandra Affinito, Marco Salvatore, Carlo Cavaliere, Gerolama Condorelli
Published in: Cancers, Issue 12/8, 2020, Page(s) 2173, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers12082173

Analysis of Differentially Expressed Genes, MMP3 and TESC, and Their Potential Value in Molecular Pathways in Colon Adenocarcinoma: A Bioinformatics Approach

Author(s): Constantin Busuioc; Andreea Nutu; Cornelia Braicu; Oana Zanoaga; Monica Trif; Ioana Berindan-Neagoe
Published in: BioMedInformatics, Issue 12, 2022, Page(s) 474-491, ISSN 2673-7426
Publisher: MDPI
DOI: 10.3390/biomedinformatics2030030

Combined Targeting of Glioblastoma Stem-Like Cells by Neutralizing RNA-Bio-Drugs for STAT3

Author(s): Carla Lucia Esposito, Silvia Nuzzo, Maria Luigia Ibba,Lucia Ricci-Vitiani, Roberto Pallini, Gerolama Condorelli,Silvia Catuogno, Vittorio de Franciscis
Published in: Cancers, Issue 12(6), 2020, Page(s) 1434, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers12061434

Combinatorial therapeutic approaches of photodynamic therapy and immune checkpoint blockade for colon cancer treatment

Author(s): Yang Hao, Chih Kit Chung, Zili Gu, Timo Schomann, Xiaoxu Dong, Ruben V Huis In 't Veld, Marcel G M Camps, Peter Ten Dijke, Ferry A Ossendorp, Luis J Cruz
Published in: Molecular biomedicine, 2022, ISSN 2662-8651
Publisher: Singapore : Springer Singapore, [2020]-
DOI: 10.1186/s43556-022-00086-z

Functionalized Nanoparticles Targeting Tumor-Associated Macrophages as Cancer Therapy.

Author(s): Yuanyuan He; Raimundo Fernandes de Araújo Júnior; Luis J. Cruz; Christina Eich
Published in: Pharmaceutics,, Issue 13(10), 2021, Page(s) 70, ISSN 2078-2489
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics13101670

Identification of a novel RNA aptamer that selectively targets breast cancer exosomes

Author(s): Carla Lucia Esposito, Cristina Quintavalle, Francesco Ingenito, Deborah Rotoli, Giuseppina Roscigno, Silvia Nuzzo, Renato Thomas, Silvia Catuogno, Vittorio de Franciscis, Gerolama Condorelli
Published in: Molecular Therapy - Nucleic Acids, 2021, ISSN 2162-2531
Publisher: Nature Publishing Group
DOI: 10.1016/j.omtn.2021.01.012

miR-34c-3p targets CDK1 a synthetic lethality partner of KRAS in non-small cell lung cancer

Author(s): Francesco Palma, Alessandra Affinito, Silvia Nuzzo, Giuseppina Roscigno, Iolanda Scognamiglio, Francesco Ingenito, Lola Martinez, Monica Franzese, Mario Zanfardino, Andrea Soricelli, Alfonso Fiorelli, Gerolama Condorelli, Cristina Quintavalle
Published in: Cancer Gene Therapy, 2020, ISSN 0929-1903
Publisher: Nature Publishing Group
DOI: 10.1038/s41417-020-00224-1

STAT3 silencing by an aptamer-based strategy hampers the crosstalk between NSCLC cells and cancer-associated fibroblasts

Author(s): Maria L. Ibba,Giuseppe Ciccone,Deborah Rotoli,Gabriele Coppola,Alfonso Fiorelli, Silvia Catuogno,Carla L. Esposito
Published in: Molecular therapy nucleic acid, Issue 32, 2023, Page(s) 111–126., ISSN 2162-2531
Publisher: Nature Publishing Group
DOI: 10.1016/j.omtn.2023.03.003

Evaluation of EphB4 as Target for Image-Guided Surgery of Breast Cancer

Author(s): Cansu de Muijnck, Yoren van Gorkom, Maurice van Duijvenvoorde, Mina Eghtesadi, Geeske Dekker-Ensink, Shadhvi S. Bhairosingh, Alessandra Affinito, Peter J. K. Kuppen, Alexander L. Vahrmeijer, Cornelis F. M. Sier
Published in: Pharmaceuticals, Issue 13/8, 2020, Page(s) 172, ISSN 1424-8247
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ph13080172

Nanocarriers as a Tool for the Treatment of Colorectal Cancer

Author(s): Ana Luiza C. de S. L. Oliveira, Timo Schomann, Lioe-Fee de Geus-Oei, Ellen Kapiteijn, Luis J. Cruz, Raimundo Fernandes de Araújo Junior
Published in: Pharmaceutics, Issue 13/8, 2021, Page(s) 1321, ISSN 1999-4923
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics13081321

Smart Polymeric Micelles for Anticancer Hydrophobic Drugs

Author(s): Guzmán Rodríguez A, Sablón Carrazana M, Rodríguez Tanty C, Malessy MJA, Fuentes G, Cruz LJ.
Published in: Cancers (Basel), 2022, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers15010004

Comparative Proteomic Profiling of Secreted Extracellular Vesicles from Breast Fibroadenoma and Malignant Lesions: A Pilot Study

Author(s): Katia Pane, Cristina Quintavalle, Silvia Nuzzo, Francesco Ingenito, Giuseppina Roscigno, Alessandra Affinito, Iolanda Scognamiglio, Birlipta Pattanayak, Enrico Gallo, Antonella Accardo, Guglielmo Thomas, Zoran Minic, Maxim V Berezovski, Monica Franzese, Gerolama Condorelli
Published in: International journal of molecular sciences, Issue vol. 23, 2022, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23073989

Thermosensitive Injectable Hydrogels for Intra-Articular Delivery of Etanercept for the Treatment of Osteoarthritis

Author(s): Jomarien García-Couce, Timo Schomann, Chih Kit Chung, Ivo Que, Carla Jorquera-Cordero, Gastón Fuentes, Amisel Almirall, Alan Chan, Luis J Cruz
Published in: Gels, Issue Quarterly, 2022, ISSN 2310-2861
Publisher: Basel, Switzerland : MDPI AG, [2015]-
DOI: 10.3390/gels8080488

Immunohistochemical Evaluation of Candidate Biomarkers for Fluorescence-Guided Surgery of Myxofibrosarcoma Using an Objective Scoring Method

Author(s): Zeger Rijs; Esther Belt; Gijsbert M. Kalisvaart; Cornelis F. M. Sier; Peter J. K. Kuppen; Arjen H. G. Cleven; Alexander L. Vahrmeijer; Michiel A. J. van de Sande; Pieter B. A. A. van Driel
Published in: Biomedicines,, Issue 13, 2023, Page(s) Vol 11, Iss 3, p 982, ISSN 2227-9059
Publisher: MDPI
DOI: 10.3390/biomedicines11030982

Impact of the Interactions between Fragrances and Cosmetic Bases on the Fragrance Olfactory Performance: A Tentative to Correlate SPME-GC/MS Analysis with That of an Experienced Perfumer

Author(s): Lucrezia Di Nicolantonio; Maria Rosa Gigliobianco; Dolores Vargas Peregrina; Simone Angeloni; Luca Ilorini; Piera Di Martino; Roberta Censi
Published in: Cosmetics, Issue 9(4), 2022, Page(s) 70, ISSN 2079-9284
Publisher: MDPI
DOI: 10.3390/cosmetics9040070

The Role of Non-Coding RNAs in Epigenetic Dysregulation in Glioblastoma Development

Author(s): Ekaterina Isachesku, Cornelia Braicu,Radu Pirlog,Anja Kocijancic,Constantin Busuioc,Lavinia-Lorena Pruteanu,Deo Prakash Pandey, Ioana Berindan-Neagoe
Published in: Int J Mol Sci, Issue 24(22), 2023, Page(s) 16320, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms242216320

Bacterial Cellulose as Drug Delivery System for Optimizing Release of Immune Checkpoint Blocking Antibodies

Author(s): Chih Kit Chung; Uwe Beekmann; Dana Kralisch; Katja Bierau; Alan Chan; Ferry Ossendorp; Luis J. Cruz
Published in: Pharmaceutics, Issue 14, 2022, Page(s) 1351, ISSN 1999-4923
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14071351

Cell-Based Tracers as Trojan Horses for Image-Guided Surgery

Author(s): Vincent Q. Sier, Margreet R. de Vries, Joost R. van der Vorst, Alexander L. Vahrmeijer, Cornelis van Kooten, Luis J. Cruz, Lioe-Fee de Geus-Oei, Valerie Ferreira, Cornelis F. M. Sier, Frauke Alves, Munitta Muthana
Published in: International Journal of Molecular Sciences, Issue 22/2, 2021, Page(s) 755, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22020755

Modulating the Crosstalk between the Tumor and the Microenvironment Using SiRNA: A Flexible Strategy for Breast Cancer Treatment

Author(s): Giuseppina Roscigno, Iolanda Scognamiglio, Francesco Ingenito, Rosario Vincenzo Chianese, Francesco Palma, Alan Chan, Gerolama Condorelli
Published in: Cancers, Issue 12/12, 2020, Page(s) 3744, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers12123744

Combinatorial Therapeutic Approaches with Nanomaterial-Based Photodynamic Cancer Therapy

Author(s): Hao, Y.; Chung, C.K.; Yu, Z.F.; Veld, R.H.I.V. 't; Ossendorp, F.A.; Dijke, P. ten; Cruz, L.J.
Published in: Pharmaceutics, Issue 14 (1), 2022, Page(s) 120, ISSN 2078-2489
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14010120

Structure‐ and Interaction‐Based Design of Anti‐SARS‐CoV‐2 Aptamers

Author(s): Mironov V, Shchugoreva IA, Artyushenko PV, Morozov D, Borbone N, Oliviero G, Zamay TN, Moryachkov RV, Kolovskaya OS, Lukyanenko KA, Song Y, Merkuleva IA, Zabluda VN, Peters G, Koroleva LS, Veprintsev DV, Glazyrin YE, Volosnikova EA, Belenkaya SV, Esina TI, Isaeva AA, Nesmeyanova VS, Shanshin DV, Berlina AN, Komova NS, Svetlichnyi VA, Silnikov VN, Shcherbakov DN, Zamay GS, Zamay SS, Smolyarova T, T
Published in: Chemistry, Issue vol 28, 2022, ISSN 0947-6539
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/chem.202104481

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