Numerical modeling of cardiac electrophysiology at the cellular scale | MICROCARD | Progetto | Risultati | H2020 | CORDIS

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Report on task-based parallelization

Publication of a report on task-based parallelization.

Report on MPI communication optimization

Publication of a report on optimization of MPI communication in the code.

Report on the sustainable roadmap for MICROCARD platform and software

Publication of a report on the sustainable roadmap for the MICROCARD platform and software.

A Software Management Plan for the HPC simulation platform μ CARP

Creation of a Software Management Plan for the HPC simulation platform CARP

Results of the surveys conducted in M18 and M36 on ease of use of the cloud-based web platform

Publication of a report on the results of the surveys conducted in M18 and M36 on ease of use of the cloud-based web platform

Linear solver development and performance assessment report

Publication of a report on the development of linear solvers and an assessment of their performance

Report on High-Performance Data Output

Publication of a report on High-Performance Data Output

Report on automatic checkpoint placement strategy

Publication of a report on automatic checkpoint placement strategy in the code

Report on the implemented DevOps toolchain as a best-practice example

Linear solver application integration proof

Demonstration of the application of the newly integrated linear solver(s).

Resilient parallelization support

Prototype of the code with task-based parallellization that is resilient to hardware failures.

Online publication of the use cases

Posts on the use cases intended for a large audience, on the project website.

Pubblicazioni

A comparison of Algebraic Multigrid Bidomain solvers on hybrid CPU–GPU architectures

Autori: Edoardo Centofanti, Simone Scacchi
Pubblicato in: Computer Methods in Applied Mechanics and Engineering, Numero 423, 2024, Pagina/e 116875, ISSN 0045-7825
Editore: Elsevier BV
DOI: 10.1016/j.cma.2024.116875

Robust parallel nonlinear solvers for implicit time discretizations of the Bidomain equations with staggered ionic models

Autori: Nicolás A. Barnafi, Ngoc Mai Monica Huynh, Luca F. Pavarino, Simone Scacchi
Pubblicato in: Computers & Mathematics with Applications, Numero 167, 2024, Pagina/e 134-149, ISSN 0898-1221
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.camwa.2024.04.014

Explicit stabilized multirate methods for the monodomain model in cardiac electrophysiology

Autori: Giacomo Rosilho de Souza, Marcus Grote, Simone Pezzuto, Rolf Krause
Pubblicato in: ESAIM: Mathematical Modelling and Numerical Analysis, 2024, ISSN 2822-7840
Editore: edpsciences
DOI: 10.1051/m2an/2024030

A Review of Healthy and Fibrotic Myocardium Microstructure Modeling and Corresponding Intracardiac Electrograms

Autori: Sánchez, J.; Loewe, A.
Pubblicato in: Frontiers in Physiology, 2022, ISSN 1664-042X
Editore: Frontiers Research Foundation
DOI: 10.3389/fphys.2022.908069

Scalable and Robust Dual-Primal Newton–Krylov Deluxe Solvers for Cardiac Electrophysiology with Biophysical Ionic Models

Autori: Ngoc Mai Monica Huynh; Luca F. Pavarino; Simone Scacchi
Pubblicato in: Vietnam Journal of Mathematics, Numero 50, 2022, ISSN 2305-221X
Editore: Springer Science + Business Media
DOI: 10.1007/s10013-022-00576-1

Boundary integral formulation of the cell-by-cell model of cardiac electrophysiology

Autori: Giacomo Rosilho de Souza, Rolf Krause, Simone Pezzuto
Pubblicato in: Engineering Analysis with Boundary Elements, Numero 158, 2023, Pagina/e 239-251, ISSN 0955-7997
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.enganabound.2023.10.021

Characterization of the pace-and-drive capacity of the human sinoatrial node: A 3D in silico study

Autori: Antoine Amsaleg; Jorge Sánchez; Ralf Mikut; Axel Loewe
Pubblicato in: Biophysical Journal, Numero 121, 2022, Pagina/e 4247–4259, ISSN 0006-3495
Editore: Biophysical Society
DOI: 10.1016/j.bpj.2022.10.020

A Survey of General-purpose Polyhedral Compilers

Autori: Arun Thangamani, Vincent Loechner, Stéphane Genaud
Pubblicato in: ACM Transactions on Architecture and Code Optimization, 2024, ISSN 1544-3566
Editore: Association for Computing Machinary, Inc.
DOI: 10.1145/3674735

Epicardial Dispersion of Repolarization Promotes the Onset of Reentry in Brugada Syndrome: A Numerical Simulation Study

Autori: Simone Scacchi, Piero Colli Franzone, Luca F. Pavarino, Vincenzo Gionti, Cesare Storti
Pubblicato in: Bulletin of Mathematical Biology, Numero 85, 2023, ISSN 0092-8240
Editore: Academic Press
DOI: 10.1007/s11538-023-01124-9

The openCARP CDEConcept for and implementation of a sustainable collaborativedevelopment environment for research software

Autori: Felix Bach, Jochen Klar, Axel Loewe, Jorge Sánchez, Gunnar Seemann, Yung-Lin Huang, Robert Ulrich
Pubblicato in: Bausteine Forschungsdatenmanagement, Numero Nr.1, 2022, ISSN 2626-7489
Editore: Marburg: Philipps-Universität
DOI: 10.17192/bfdm.2022.1.8368

À quoi servent les ordinateurs les plus puissants au monde ? Un exemple en cardiologie.

Autori: Emmanuelle Saillard; Mark Potse
Pubblicato in: The Conversation, 2022, ISSN 2431-2134
Editore: The Conversation Media Group

The role of pulse timing in cardiac defibrillation

Autori: Joshua Steyer, Thomas Lilienkamp, Stefan Luther, Ulrich Parlitz
Pubblicato in: Frontiers in Network Physiology, Numero 2, 2023, ISSN 2674-0109
Editore: Frontiers
DOI: 10.3389/fnetp.2022.1007585

Evaluating computational efforts and physiological resolution of mathematical models of cardiac tissue

Autori: Karoline Horgmo Jæger, James D. Trotter, Xing Cai, Hermenegild Arevalo, Aslak Tveito
Pubblicato in: Scientific Reports, Numero 14, 2024, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-024-67431-w

Editorial: Atrial Fibrillation: Technology for Diagnosis, Monitoring, and Treatment

Autori: Omer Berenfeld, Valentina D. A. Corino, Axel Loewe, Juan Pablo Martínez and Jose F. Rodriguez Matas
Pubblicato in: Frontiers in Physiology, 2022, ISSN 1664-042X
Editore: Frontiers Research Foundation
DOI: 10.3389/fphys.2022.848096

Resource-Efficient Use of Modern Processor Architectures For Numerically Solving Cardiac Ionic Cell Models

Autori: Kristian Gregorius Hustad; Xing Cai
Pubblicato in: Frontiers in Physiology, 2022, ISSN 1664-042X
Editore: Frontiers Research Foundation
DOI: 10.3389/fphys.2022.904648

Convergence Analysis of BDDC Preconditioners for Composite DG Discretizations of the Cardiac Cell-By-Cell Model

Autori: Ngoc Mai Monica Huynh, Fatemeh Chegini, Luca Franco Pavarino, Martin Weiser, Simone Scacchi
Pubblicato in: SIAM Journal on Scientific Computing, Numero 45, 2023, Pagina/e A2836-A2857, ISSN 1064-8275
Editore: Society for Industrial and Applied Mathematics
DOI: 10.1137/22m1542532

Fibrotic Remodeling during Persistent Atrial Fibrillation: In Silico Investigation of the Role of Calcium for Human Atrial Myofibroblast Electrophysiology

Autori: Jorge Sánchez , Beatriz Trenor, Javier Saiz, Olaf Dössel and Axel Loewe
Pubblicato in: Cells, Numero 10, 2021, ISSN 2073-4409
Editore: MDPI
DOI: 10.3390/cells10112852

Parallel nonlinear solvers in computational cardiac electrophysiology

Autori: Nicolas Alejandro BARNAFI; Ngoc Mai Monica HUYNH; Luca Franco PAVARINO; Simone SCACCHI
Pubblicato in: IFAC-PapersOnLine, 2022
Editore: Elsevier
DOI: 10.1016/j.ifacol.2022.09.093

Combining Uncore Frequency and Dynamic Power Capping to Improve Power Savings

Autori: Amina Guermouche
Pubblicato in: 2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 2022, ISBN 978-1-6654-9748-0
Editore: IEEE
DOI: 10.1109/ipdpsw55747.2022.00164

Set di dati

Simulated Local Electrical Impedance in Atrial Tissue With Varying Contact Force

Autori: Martínez Antón, Carmen; Sánchez, Jorge; Heinkele, Andreas; Unger, Laura Anna; Haas, Annika; Schmidt, Kerstin; Luik, Armin; Loewe, Axel; Dössel, Olaf
Pubblicato in: Zenodo

Impedance Reconstruction of Non-transmural Cardiac Fibrosis

Autori: Martínez Antón, Carmen; Sánchez, Jorge; Caslli, Nansi; Heinemann, Lena; Unger, Laura Anna; Loewe, Axel; Dössel, Olaf
Pubblicato in: Zenodo

Software

Ginkgo: A high performance numerical linear algebra library

Autori: Aliaga, José I.; Anzt, Hartwig; Chen, Yenchen; Cojean, Terry; Göbel, Fritz; Grützmacher, Thomas; Holeksa, Claudius; Koch, Marcel; Nayak, Pratik; Olenik, Gregor; Ribizel, Tobias; Tsai, Yuhsiang
Editore: Zenodo
DOI: 10.5281/zenodo.8303153; 10.5281/zenodo.8303152

openCARP (v9.0)

Autori: OpenCARP Consortium; Appel, Stephanie; Arevalo, Hermenegild; Augustin, Christoph; Azzolin, Luca; Barrios Espinosa, Cristian; Bayer, Jason; Bishop, Martin; Boyle, Patrick M.; Caforio, Federica; Campos, Fernando; Chegini, Fatemeh; Colin, Raphaël; Costa, Caroline Mendonca; Crozier, Andrew; Fastl, Thomas; Gerach, Tobias; Gillette, Karli; Gsell, Matthias; Götz, Christian; Houillon, Marie; Huang, Yung-Lin (Cary); Huppé, Atoli; Hustad, Kristian Gregorius; Karabelas, Elias; Krauß, Jonathan; Linder, Moritz; Loechner, Vincent; Loewe, Axel; Maierhofer, Pascal; Marx, Laura; Myklebust, Lena; Neic, Aurel; Nothstein, Mark; Plank, Gernot; Prassl, Anton; Sales Bellés, Clara; Seemann, Gunnar; Stary, Tomas; Steyer, Joshua; Sánchez, Jorge; Thangamani, Arun; Tippmann, Nico; Trevisan Jost, Tiago; Vigmond, Ed; Wülfers, Eike Moritz
Editore: Karlsruhe Institute of Technology (KIT)
DOI: 10.35097/562; 10.35097/874; 10.35097/672; 10.35097/486; 10.35097/496; 10.35097/388; 10.35097/703; 10.35097/3k23ep4qffdze09u; 10.35097/bs2x5z2h3tcf2spe; 10.35097/1845; 10.35097/70234yr69tr09krh; 10.35097/1979; 10.35097/455; 10.35097/389; 10.35097/542; 10.35097/1027; 10.35097/974

FACILE-RS (v2.1.0)

Autori: openCARP consortium; Marie Houillon; Jochen Klar; Axel Loewe; Tomas Stary
Editore: Karlsruhe Institute of Technology
DOI: 10.35097/iqqmxdotwmegwikf; 10.35097/sm56x1e27ebsr4fu; 10.35097/znrp11dfcc4sv3pt; 10.35097/71jxts74tqejqbyn; 10.35097/ta2t9z8ze6m9mhts; 10.35097/ay82j7v07m1zvhwv; 10.35097/15htk3b7605e87yp; 10.35097/x8561tn0g9rbav53

Altri prodotti di ricerca

Artifact and instructions to generate experimental results for conference proceeding Euro-Par 2023 paper: GPU Code Generation of Cardiac Electrophysiology Simulation with MLIR

Autori: Trevisan Jost, Tiago; Thangamani, Arun; Colin, Raphaël; Loechner, Vincent; Genaud, Stéphane; bramas, berenger
Pubblicato in: figshare

Risultati finali

Pubblicazioni

Set di dati

Software

Altri prodotti di ricerca

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