Activated GEnebank NeTwork

Deliverables

Communication Toolkit

D72Communication Toolkit M7

Public project website

Public project website M4

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces M24

SNP assay for QC and QM in AGENT gene banks

SNP assay for QC and QM in AGENT gene banks M12

Extended submission format for EURISCO

Extended submission format for EURISCO M36

Report on genotypic information of ‘bridging collection'

Report on genotypic information of bridging collection M18

Final guidelines for dataflow

Final guidelines for dataflow M18

Publications

From data to knowledge - big data needs stewardship, a plant phenomics perspective

Author(s): Arend, Daniel; Psaroudakis, Dennis; Memon, Junaid Altaf; Rey‐Mazón, Elena; Schüler, Danuta; Szymanski, Jedrzej Jakub; Scholz, Uwe; Junker, Astrid; Lange, Matthias
Published in: The plant journal, 111(2):335-347, Issue vol. 11, No. 2, 2022, ISSN 0960-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15804

BARLEY YIELD RESPONSE TO AGROCLIMATIC INDICES VARIABILITY

Author(s): Liliana VASILESCU, Eugen PETCU, Alexandrina SÎRBU, Cătălin LAZĂR, Lenuța Iuliana EPURE, Elena PETCU, Lidia CANĂ, Maria TOADER
Published in: Scientific Papers. Series A. Agronomy, 2022, ISSN 2285-5807
Publisher: University of Agronomic Sciences and Veterinary Medicine of Bucharest
DOI: 10.5281/zenodo.7139879

Advancing the Conservation and Utilization of Barley Genetic Resources: Insights into Germplasm Management and Breeding for Sustainable Agriculture

Author(s): Visioni, A.; Basile, B.; Amri, A.; Sanchez-Garcia, M.; Corrado, G.
Published in: Plants, Issue 2023, 12(18), 2023, Page(s) 3186, ISSN 2223-7747
Publisher: MDPI
DOI: 10.3390/plants12183186

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations

Author(s): Franco Röckel; Toni Schreiber; Danuta Schüler; Ulrike Braun; Ina Krukenberg; Florian Schwander; Andreas Peil; Christine Brandt; Evelin Willner; Daniel Gransow; Uwe Scholz; Steffen Kecke; Erika Maul; Matthias Lange; Reinhard Töpfer
Published in: Crossref, Issue 1, 2022, ISSN 2046-1402
Publisher: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.1

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

Author(s): Sebastian Beier; Anne Fiebig; Cyril Pommier; Isuru Liyanage; Matthias Lange; Paul J. Kersey; Stephan Weise; Richard Finkers; Baron Koylass; Timothee Cezard; Mélanie Courtot; Bruno Contreras-Moreira; Guy Naamati; Sarah Dyer; Uwe Scholz
Published in: F1000Research 11 (2022), Issue 1, 2022, ISSN 2046-1402
Publisher: F1000 Research Ltd.
DOI: 10.12688/f1000research.109080.2

GRAIN MORPHOMETRY ANALYSIS OF ROMANIAN WINTER BARLEY CULTIVARS REGISTERED DURING 1959-2019 PERIOD

Author(s): Liliana Vasilescu, Eugen Petcu, Alexandrina Sîrbu, Elena Petcu, Cătălin Lazăr
Published in: ROMANIAN AGRICULTURAL RESEARCH, 2022, ISSN 2067-5720
Publisher: National Agricultural Research Institute Fundulea
DOI: 10.5281/zenodo.6962256

Choosing the right tool: Leveraging of plant genetic resources in wheat (Triticum aestivum L.) benefits from selection of a suitable genomic prediction model

Author(s): Marcel O. Berkner, Albert W. Schulthess, Yong Jiang, Yusheng Zhao, Markus Oppermann, and Jochen C. Reif
Published in: Theoretical and Applied Genetics, Issue 194, 2022, ISSN 1432-2242
Publisher: Springer Science+Business Media
DOI: 10.1007/s00122-022-04227-4

Using Genome-Wide Predictions to Assess the Phenotypic Variation of a Barley (Hordeum sp.) Gene Bank Collection for Important Agronomic Traits and Passport Information

Author(s): Yong Jiang, Stephan Weise, Andreas Graner, Jochen C. Reif
Published in: Frontiers in Plant Science, Issue 11, 2021, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.604781

Introducing Beneficial Alleles from Plant Genetic Resources into the Wheat Germplasm

Author(s): Shivali Sharma, Albert W. Schulthess, Filippo M. Bassi, Ekaterina D. Badaeva, Kerstin Neumann, Andreas Graner, Hakan Özkan, Peter Werner, Helmut Knüpffer, Benjamin Kilian
Published in: Biology, Issue 10/10, 2021, Page(s) 982, ISSN 2079-7737
Publisher: MDPI
DOI: 10.3390/biology10100982

Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses

Author(s): Maria Y. Gonzalez, Yusheng Zhao, Yong Jiang, Nils Stein, Antje Habekuss, Jochen C. Reif, Albert W. Schulthess
Published in: Theoretical and Applied Genetics, Issue 134/7, 2021, Page(s) 2181-2196, ISSN 0040-5752
Publisher: Springer Verlag
DOI: 10.1007/s00122-021-03815-0

Exploring the legacy of Central European historical winter wheat landraces

Author(s): András Cseh, Péter Poczai, Tibor Kiss, Krisztina Balla, Zita Berki, Ádám Horváth, Csaba Kuti & Ildikó Karsai
Published in: Sci Rep, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-03261-4

Genomic prediction reveals unexplored variation in grain protein and lysine content across a vast winter wheat genebank collection

Author(s): Berkner MO, Weise S, Reif JC and Schulthess AW
Published in: Frontiers - Plant Science (Sec. Plant Breeding ), Issue Volume 14 - 2023, 2024, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1270298

"""On the Way to Plant Data Commons - A Genotyping Use Case"""

Author(s): Manuel Feser, Patrick König, Anne Fiebig, Daniel Arend, Matthias Lange, Uwe Scholz
Published in: Journal of Integrative Bioinformatics, 2022, ISSN 1613-4516
Publisher: Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)
DOI: 10.1515/jib-2022-0033

Deliverables

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