Career Accelerator for Research Infrastructure Scientists

Informations projet

ARISE

N° de convention de subvention: 945405

DOI

10.3030/945405

Date de signature de la CE 6 Mai 2020

Date de début 1 Mai 2021

Date de fin 30 Avril 2027

Financé au titre de

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Coût total

€ 13 682 160,00

Contribution de l’UE

€ 6 841 080,00

Coordonné par

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Germany

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (4)

First call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

First call - Inform the Project Officer about the publication of the call on the Euraxess website, by sending the link to the Euraxess website and a screen shot of the related call announcement

Fourth call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Fourth call - Inform the Project Officer about the publication of the call on the Euraxess website, by sending the link to the Euraxess website and a screen shot of the related call announcement

Third call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Third call Inform the Project Officer about the publication of the call on the Euraxess website by sending the link to the Euraxess website and a screen shot of the related call announcement

Second call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Second call Inform the Project Officer about the publication of the call on the Euraxess website by sending the link to the Euraxess website and a screen shot of the related call announcement

Publications

Peer reviewed articles (23)

Assessment of Data-Independent Acquisition Mass Spectrometry (DIA-MS) for the Identification of Single Amino Acid Variants

Auteurs: Ivo Fierro-Monti, Klemens Fröhlich, Christian Schori, Alexander Schmidt
Publié dans: Proteomes, Numéro 12, 2024, Page(s) 33, ISSN 2227-7382
Éditeur: MDPI AG
DOI: 10.3390/proteomes12040033

MosaiCatcher v2: a single-cell structural variations detection and analysis reference framework based on Strand-seq

Auteurs: Thomas Weber, Marco Raffaele Cosenza, Jan Korbel
Publié dans: Bioinformatics, Numéro 39, 2023, ISSN 1367-4811
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/bioinformatics/btad633

The crystal structure of Nictaba reveals its carbohydrate-binding properties and a new lectin dimerization mode

Auteurs: Yehudi Bloch, Vinicius J S Osterne, Savvas N Savvides, Els J M Van Damme
Publié dans: Glycobiology, Numéro 34, 2024, ISSN 1460-2423
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/glycob/cwae087

Biophysical screening pipeline for Cryo-EM grid preparation of membrane proteins

Auteurs: Niebling S, Veith K, Vollmer B, Lizarrondo J, Burastero O, Schiller J, Struve García A, Lewe P, Seuring C, Witt S, García-Alai M.
Publié dans: Frontiers in Molecular Biosciences, 2022, ISSN 2296-889X
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmolb.2022.882288

Three-photon microscopy: an emerging technique for deep intravital brain imaging

Auteurs: Robert Prevedel, Júlia Ferrer Ortas, Jason N. D. Kerr, Jack Waters, Michael O. Breckwoldt, Benjamin Deneen, Michelle Monje, Stella J. Soyka, Varun Venkataramani
Publié dans: Nature Reviews Neuroscience, 2025, ISSN 1471-003X
Éditeur: Nature Publishing Group
DOI: 10.1038/s41583-025-00937-y

ChiraKit: an online tool for the analysis of circular dichroism spectroscopy data

Auteurs: Osvaldo Burastero, Nykola C Jones, Lucas A Defelipe, Uroš Zavrtanik, San Hadži, Søren Vrønning Hoffmann, Maria M Garcia-Alai
Publié dans: Nucleic Acids Research, 2025, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkaf350

Quantifying conformational changes in the TCR:pMHC-I binding interface

Auteurs: Benjamin McMaster, Christopher J. Thorpe, Jamie Rossjohn, Charlotte M. Deane, Hashem Koohy
Publié dans: Frontiers in Immunology, Numéro 15, 2024, ISSN 1664-3224
Éditeur: Frontiers Media SA
DOI: 10.3389/fimmu.2024.1491656

RBPs: an RNA editor’s choice

Auteurs: Ivo Fierro-Monti
Publié dans: Frontiers in Molecular Biosciences, Numéro 11, 2024, ISSN 2296-889X
Éditeur: Frontiers Media SA
DOI: 10.3389/fmolb.2024.1454241

Raynals, an online tool for the analysis of dynamic light scattering

Auteurs: Osvaldo Burastero, George Draper-Barr, Bertrand Raynal Maelenn Chevreuil, Patrick Englandc and Maria Garcia Alai
Publié dans: Acta Crystallographica Section D: Structural Biology, 2023, ISSN 2059-7983
Éditeur: IUCr/Wiley
DOI: 10.1107/s2059798323004862

Pervasive sublethal effects of agrochemicals on insects at environmentally relevant concentrations

Auteurs: Lautaro Gandara, Richard Jacoby, François Laurent, Matteo Spatuzzi, Nikolaos Vlachopoulos, Noa O. Borst, Gülina Ekmen, Clement M. Potel, Martin Garrido-Rodriguez, Antonia L. Böhmert, Natalia Misunou, Bartosz J. Bartmanski, Xueying C. Li, Dominik Kutra, Jean-Karim Hériché, Christian Tischer, Maria Zimmermann-Kogadeeva, Victoria A. Ingham, Mikhail M. Savitski, Jean-Baptiste Masson, Michael Zimm
Publié dans: Science, Numéro 386, 2024, Page(s) 446-453, ISSN 0036-8075
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/science.ado0251

Identifying individuals using proteomics: are we there yet?

Auteurs: Ivo Fierro-Monti, James C Wright, Jyoti S Choudhary, Juan Antonio Vizcaíno
Publié dans: Frontiers in molecular biosciences, 2022, ISSN 2296-889X
Éditeur: Frontiers
DOI: 10.3389/fmolb.2022.1062031

Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

Auteurs: Melanie Vollmar, Santosh Tirunagari, Deborah Harrus, David Armstrong, Romana Gáborová, Deepti Gupta, Marcelo Querino Lima Afonso, Genevieve Evans, Sameer Velankar
Publié dans: Scientific Data, Numéro 11, 2024, ISSN 2052-4463
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03841-9

Europe PMC in 2023.

Auteurs: Summer Rosonovski , Maria Levchenko , Rajat Bhatnagar, Umamageswari Chandrasekaran, Lynne Faulk, Islam Hassan, Matt Jeffryes, Syed Irtaza Mubashar, Maaly Nassar , Madhumiethaa Jayaprabha Palanisamy, Michael Parkin, Jagadeeswararao Poluru, Frances Rogers, Shyamasree Saha, Mohamed Selim, Zunaira Shafique, Michele Ide-Smith, David Stephenson, Santosh Tirunagari, Aravind Venkatesan, Lijun Xing and Mel
Publié dans: Nucleic Acids Research, 2024, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkad1085

Mesoscopic axially swept oblique plane microscope for the imaging of freely moving organisms with near-isotropic resolution

Auteurs: Samuel Davis, Jon-Richard Sommernes, Sebastian Hambura, Levin Riedel, Alejandro Gil, Aissam Ikmi, Florian Ströhl, Robert Prevedel
Publié dans: Biomedical Optics Express, Numéro 15, 2024, Page(s) 6715, ISSN 2156-7085
Éditeur: The Optical Society
DOI: 10.1364/boe.537262

High-resolution X-ray phase-contrast tomography of human placenta with different wavefront markers

Auteurs: Sara Savatović, Davis Laundon, Fabio De Marco, Mirko Riedel, Jörg U. Hammel, Madleen Busse, Murielle Salomé, Lorella Pascolo, Irene Zanette, Rohan M. Lewis, Julia Herzen, Pierre Thibault
Publié dans: Scientific Reports, Numéro 15, 2025, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-025-85105-z

Cosolvent Sites-Based Discovery of<i>Mycobacterium Tuberculosis</i>Protein Kinase G Inhibitors

Auteurs: Osvaldo Burastero, Lucas A. Defelipe, Gabriel Gola, Nancy L. Tateosian, Elias D. Lopez, Camila Belen Martinena, Juan Pablo Arcon, Martín Dodes Traian, Diana E. Wetzler, Isabel Bento, Xavier Barril, Javier Ramirez, Marcelo A. Marti, Maria M. Garcia-Alai, Adrián G. Turjanski
Publié dans: Journal of Medicinal Chemistry, Numéro 65, 2024, Page(s) 9691-9705, ISSN 0022-2623
Éditeur: American Chemical Society
DOI: 10.1021/acs.jmedchem.1c02012

Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast

Auteurs: Lucas A. Defelipe, Katharina Veith, Osvaldo Burastero, Tatiana Kupriianova, Isabel Bento, Michal Skruzny, Knut Kölbel, Charlotte Uetrecht, Roland Thuenauer, Maria M. García-Alai
Publié dans: Nature Communications, Numéro 15, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-024-54037-z

LitSumm: large language models for literature summarization of noncoding RNAs

Auteurs: Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Sam Griffiths-Jones, Anton I Petrov, Alex Bateman, Blake Sweeney
Publié dans: Database, Numéro 2025, 2025, ISSN 1758-0463
Éditeur: Oxford University Press
DOI: 10.1093/database/baaf006

<i>In situ</i> serial crystallography facilitates 96-well plate structural analysis at low symmetry

Auteurs: Nicolas Foos, Jean-Baptise Florial, Mathias Eymery, Jeremy Sinoir, Franck Felisaz, Marcus Oscarsson, Antonia Beteva, Matthew W. Bowler, Didier Nurizzo, Gergely Papp, Montserrat Soler-Lopez, Max Nanao, Shibom Basu, Andrew A. McCarthy
Publié dans: IUCrJ, Numéro 11, 2024, Page(s) 780-791, ISSN 2052-2525
Éditeur: International Union of Crystallography (IUCr)
DOI: 10.1107/s2052252524005785

Visualizing metagenomic and metatranscriptomic data: A comprehensive review

Auteurs: Eleni Aplakidou, Nikolaos Vergoulidis, Maria Chasapi, Nefeli K. Venetsianou, Maria Kokoli, Eleni Panagiotopoulou, Ioannis Iliopoulos, Evangelos Karatzas, Evangelos Pafilis, Ilias Georgakopoulos-Soares, Nikos C. Kyrpides, Georgios A. Pavlopoulos, Fotis A. Baltoumas
Publié dans: Computational and Structural Biotechnology Journal, Numéro 23, 2025, Page(s) 2011-2033, ISSN 2001-0370
Éditeur: Elsevier BV
DOI: 10.1016/j.csbj.2024.04.060

Robust dark-field signal extraction for modulation-based x-ray tensor tomography

Auteurs: Ginevra Lautizi, Vittorio Di Trapani, Alain Studer, Marie-Christine Zdora, Fabio De Marco, Jisoo Kim, Federica Marone, Marco Stampanoni, Pierre Thibault
Publié dans: Applied Physics Letters, Numéro 125, 2025, ISSN 0003-6951
Éditeur: American Institute of Physics
DOI: 10.1063/5.0244120

Can AlphaFold’s breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity?

Auteurs: Benjamin McMaster, Christopher Thorpe, Graham Ogg, Charlotte M. Deane & Hashem Koohy
Publié dans: Nature Methods, 2024, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.1038/s41592-024-02240-7

Image scanning microscopy reconstruction by autocorrelation inversion

Auteurs: Daniele Ancora, Alessandro Zunino, Giuseppe Vicidomini, Alvaro H Crevenna
Publié dans: Journal of Physics: Photonics, Numéro 6, 2024, Page(s) 045003, ISSN 2515-7647
Éditeur: IOP Publishing
DOI: 10.1088/2515-7647/ad68dd

Other (9)

Conference (poster and talk): eSPC, an online data-analysis platform for molecular biophysics

Auteurs: Osvaldo Burastero, Stephan Niebling, Angelica Struve, Maria Garcia Alai
Publié dans: 1st MOSBRI Scientific Conference, 2022
Éditeur: MOlecular-Scale Biophysics Research Infrastructure (MOSBRI)

Elucidating the mechanisms of action and evolutionary history of phage anti-defence proteins

Auteurs: Khalimat Murtazalieva, Evangelos Karatzas, Federico Corona, Jiawei Wang, Athanasios Typas, Robert D. Finn
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.06.06.658234

metagRoot: A comprehensive database of protein families associated with plant root microbiomes

Auteurs: Maria N. Chasapi, Iro N. Chasapi, Eleni Aplakidou, Fotis A. Baltoumas, Evangelos Karatzas, Ioannis Iliopoulos, Dimitrios J. Stravopodis, Ioannis Z. Emiris, Aydin Buluç, Ilias Georgakopoulos-Soares, Nikos C. Kyrpides, Georgios A. Pavlopoulos
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.05.22.653656

Conference (talk):Shining a Light on Dynamic Data: From generation to interpretation

Auteurs: Osvaldo Burastero
Publié dans: 2nd MOSBRI Scientific Conference, 2023
Éditeur: MOlecular-Scale Biophysics Research Infrastructure (MOSBRI)

Conference poster:eSPC, an online data-analysis platform for molecular biophysics

Auteurs: Osvaldo Burastero, Angelica Struve, Stephan Niebling, Maria Garcia Alai
Publié dans: Instruct Biennial Structural Biology Conference, 2022
Éditeur: Instruct-ERIC

Early regional lymph node activation drives influenza vaccine responses in an ancestrally diverse cohort

Auteurs: Jacqueline HY Siu, Sofia Coelho, Aime Palomeras, Sandra Belij-Rammerstorfer, Chloe H Lee, Tamara Strobel, Christopher Thorpe, Charandeep Kaur, Tom Cole, Nico Remmert, Jamie Fowler, Sam Pledger, Kyla B Dooley, Daniel Opoka, Tamas Szommer, Samantha Vanderslott, Pontiano Kaleebu, Anita Milicic, Donald B Palmer, Teresa Lambe, Brian D Marsden, Hashem Koohey, Mark Coles, Calliope A Dendrou, Katrina M Po
Publié dans: 2024
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.10.28.620725

Biocuration Toolbox

Auteurs: Matt Jeffryes
Publié dans: 2023
Éditeur: Matt Jeffreys

Image Scanning Microscopy Reconstruction by Autocorrelation Inversion

Auteurs: Daniele Ancora, Alessandro Zunino, Giuseppe Vicidomini, Alvaro H. Crevenna
Publié dans: 2024
Éditeur: ArXiv.org
DOI: 10.48550/arxiv.2404.08946

High-quality peptide evidence for annotating non-canonical open reading frames as human proteins

Auteurs: Eric W Deutsch, Leron W Kok, Jonathan M Mudge, Jorge Ruiz-Orera, Ivo Fierro-Monti, Zhi Sun, Jennifer G Abelin, M Mar Alba, Julie L Aspden, Ariel A Bazzini, Elspeth A Bruford, Marie A Brunet, Lorenzo Calviello, Steven A Carr, Anne-Ruxandra Carvunis, Sonia Chothani, Jim Clauwaert, Kellie Dean, Pouya Faridi, Adam Frankish, Norbert Hubner, Nicholas T Ingolia, Michele Magrane, Maria Jesus Martin, Thoma
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.09.09.612016

Book chapters (2)

Biophysical Characterization of Membrane Proteins

Auteurs: Niebling S, Burastero O, García-Alai M.
Publié dans: Methods in Molecular Biology book series (MIMB,volume 2652), 2023, ISSN 978-1-0716-3146-1978-1-0716-3147-8
Éditeur: Humana, New York, NY (Springer)
DOI: 10.1007/978-1-0716-3147-8_12

“Recombineering: A Modern Approach to Genetic Engineering

Auteurs: Sawitzke, J.A., Barenghi, A., Thomason, L., Costantino, N. and Court, D.
Publié dans: Brenner’s Encyclopaedia of Genetics 3rd Edition, 2023, ISBN 9780123749840
Éditeur: Elsevier