Career Accelerator for Research Infrastructure Scientists

Información del proyecto

ARISE

Identificador del acuerdo de subvención: 945405

DOI

10.3030/945405

Fecha de la firma de la CE 6 Mayo 2020

Fecha de inicio 1 Mayo 2021

Fecha de finalización 30 Abril 2027

Financiado con arreglo a

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Coste total

€ 13 682 160,00

Aportación de la UE

€ 6 841 080,00

Coordinado por

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Germany

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Documents, reports (4)

First call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

First call - Inform the Project Officer about the publication of the call on the Euraxess website, by sending the link to the Euraxess website and a screen shot of the related call announcement

Fourth call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Fourth call - Inform the Project Officer about the publication of the call on the Euraxess website, by sending the link to the Euraxess website and a screen shot of the related call announcement

Third call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Third call Inform the Project Officer about the publication of the call on the Euraxess website by sending the link to the Euraxess website and a screen shot of the related call announcement

Second call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Second call Inform the Project Officer about the publication of the call on the Euraxess website by sending the link to the Euraxess website and a screen shot of the related call announcement

Publicaciones

Peer reviewed articles (23)

Assessment of Data-Independent Acquisition Mass Spectrometry (DIA-MS) for the Identification of Single Amino Acid Variants

Autores: Ivo Fierro-Monti, Klemens Fröhlich, Christian Schori, Alexander Schmidt
Publicado en: Proteomes, Edición 12, 2024, Página(s) 33, ISSN 2227-7382
Editor: MDPI AG
DOI: 10.3390/proteomes12040033

MosaiCatcher v2: a single-cell structural variations detection and analysis reference framework based on Strand-seq

Autores: Thomas Weber, Marco Raffaele Cosenza, Jan Korbel
Publicado en: Bioinformatics, Edición 39, 2023, ISSN 1367-4811
Editor: Oxford University Press (OUP)
DOI: 10.1093/bioinformatics/btad633

The crystal structure of Nictaba reveals its carbohydrate-binding properties and a new lectin dimerization mode

Autores: Yehudi Bloch, Vinicius J S Osterne, Savvas N Savvides, Els J M Van Damme
Publicado en: Glycobiology, Edición 34, 2024, ISSN 1460-2423
Editor: Oxford University Press (OUP)
DOI: 10.1093/glycob/cwae087

Biophysical screening pipeline for Cryo-EM grid preparation of membrane proteins

Autores: Niebling S, Veith K, Vollmer B, Lizarrondo J, Burastero O, Schiller J, Struve García A, Lewe P, Seuring C, Witt S, García-Alai M.
Publicado en: Frontiers in Molecular Biosciences, 2022, ISSN 2296-889X
Editor: Frontiers Media S.A.
DOI: 10.3389/fmolb.2022.882288

Three-photon microscopy: an emerging technique for deep intravital brain imaging

Autores: Robert Prevedel, Júlia Ferrer Ortas, Jason N. D. Kerr, Jack Waters, Michael O. Breckwoldt, Benjamin Deneen, Michelle Monje, Stella J. Soyka, Varun Venkataramani
Publicado en: Nature Reviews Neuroscience, 2025, ISSN 1471-003X
Editor: Nature Publishing Group
DOI: 10.1038/s41583-025-00937-y

ChiraKit: an online tool for the analysis of circular dichroism spectroscopy data

Autores: Osvaldo Burastero, Nykola C Jones, Lucas A Defelipe, Uroš Zavrtanik, San Hadži, Søren Vrønning Hoffmann, Maria M Garcia-Alai
Publicado en: Nucleic Acids Research, 2025, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkaf350

Quantifying conformational changes in the TCR:pMHC-I binding interface

Autores: Benjamin McMaster, Christopher J. Thorpe, Jamie Rossjohn, Charlotte M. Deane, Hashem Koohy
Publicado en: Frontiers in Immunology, Edición 15, 2024, ISSN 1664-3224
Editor: Frontiers Media SA
DOI: 10.3389/fimmu.2024.1491656

RBPs: an RNA editor’s choice

Autores: Ivo Fierro-Monti
Publicado en: Frontiers in Molecular Biosciences, Edición 11, 2024, ISSN 2296-889X
Editor: Frontiers Media SA
DOI: 10.3389/fmolb.2024.1454241

Raynals, an online tool for the analysis of dynamic light scattering

Autores: Osvaldo Burastero, George Draper-Barr, Bertrand Raynal Maelenn Chevreuil, Patrick Englandc and Maria Garcia Alai
Publicado en: Acta Crystallographica Section D: Structural Biology, 2023, ISSN 2059-7983
Editor: IUCr/Wiley
DOI: 10.1107/s2059798323004862

Pervasive sublethal effects of agrochemicals on insects at environmentally relevant concentrations

Autores: Lautaro Gandara, Richard Jacoby, François Laurent, Matteo Spatuzzi, Nikolaos Vlachopoulos, Noa O. Borst, Gülina Ekmen, Clement M. Potel, Martin Garrido-Rodriguez, Antonia L. Böhmert, Natalia Misunou, Bartosz J. Bartmanski, Xueying C. Li, Dominik Kutra, Jean-Karim Hériché, Christian Tischer, Maria Zimmermann-Kogadeeva, Victoria A. Ingham, Mikhail M. Savitski, Jean-Baptiste Masson, Michael Zimm
Publicado en: Science, Edición 386, 2024, Página(s) 446-453, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.ado0251

Identifying individuals using proteomics: are we there yet?

Autores: Ivo Fierro-Monti, James C Wright, Jyoti S Choudhary, Juan Antonio Vizcaíno
Publicado en: Frontiers in molecular biosciences, 2022, ISSN 2296-889X
Editor: Frontiers
DOI: 10.3389/fmolb.2022.1062031

Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

Autores: Melanie Vollmar, Santosh Tirunagari, Deborah Harrus, David Armstrong, Romana Gáborová, Deepti Gupta, Marcelo Querino Lima Afonso, Genevieve Evans, Sameer Velankar
Publicado en: Scientific Data, Edición 11, 2024, ISSN 2052-4463
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03841-9

Europe PMC in 2023.

Autores: Summer Rosonovski , Maria Levchenko , Rajat Bhatnagar, Umamageswari Chandrasekaran, Lynne Faulk, Islam Hassan, Matt Jeffryes, Syed Irtaza Mubashar, Maaly Nassar , Madhumiethaa Jayaprabha Palanisamy, Michael Parkin, Jagadeeswararao Poluru, Frances Rogers, Shyamasree Saha, Mohamed Selim, Zunaira Shafique, Michele Ide-Smith, David Stephenson, Santosh Tirunagari, Aravind Venkatesan, Lijun Xing and Mel
Publicado en: Nucleic Acids Research, 2024, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkad1085

Mesoscopic axially swept oblique plane microscope for the imaging of freely moving organisms with near-isotropic resolution

Autores: Samuel Davis, Jon-Richard Sommernes, Sebastian Hambura, Levin Riedel, Alejandro Gil, Aissam Ikmi, Florian Ströhl, Robert Prevedel
Publicado en: Biomedical Optics Express, Edición 15, 2024, Página(s) 6715, ISSN 2156-7085
Editor: The Optical Society
DOI: 10.1364/boe.537262

High-resolution X-ray phase-contrast tomography of human placenta with different wavefront markers

Autores: Sara Savatović, Davis Laundon, Fabio De Marco, Mirko Riedel, Jörg U. Hammel, Madleen Busse, Murielle Salomé, Lorella Pascolo, Irene Zanette, Rohan M. Lewis, Julia Herzen, Pierre Thibault
Publicado en: Scientific Reports, Edición 15, 2025, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-025-85105-z

Cosolvent Sites-Based Discovery of<i>Mycobacterium Tuberculosis</i>Protein Kinase G Inhibitors

Autores: Osvaldo Burastero, Lucas A. Defelipe, Gabriel Gola, Nancy L. Tateosian, Elias D. Lopez, Camila Belen Martinena, Juan Pablo Arcon, Martín Dodes Traian, Diana E. Wetzler, Isabel Bento, Xavier Barril, Javier Ramirez, Marcelo A. Marti, Maria M. Garcia-Alai, Adrián G. Turjanski
Publicado en: Journal of Medicinal Chemistry, Edición 65, 2024, Página(s) 9691-9705, ISSN 0022-2623
Editor: American Chemical Society
DOI: 10.1021/acs.jmedchem.1c02012

Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast

Autores: Lucas A. Defelipe, Katharina Veith, Osvaldo Burastero, Tatiana Kupriianova, Isabel Bento, Michal Skruzny, Knut Kölbel, Charlotte Uetrecht, Roland Thuenauer, Maria M. García-Alai
Publicado en: Nature Communications, Edición 15, 2024, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-024-54037-z

LitSumm: large language models for literature summarization of noncoding RNAs

Autores: Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Sam Griffiths-Jones, Anton I Petrov, Alex Bateman, Blake Sweeney
Publicado en: Database, Edición 2025, 2025, ISSN 1758-0463
Editor: Oxford University Press
DOI: 10.1093/database/baaf006

<i>In situ</i> serial crystallography facilitates 96-well plate structural analysis at low symmetry

Autores: Nicolas Foos, Jean-Baptise Florial, Mathias Eymery, Jeremy Sinoir, Franck Felisaz, Marcus Oscarsson, Antonia Beteva, Matthew W. Bowler, Didier Nurizzo, Gergely Papp, Montserrat Soler-Lopez, Max Nanao, Shibom Basu, Andrew A. McCarthy
Publicado en: IUCrJ, Edición 11, 2024, Página(s) 780-791, ISSN 2052-2525
Editor: International Union of Crystallography (IUCr)
DOI: 10.1107/s2052252524005785

Visualizing metagenomic and metatranscriptomic data: A comprehensive review

Autores: Eleni Aplakidou, Nikolaos Vergoulidis, Maria Chasapi, Nefeli K. Venetsianou, Maria Kokoli, Eleni Panagiotopoulou, Ioannis Iliopoulos, Evangelos Karatzas, Evangelos Pafilis, Ilias Georgakopoulos-Soares, Nikos C. Kyrpides, Georgios A. Pavlopoulos, Fotis A. Baltoumas
Publicado en: Computational and Structural Biotechnology Journal, Edición 23, 2025, Página(s) 2011-2033, ISSN 2001-0370
Editor: Elsevier BV
DOI: 10.1016/j.csbj.2024.04.060

Robust dark-field signal extraction for modulation-based x-ray tensor tomography

Autores: Ginevra Lautizi, Vittorio Di Trapani, Alain Studer, Marie-Christine Zdora, Fabio De Marco, Jisoo Kim, Federica Marone, Marco Stampanoni, Pierre Thibault
Publicado en: Applied Physics Letters, Edición 125, 2025, ISSN 0003-6951
Editor: American Institute of Physics
DOI: 10.1063/5.0244120

Can AlphaFold’s breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity?

Autores: Benjamin McMaster, Christopher Thorpe, Graham Ogg, Charlotte M. Deane & Hashem Koohy
Publicado en: Nature Methods, 2024, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1038/s41592-024-02240-7

Image scanning microscopy reconstruction by autocorrelation inversion

Autores: Daniele Ancora, Alessandro Zunino, Giuseppe Vicidomini, Alvaro H Crevenna
Publicado en: Journal of Physics: Photonics, Edición 6, 2024, Página(s) 045003, ISSN 2515-7647
Editor: IOP Publishing
DOI: 10.1088/2515-7647/ad68dd

Other (9)

Conference (poster and talk): eSPC, an online data-analysis platform for molecular biophysics

Autores: Osvaldo Burastero, Stephan Niebling, Angelica Struve, Maria Garcia Alai
Publicado en: 1st MOSBRI Scientific Conference, 2022
Editor: MOlecular-Scale Biophysics Research Infrastructure (MOSBRI)

Elucidating the mechanisms of action and evolutionary history of phage anti-defence proteins

Autores: Khalimat Murtazalieva, Evangelos Karatzas, Federico Corona, Jiawei Wang, Athanasios Typas, Robert D. Finn
Publicado en: 2025
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.06.06.658234

metagRoot: A comprehensive database of protein families associated with plant root microbiomes

Autores: Maria N. Chasapi, Iro N. Chasapi, Eleni Aplakidou, Fotis A. Baltoumas, Evangelos Karatzas, Ioannis Iliopoulos, Dimitrios J. Stravopodis, Ioannis Z. Emiris, Aydin Buluç, Ilias Georgakopoulos-Soares, Nikos C. Kyrpides, Georgios A. Pavlopoulos
Publicado en: 2025
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.05.22.653656

Conference (talk):Shining a Light on Dynamic Data: From generation to interpretation

Autores: Osvaldo Burastero
Publicado en: 2nd MOSBRI Scientific Conference, 2023
Editor: MOlecular-Scale Biophysics Research Infrastructure (MOSBRI)

Conference poster:eSPC, an online data-analysis platform for molecular biophysics

Autores: Osvaldo Burastero, Angelica Struve, Stephan Niebling, Maria Garcia Alai
Publicado en: Instruct Biennial Structural Biology Conference, 2022
Editor: Instruct-ERIC

Early regional lymph node activation drives influenza vaccine responses in an ancestrally diverse cohort

Autores: Jacqueline HY Siu, Sofia Coelho, Aime Palomeras, Sandra Belij-Rammerstorfer, Chloe H Lee, Tamara Strobel, Christopher Thorpe, Charandeep Kaur, Tom Cole, Nico Remmert, Jamie Fowler, Sam Pledger, Kyla B Dooley, Daniel Opoka, Tamas Szommer, Samantha Vanderslott, Pontiano Kaleebu, Anita Milicic, Donald B Palmer, Teresa Lambe, Brian D Marsden, Hashem Koohey, Mark Coles, Calliope A Dendrou, Katrina M Po
Publicado en: 2024
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.10.28.620725

Biocuration Toolbox

Autores: Matt Jeffryes
Publicado en: 2023
Editor: Matt Jeffreys

Image Scanning Microscopy Reconstruction by Autocorrelation Inversion

Autores: Daniele Ancora, Alessandro Zunino, Giuseppe Vicidomini, Alvaro H. Crevenna
Publicado en: 2024
Editor: ArXiv.org
DOI: 10.48550/arxiv.2404.08946

High-quality peptide evidence for annotating non-canonical open reading frames as human proteins

Autores: Eric W Deutsch, Leron W Kok, Jonathan M Mudge, Jorge Ruiz-Orera, Ivo Fierro-Monti, Zhi Sun, Jennifer G Abelin, M Mar Alba, Julie L Aspden, Ariel A Bazzini, Elspeth A Bruford, Marie A Brunet, Lorenzo Calviello, Steven A Carr, Anne-Ruxandra Carvunis, Sonia Chothani, Jim Clauwaert, Kellie Dean, Pouya Faridi, Adam Frankish, Norbert Hubner, Nicholas T Ingolia, Michele Magrane, Maria Jesus Martin, Thoma
Publicado en: 2025
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.09.09.612016

Book chapters (2)

Biophysical Characterization of Membrane Proteins

Autores: Niebling S, Burastero O, García-Alai M.
Publicado en: Methods in Molecular Biology book series (MIMB,volume 2652), 2023, ISSN 978-1-0716-3146-1978-1-0716-3147-8
Editor: Humana, New York, NY (Springer)
DOI: 10.1007/978-1-0716-3147-8_12

“Recombineering: A Modern Approach to Genetic Engineering

Autores: Sawitzke, J.A., Barenghi, A., Thomason, L., Costantino, N. and Court, D.
Publicado en: Brenner’s Encyclopaedia of Genetics 3rd Edition, 2023, ISBN 9780123749840
Editor: Elsevier