Human Exposome Assessment Platform

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Sensor pilot Documentation

Prior to the enrollment of the first subject, we will submit (i) Final version of study protocol as submitted to regulators/ethics committee(s), (ii) Registration number of clinical study in a WHO-or ICMJE- approved registry (with the possibility to post results), (iii) Approvals (ethics committees and national competent authority if applicable) required for invitation/enrolment of first subject in at least one clinical centre.

Exposure DNAme signatures

A list of CpGs which collectively change as a function of exposure to a specific conditionfactor and which can be used to define an index eg smokingindex will be provided

List of Working Groups and ToR for the WGs - EXPANSE/HEAP

A first set of working groups will be made and Term of Reference for the WGs will be specified including the selection of work group leaders coleads and members

Reference architecture

Document describing the reference architecture for Information Commons and technical requirements.

Secure platform and recruitment

Recruitment using secure electronic customer receipts analysis platform commenced Plan to recruit 10000 individuals

Report on secure data platform

Documentation of the secure data platform and its integration into HEAP.

Ageing DNAme signatures

A list of CpGs which collectively change as a function of age eg general age signature stem cell polycombgroup target signature replicative age etc will be provided

Report on databases mapped

Report on databases mapped and how they contribute to the proper implementation of the GDPR and national legislation. Databases are mapped according to their legal bases, relevant other GDPR issues and options for 'further use' for research. The dataflows for the research, data protection by design, data security at the various in-between phases, controller-processor agreements and the final database(s) are mapped. The report will include recommendations for possible improvements from a GDPR perspective and include a DPIA on processing of data on the CSC platform.

Handover document to next coordinating team – EXPANSE/HEAP

Document summarising network activities and ongoing activities to facilitate a smooth transition to the next team. This document will include concise reports from working groups.

Report on consumer receipts data and sample-derived data

Special report about how data from a consenting cohort providing data from consumer receipts may be used for public health in an ethically and data protection compliant way In that context also a DPIA will be performed

Knowledge and information sharing - Phase I

Report from activities implemented and resources developed in order to support data providers within the consortium to effectively upload data to HEAP

Report on implementation for research use cases

Report describing implementation and experiences from HEAP research use cases.

Report on consumer data

Scientific report on consumer data’s potential as a tool for lifestyle assessment including methodology needed to facilitate evidence-based consumer-friendly lifestyle advice. Report on potential exposure to nutrients, chemicals, and additives as accessed by consumer data, and association to health-related outcomes, or absence of such outcomes.

Integrated personal exposome and metabolomics profile

A complete report of personal exposome and metabolomics profile, and how these factors may impact the health of the participant, and potential risk for certain diseases. The report may be integrated with findings from WP8 and WP9 to provide a fuller vision of the health of a particular participant.

An established setting for evaluation

An established setting for evaluation of the extent of exposures to the populations in 2 EU countries with consecutive time-windows (continuous population-based enrolment ongoing for 10 to 35 years) allows access to bio-specimens taken at any calendar year of interest for evaluating impact of naturally occurring and iatrogenic exposures to the population. This deliverable is linked to task 3.2.

Knowledge and information-sharing plan

Report from the mapping of key topics to be addressed as well as the mapping of target audiences including a plan for the elaboration and implementation of learning and informational resources and events

Data availability confirmation

An explicit confirmation that the data used in the project is publicly available and can be freely used for the purposes of the project. (KI, M6)

Ontology and semantic metadata

Ontology and semantic metadata for metagenomic profiles and tools for NGS data management

Advanced statistics analysis on Finnish Maternity Cohort and Swedish Cervical Screening Cohort

Test the methods and decision support module implemented in Task 6.6 on the Finnish Maternity Cohort and the Swedish Cervical Screening Cohort.

HEAP Data Warehouse

Complete configuration of Hopswork for the requirements of HEAP including data management, analysis, and sharing and the integration with IC and analysis providers. We will create a Hopsworks HEAP repo in GitHub.

Demonstrator of integration of wearable sensors

Data from the pilot for testing the workflow for data streaming from to data analysis in close collaboration with WP5.

HEAP Knowledge Engine

In collaboration with WP8, WP9, WP3, WP4, implementation and integration of deep learning and the main analysis pipelines provided by the partners. Updating of Hopsworks HEAP repo in GitHub.

Improved wearable PEMs

A wearable and durable PEM that enables everyday monitoring of environmental exposure at the personal level and provides data for streaming and real-time monitoring implemented by WP6.

AI based alignment free (agnostic) taxonomic classification

AI based alignment free (agnostic) taxonomic classification algorithm able to classify virus-related sequences in metagenomic sequencing datasets, fully integrated in the bioinformatics workflow from D9.1.

FAIR Toolbox and BYOD workshops

FAIR Toolbox and BYOD workshops - This deliverable provides a Findable, Accessible, Interoperable and Reusable and Bring Your Own Data (BYOD) workshops where HEAP data provider will get a hands-on training (hackathon) and can improve and evaluate the interoperability and FAIRness of their data sets.

Formalise Knowledge in HEAP

A continuously expanding, comprehensive, population-level exposure assessment over time based on high-throughput laboratory analyses of the consecutive sample sets. In collaboration with WP6, this data will be formalised to be integrated into the HEAP IC and Data & Feature Warehouse.

Massively parallel Bioinformatics pipeline

Bioinformatics pipeline, an ecosystem of bioinformatics tools, for complete analysis of metagenomic data generated from human biospecimens using NGS technologies, optimised for Hadoop and HPC ecosystems and, in collaboration with WP6, integrated to be used through the graphical user interface of the HEAP platform.

Exposome and metabolomics analysis pipelines

Analysis pipelines for both exposome and metabolomics will be streamlined for integration with WP8 and WP9, and implementation with WP6.

Searchable database

Searchable database with data on all the donors (age, sex) and registry-derived data on all the disease endpoints that have developed in the three cohorts. The software for the database is developed by partner 2 (SSI) and allows integrity-assured, yet flexible searches that will allow easy design of maximally informative research studies based on the biospecimens and data from these cohorts. In Collaboration with WP10, data from the database will be available to the IC.

Bacterial and viral metagenomics.

High performance bioinformatics workflow for mining bacterial de novo analysis of viral genomes in metagenomic sequencing datasets genomes in NGS metagenomic sequencing datasets.

Online platform and tools

An online platform combining informational and educational material, enriched with learning management and newsletter functionalities.

Demonstrator of the data analysis and data sharing on HEAP

This deliverable will provide a test environment for curating, uploading, managing, analysing and sharing data. Partners providing data and analysis pipelines will use the environment to produce the first results from the cohorts. Shareable data and results will available through the Data & Feature Warehouse.

Project Website

The HEAP website with information on exposome research in general and the project in particular, with sections targeted either to the scientific community or to the general public.

Network website - HEAP

Website with network activities and links to all individual network websites.

Data management plan

Data Management Plan - This deliverable will provide the governance and HEAP policies regarding the access, management and sharing of all the used and produced data during and after the project is completed. The plan will cover the generation of metadata from the different data sources of the project including all the cohorts, the raw and processed data and the results to be stored, preserved and shared for future exposome research.

Publications

Challenges and recommendations for the translation of biomarkers of aging

Auteurs: null null, Chiara M. S. Herzog, Ludger J. E. Goeminne, Jesse R. Poganik, Nir Barzilai, Daniel W. Belsky, Joe Betts-LaCroix, Brian H. Chen, Michelle Chen, Alan A. Cohen, Steven R. Cummings, Peter O. Fedichev, Luigi Ferrucci, Alexander Fleming, Kristen Fortney, David Furman, Vera Gorbunova, Albert Higgins-Chen, Lee Hood, Steve Horvath, Jamie N. Justice, Douglas P. Kiel, George A. Kuchel, Jessica Las
Publié dans: Nature Aging, Numéro 4, 2024, Page(s) 1372-1383, ISSN 2662-8465
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/s43587-024-00683-3

Functionally enriched epigenetic clocks reveal tissue-specific discordant aging patterns in individuals with cancer

Auteurs: Chiara M. S. Herzog, Elisa Redl, James Barrett, Sepideh Aminzadeh-Gohari, Daniela D. Weber, Julia Tevini, Roland Lang, Barbara Kofler, Martin Widschwendter
Publié dans: Communications Medicine, Numéro 5, 2025, ISSN 2730-664X
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/s43856-025-00739-4

Prostate Cancer Testing Between Screening Rounds: Evidence from the STHLM3-MRI Trial

Auteurs: Daniela Skalt, Ting Chen, Ahmad Abbadi, Anna Lantz, Andrea Discacciati, Martin Eklund, Mark Clements, Tobias Nordström, Shuang Hao
Publié dans: European Urology Oncology, 2025, ISSN 2588-9311
Éditeur: Elsevier BV
DOI: 10.1016/j.euo.2025.05.015

Provenance of specimen and data – A prerequisite for AI development in computational pathology

Auteurs: Markus Plass, Rudolf Wittner, Petr Holub, Francesca Frexia, Cecilia Mascia, Matej Gallo, Heimo Müller, Jörg Geiger
Publié dans: New Biotechnology, 2023, ISSN 1871-6784
Éditeur: Elsevier BV
DOI: 10.1016/j.nbt.2023.09.006

Improving Species Level‐taxonomic Assignment from 16S rRNA Sequencing Technologies

Auteurs: David Bars‐Cortina, Ferran Moratalla‐Navarro, Ainhoa García‐Serrano, Núria Mach, Lois Riobó‐Mayo, Jordi Vea‐Barbany, Blanca Rius‐Sansalvador, Silvia Murcia, Mireia Obón‐Santacana, Victor Moreno
Publié dans: Current Protocols, Numéro 3, 2024, ISSN 2691-1299
Éditeur: Wiley
DOI: 10.1002/cpz1.930

Overweight in childhood and consumer purchases in a Danish cohort

Auteurs: Kathrine Kold Sørensen, Mikkel Porsborg Andersen, Frederik Trier Møller, Rikke Wiingreen, Marcella Broccia, Emil L. Fosbøl, Bochra Zareini, Thomas Alexander Gerds, Christian Torp-Pedersen
Publié dans: PLOS ONE, Numéro 19, 2024, Page(s) e0297386, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0297386

Comparison between 16S rRNA and shotgun sequencing in colorectal cancer, advanced colorectal lesions, and healthy human gut microbiota

Auteurs: David Bars-Cortina, Elies Ramon, Blanca Rius-Sansalvador, Elisabet Guinó, Ainhoa Garcia-Serrano, Núria Mach, Olfat Khannous-Lleiffe, Ester Saus, Toni Gabaldón, Gemma Ibáñez-Sanz, Lorena Rodríguez-Alonso, Alfredo Mata, Ana García-Rodríguez, Mireia Obón-Santacana, Victor Moreno
Publié dans: BMC Genomics, Numéro 25, 2024, ISSN 1471-2164
Éditeur: BioMed Central
DOI: 10.1186/s12864-024-10621-7

Assessing household lifestyle exposures from consumer purchases, the My Purchases cohort

Auteurs: Frederik T. Møller, Thor Grønborg Junker, Kathrine Kold Sørensen, Caroline Eves, Jan Wohlfahrt, Joakim Dillner, Christian Torp-Pedersen, Bartlomiej Wilkowski, Steven Chong, Tune H. Pers, Victor Yakimov, Heimo Müller, Steen Ethelberg & Mads Melbye
Publié dans: Scientific Reports, 2023, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-023-47534-6

BIBBOX, a FAIR toolbox and App Store for life science research

Auteurs: Heimo Müller, Catarina Lopes-Dias, Petr Holub, Markus Plass, Emilian Jungiwrth, Robert Reihs, Paul R. Torke, Apostolos Malatras, Anouk Berger, Heather Coombs, Joakim Dillner and Roxana Merino-Martinez
Publié dans: New Biotechnology, 2023, ISSN 1871-6784
Éditeur: Elsevier BV
DOI: 10.1016/j.nbt.2023.06.001

Susceptibility to hormone-mediated cancer is reflected by different tick rates of the epithelial and general epigenetic clock

Auteurs: James E. Barrett; Chiara Herzog; Yoo-Na Kim; Thomas E. Bartlett; Allison Jones; Iona Evans; David Cibula; Michal Zikan; Line Bjørge; Nadia Harbeck; Nicoletta Colombo; Sacha J. Howell; Angelique Flöter Rådestad; Kristina Gemzell-Danielsson; Martin Widschwendter
Publié dans: Genome Biology, Numéro 27, 2022, Page(s) 52, ISSN 1474-760X
Éditeur: BMC SpringerNature
DOI: 10.1186/s13059-022-02603-3

Cervical cancer microbiome analysis: comparing HPV 16 and 18 with other HPV types

Auteurs: Maire Hidjo, Dhananjay Mukhedkar, Collen Masimirembwa, Jiayao Lei, Laila Sara Arroyo Mühr
Publié dans: Scientific Reports, Numéro 14, 2024, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-024-73317-8

Toward Human–AI Interfaces to Support Explainability and Causability in Medical AI

Auteurs: Andreas Holzinger; Heimo Müller
Publié dans: Computer, Numéro 28, 2021, Page(s) 78-86, ISSN 1558-0814
Éditeur: IEEE Computer Society
DOI: 10.1109/mc.2021.3092610

The Ten Commandments of Ethical Medical AI

Auteurs: H. Muller, M. Mayrhofer, E. Van Veen and A. Holzinger
Publié dans: Computer, Numéro 54, 2021, Page(s) 119-123, ISSN 1558-0814
Éditeur: IEEE Computer Society
DOI: 10.1109/mc.2021.3074263

Spatio-temporal variation in prostate cancer testing in Stockholm: A population-based study

Auteurs: Balram Rai, Tobias Nordström, Anna Lantz, Rolf Lyneborg Lund, Ralf Kuja-Halkola, Marta Rado, Sara Öberg, Shuang Hao, Xiaoyang Du, Mark Clements
Publié dans: PLOS ONE, Numéro 19, 2024, Page(s) e0308254, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0308254

Explainability and causability for artificial intelligence-supported medical image analysis in the context of the European In Vitro Diagnostic Regulation

Auteurs: Heimo Müller, Andreas Holzinger, Markus Plass, Luka Brcic, Cornelia Stumptner, Kurt Zatloukal
Publié dans: New Biotechnology, Numéro 70, 2022, Page(s) 67-72, ISSN 1871-6784
Éditeur: Elsevier BV
DOI: 10.1016/j.nbt.2022.05.002

Cervical cancer screening using DNA methylation triage in a real-world population

Auteurs: Lena Schreiberhuber, James E. Barrett, Jiangrong Wang, Elisa Redl, Chiara Herzog, Charlotte D. Vavourakis, Karin Sundström, Joakim Dillner, Martin Widschwendter
Publié dans: Nature Medicine, Numéro 30, 2024, Page(s) 2251-2257, ISSN 1078-8956
Éditeur: Nature Publishing Group
DOI: 10.1038/s41591-024-03014-6

Creating personas for exposome research: the experience from the HEAP project

Auteurs: Heather Coombs; Tracy Wootton; Joakim Dillner; Heimo Müller; Anouk Berger; Zisis Kozlakidis
Publié dans: Open Research Europe, 2023, ISSN 2732-5121
Éditeur: EU
DOI: 10.12688/openreseurope.15474.1

HPV-induced host epigenetic reprogramming is lost upon progression to high-grade cervical intraepithelial neoplasia

Auteurs: Herzog C, Vavourakis CD, Barrett JE, Karbon G, Villunger A, Wang J, Sundström K, Dillner J, Widschwendter M
Publié dans: International Journal of Cancer, 2023, ISSN 0020-7136
Éditeur: John Wiley & Sons Inc.
DOI: 10.1002/ijc.34477

The European health data space: Too big to succeed?

Auteurs: Luca Marelli , Marthe Stevens , Tamar Sharon , Ine Van Hoyweghen , Martin Boeckhout , Ilaria Colussi , Alexander Degelsegger-M ́ arquez , Seliem El-Sayed , Klaus Hoeyer , Robin van Kessel , Dorota Krekora Zaj Î ac , Mihaela Matei , Sara Roda , Barbara Prainsack , Irene Schl ̈ under , Mahsa Shabani , Tom Southerington
Publié dans: Health Policy, 2023, ISSN 0168-8510
Éditeur: Elsevier BV
DOI: 10.1016/j.healthpol.2023.104861

Joint controllers in large research consortia: a funnel model to distinguish controllers in the sense of the GDPR from other partners in the consortium

Auteurs: Evert-Ben Van Veen, Martin Boeckhout, Irene Schlünder, Jan Willem Boiten, Vasco Dias
Publié dans: Open Research Europe, Numéro 2, 2024, Page(s) 80, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.12688/openreseurope.14825.2

Joint controllers in large research consortia: a funnel model to distinguish controllers in the sense of the GDPR from other partners in the consortium

Auteurs: Evert-Ben Van Veen; Martin Boeckhout; Irene Schlünder; Jan Willem Boiten; Vasco Dias
Publié dans: Open Research Europe, Numéro 28, 2022, ISSN 2732-5121
Éditeur: European Comission
DOI: 10.12688/openreseurope.14825.1

Ecological diversity profiles of non-vaccine-targeted HPVs after gender-based community vaccination efforts

Auteurs: Ville N. Pimenoff, Penelope Gray, Karolina Louvanto, Tiina Eriksson, Camilla Lagheden, Anna Söderlund-Strand, Joakim Dillner, Matti Lehtinen
Publié dans: Cell Host & Microbes, 2023, ISSN 1931-3128
Éditeur: Cell Press
DOI: 10.1016/j.chom.2023.10.001

Technical and biological sources of unreliability of Infinium probes on Illumina methylation microarrays

Auteurs: Tatiana Nazarenko, Charlotte Dafni Vavourakis, Allison Jones, Iona Evans, Lena Schreiberhuber, Christine Kastner, Isma Ishaq-Parveen, Elisa Redl, Anthony W. Watson, Kirsten Brandt, Clive Carter, Alexey Zaikin, Chiara Maria Stella Herzog, Martin Widschwendter
Publié dans: Clinical Epigenetics, Numéro 16, 2024, ISSN 1868-7083
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/s13148-024-01739-2

HPV-KITE: sequence analysis software for rapid HPV genotype detection

Auteurs: Marek Nowicki, Magdalena Mroczek, Dhananjay Mukhedkar, Piotr Bała, Ville Nikolai Pimenoff, Laila Sara Arroyo Mühr
Publié dans: Briefings in Bioinformatics, Numéro 26, 2025, ISSN 1467-5463
Éditeur: Oxford University Press
DOI: 10.1093/bib/bbaf155

Is human oversight to AI systems still possible?

Auteurs: Andreas Holzinger, Kurt Zatloukal, Heimo Müller
Publié dans: New Biotechnology, Numéro 85, 2025, Page(s) 59-62, ISSN 1871-6784
Éditeur: Elsevier BV
DOI: 10.1016/j.nbt.2024.12.003

Cost-effectiveness of Prostate Cancer Screening Using Magnetic Resonance Imaging or Standard Biopsy Based on the STHLM3-MRI Study

Auteurs: Shuang Hao, Andrea Discacciati, Martin Eklund, Emelie Heintz, Ellinor Östensson, K. Miriam Elfström, Mark S. Clements, Tobias Nordström
Publié dans: JAMA Oncology, Numéro 9, 2023, Page(s) 88, ISSN 2374-2437
Éditeur: American Medical Association (AMA)
DOI: 10.1001/jamaoncol.2022.5252

Red blood cell alloimmunization in myelodysplastic syndromes: Associations with sex, DAT‐positivity, and increased transfusion needs

Auteurs: Jenny Rydén; Mark Clements; Agneta Wikman; Eva Hellström‐Lindberg; Gustaf Edgren; Petter Höglund
Publié dans: Transfusion, 2023, ISSN 2080-1505
Éditeur: Wiley
DOI: 10.1111/trf.17562

Noncancer-Related Mortality in Randomized Clinical Trials

Auteurs: Jiayao Lei, Yunyang Deng, Mark Clements, Stephen Duffy, Peter Sasieni
Publié dans: JAMA Network Open, Numéro 8, 2025, Page(s) e2526990, ISSN 2574-3805
Éditeur: American Medical Association (AMA)
DOI: 10.1001/jamanetworkopen.2025.26990

Personas for Artificial Intelligence (AI) an Open Source Toolbox

Auteurs: Andreas Holzinger; Michaela Kargl; Bettina Kipperer; Peter Regitnig; Markus Plass; Heimo Muller
Publié dans: IEEE Access, Numéro 27, 2022, Page(s) 23732-23747, ISSN 2169-3536
Éditeur: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2022.3154776

Metagenomic Study Reveals Phage–Bacterial Interactome Dynamics in Gut and Oral Microbiota in Pancreatic Diseases

Auteurs: Laura Vilà-Quintana, Esther Fort, Laura Pardo, Maria T. Albiol-Quer, Maria Rosa Ortiz, Montserrat Capdevila, Anna Feliu, Anna Bahí, Marc Llirós, Adelaida García-Velasco, Mireia Morell Ginestà, Berta Laquente, Débora Pozas, Victor Moreno, Librado Jesús Garcia-Gil, Eric Jeffrey Duell, Ville Nikolai Pimenoff, Robert Carreras-Torres, Xavier Aldeguer
Publié dans: International Journal of Molecular Sciences, Numéro 25, 2025, Page(s) 10988, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms252010988

Explainability and causability in digital pathology

Auteurs: Markus Plass; Michaela Kargl; Tim‐Rasmus Kiehl; Peter Regitnig; Christian Geißler; Theodore Evans; Norman Zerbe; Rita Carvalho; Andreas Holzinger; Heimo Müller
Publié dans: The Journal of Pathology Clinical Research, Numéro 22, 2023, ISSN 2056-4538
Éditeur: Wiley
DOI: 10.1002/cjp2.322

Meta-Analysis and Validation of a Colorectal Cancer Risk Prediction Model Using Deep Sequenced Fecal Metagenomes.

Auteurs: Obón-Santacana M, Mas-Lloret J, Bars-Cortina D, Criado-Mesas L, Carreras-Torres R, Díez-Villanueva A, Moratalla-Navarro F, Guinó E, Ibáñez-Sanz G, Rodríguez-Alonso L, Mulet-Margalef N, Mata A, García-Rodríguez A, Duell EJ, Pimenoff VN, Moreno V.
Publié dans: Cancers, 2022, ISSN 2072-6694
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14174214

Cigarette Smoking and E-cigarette Use Induce Shared DNA Methylation Changes Linked to Carcinogenesis

Auteurs: Chiara Herzog, Allison Jones, Iona Evans, Janhavi R. Raut, Michal Zikan, David Cibula, Andrew Wong, Hermann Brenner, Rebecca C. Richmond, Martin Widschwendter
Publié dans: Cancer Research, Numéro 84, 2024, Page(s) 1898-1914, ISSN 0008-5472
Éditeur: American Association for Cancer Research
DOI: 10.1158/0008-5472.can-23-2957

Assessment of bacterial and viral gut communities in healthy and tumoral colorectal tissue using <scp>RNA</scp> and <scp>DNA</scp> deep sequencing

Auteurs: Ainhoa Garcia‐Serrano; Dhananjay Mukhedkar; Emilie Hultin; Ulla Rudsander; Yvonne Wettergren; Agustín Enrique Ure; Joakim Dillner; Laila Sara Arroyo‐Mühr
Publié dans: Cancer Medicine, Numéro 17, 2023, ISSN 2045-7634
Éditeur: Wiley
DOI: 10.1002/cam4.6483

Influence of Genetics, Immunity and the Microbiome on the Prognosis of Inflammatory Bowel Disease (IBD Prognosis Study): the protocol for a Copenhagen IBD Inception Cohort Study

Auteurs: Attauabi M, Madsen GR, Bendtsen F, Wewer AV, Wilkens R, Ilvemark J, Vladimirova N, Jensen AB, Jensen FK, Hansen SB, Siebner HR, Nielsen YJW, Møller JM, Thomsen HS, Thomsen SF, Ingels HAS, Theede K, Boysen T, Bjerrum JT, Jakobsen C, Dorn-Rasmussen M, Jansson S, Yao Y, Burian EA, Møller FT, Fana V, Wiell C, Terslev L, Østergaard M, Bertl K, Stavropoulos A, Seidelin JB, Burisch J.
Publié dans: BMJ Open, Numéro 12(6), 2022, Page(s) e055779, ISSN 2044-6055
Éditeur: BMJ Publishing Group
DOI: 10.1136/bmjopen-2021-055779

AI for life: Trends in artificial intelligence for biotechnology

Auteurs: Andreas Holzinger, Katharina Keiblinger, Petr Holub, Kurt Zatloukal, Heimo Müller
Publié dans: New Biotechnology, 2023, ISSN 1871-6784
Éditeur: Elsevier BV
DOI: 10.1016/j.nbt.2023.02.001

Using HPV-meta for human papillomavirus RNA quality detection

Auteurs: Agustin Ure; Dhananjay Mukhedkar; Laila Sara Arroyo Mühr
Publié dans: Scientific Reports, Numéro 10, 2022, Page(s) 13058, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-022-17318-5

Seroepidemiological assessment of the spread of SARS-CoV-2 among 25 and 28 year-old adult women in Finland between March 2020-June 2022

Auteurs: Penelope Gray, Tiina Eriksson, Lovisa Skoglund, Camilla Lagheden, Ceke Hellström, Elisa Pin, Anna Suomenrinne-Nordvik, Ville N. Pimenoff, Peter Nilsson, Joakim Dillner, Matti Lehtinen
Publié dans: PLOS ONE, Numéro 19, 2024, Page(s) e0305285, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0305285

Human exposome assessment platform

Auteurs: Merino Martinez, R. (Roxana); Müller, H. (Heimo); Negru, S. (Stefan); Ormenisan, A. (Alex); Arroyo Mühr, L. S. (Laila Sara); Zhang, X. (Xinyue); Trier Møller, F. (Frederik); Clements, M. S. (Mark S.); Kozlakidis, Z. (Zisis); Pimenoff, V. N. (Ville N.); Wilkowski, B. (Bartlomiej); Boeckhout, M. (Martin); Öhman, H. (Hanna); Chong, S. (Steven); Holzinger, A. (Andreas); Lehtinen, M. (Matti); van V
Publié dans: Environmental Epidemiology, Numéro 13, 2021, Page(s) e182, ISSN 2474-7882
Éditeur: Wolters Kluwer
DOI: 10.1097/ee9.0000000000000182

The Swedish Cervical Screening Cohort

Auteurs: Joakim Dillner, Laila Sara Arroyo Mühr, Sara Nordqvist Kleppe, Jiangrong Wang, Helena Andersson, Miriam Elfström, Roxana Merino, Karin Sundström
Publié dans: Scientific Data, Numéro 11, 2024, ISSN 2052-4463
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03519-2

Cohort profile: The Health, Food, Purchases and Lifestyle (SMIL) cohort – a Danish open cohort

Auteurs: Kathrine Kold Sørensen, Mikkel Porsborg Andersen, Frederik Trier Møller, Caroline Eves, Thor Grønborg Junker, Bochra Zareini, Christian Torp-Pedersen
Publié dans: BMJ Open, Numéro 14, 2024, Page(s) e078773, ISSN 2044-6055
Éditeur: BMJ Publishing Group
DOI: 10.1136/bmjopen-2023-078773

A common framework for using and reporting consumer purchase data (CPD) in foodborne outbreak investigations in Europe

Auteurs: Solveig Jore, Uffe Christian Braae, Frederik Trier Møller, Ingrid Friesema, Karthik Paranthaman, Katri Jalava, Nathalie Jourdan-DaSilva, Emma Löf, Moa Rehn, Steen Ethelberg
Publié dans: Infection Ecology & Epidemiology, Numéro 12, 2022, ISSN 2000-8686
Éditeur: Informa UK Limited
DOI: 10.1080/20008686.2021.2007828

Extending Object Stores with POSIX-like Semantics and more (industry track)

Auteurs: Mahmoud Ismail, Salman Niazi, Gautier Berthou , Mikael Ronström, Seif Haridi, Jim Dowling
Publié dans: Proceedings of the 21st International Middleware Conference Industrial Track, 2020, Page(s) 23-30, ISBN 978-1-4503-8201-4
Éditeur: ACM

The Hopsworks Feature Store for Machine Learning

Auteurs: Javier de la Rúa Martínez, Fabio Buso, Antonios Kouzoupis, Alexandru A. Ormenisan, Salman Niazi, Davit Bzhalava, Kenneth Mak, Victor Jouffrey, Mikael Ronström, Raymond Cunningham, Ralfs Zangis, Dhananjay Mukhedkar, Ayushman Khazanchi, Vladimir Vlassov, Jim Dowling
Publié dans: Companion of the 2024 International Conference on Management of Data, 2025, Page(s) 135-147
Éditeur: ACM
DOI: 10.1145/3626246.3653389

Time Travel and Provenance for Machine Learning Pipelines

Auteurs: Alexandru A. Ormenisan, Moritz Meister, Fabio Buso, Robin Andersson, Seif Haridi, Jim Dowling
Publié dans: Proceedings of the 2020 USENIX Conference on Operational Machine Learning (OpML ’20), 2020, Page(s) 13-15, ISBN 978-1-939133-15-1
Éditeur: USENIX Association

Cost-effectiveness of human papillomavirus self-sampling in the Swedish cervical screening program

Auteurs: Ellinor Östensson, Christer Borgfeldt, Kine Pedersen, Kristina Hellman, Stephen Sy, Jiayao Lei, Emily A. Burger, Mark S. Clements
Publié dans: MedRxiv, 2025, ISSN 2475-9066
Éditeur: openRxiv
DOI: 10.1101/2025.02.12.25322120

Modelling the potential contributions of polygenic risk stratification to cost-effective screening for prostate cancer

Auteurs: Padraig Dixon, Jonathan Aning, Richard Martin, Mark Clements
Publié dans: MedRxiv, 2025, ISSN 2475-9066
Éditeur: OpenRxiv
DOI: 10.1101/2025.05.19.25327897

Recherche de données OpenAIRE...

Livrables

Publications

Partager cette page Partager cette page sur les réseaux sociaux

Télécharger Télécharger le contenu de la page