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Activated GEnebank NeTwork

Project description

Establishing an innovative gene bank network

As storehouses of seeds or vegetative tissue, gene banks are dedicated to seed conservation. They were created to preserve genetic material with the idea that they might be used in the future in breeding programmes. The EU-funded AGENT project will transform gene banks from living archives into bio-digital resource centres able to face the new technological challenges in agronomy. A consortium of 15 gene banks and four gene bank genomic centres will establish a network that will focus on barley and wheat. The project will set up a European (global) crop genomic diversity atlas, activate currently inaccessible legacy phenotypic data, and initiate a new concept of concerted accumulation of phenologic and agronomic data for individual collections of genetic resources. Phenotyping will take into consideration varied environmental data conditions.

Objective

AGENT aims to transform genebanks (GB) from living archives into bio-digital resources centres, equipped to meet the needs of a changing world. Fifteen GB and four genebank genomic centers will create a network to work exemplarily on barley and wheat for (i) establishing a European (global) crop genomic diversity atlas, (ii) activating currently inaccessible legacy phenotypic data, (iii) implementing a novel concept of concerted accumulation of phenologic and agronomic data for individual GenRes collections to establish training population datasets for the genome-wide prediction of untested GenRes accessions. Phenotyping will take into account diverse environmental conditions (climate, soil, geography, pathogens) provided by the diversity of eco-geographic locations of the participating GB and their partners. These activities will be supported by a bioinformatics network that will implement FAIR data principles, standards, protocols, and data formats enabling data storage, access, use, and re-use, extending the existing EURISCO GenRes portal for new data types. AGENT will use existing solutions established by ongoing European projects and international initiatives, but also develop new tools for novel functionality of data access, visualisation, and use, which will be connected and implemented via plugin or web-services, allowing their incorporation in EURISCO and other data portals, and their easy application to other crop GenRes, based on data already available at EURISCO or provided by AGENT partner GB. A coordinated testing network is another unique layer of AGENT, directly involving stakeholders (e.g. farmer cooperatives, breeding companies, NGOs) in monitoring, mentoring, capacity building and training in the development of workflows and tools. Thus, AGENT project results will be directly disseminated to GB, researchers, breeders, policy makers and the general public and raise awareness of the general as well as the specific societal importance of GenRes.

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Topic(s)

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Funding Scheme

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RIA - Research and Innovation action

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Call for proposal

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(opens in new window) H2020-SFS-2018-2020

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Coordinator

LEIBNIZ - INSTITUT FUER PFLANZENGENETIK UND KULTURPFLANZENFORSCHUNG
Net EU contribution

Net EU financial contribution. The sum of money that the participant receives, deducted by the EU contribution to its linked third party. It considers the distribution of the EU financial contribution between direct beneficiaries of the project and other types of participants, like third-party participants.

€ 966 250,00
Address
CORRENSTRASSE 3
06466 Seeland Ot Gatersleben
Germany

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Region
Sachsen-Anhalt Sachsen-Anhalt Salzlandkreis
Activity type
Research Organisations
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Total cost

The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.

€ 966 250,00

Participants (20)

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