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CORDIS - EU research results
CORDIS

Activated GEnebank NeTwork

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Reports with genebank capacity building recommendations (opens in new window)

Reports with genebank capacity building recommendations (M59)

Extended submission format for EURISCO (opens in new window)

Extended submission format for EURISCO M36

Use FIGS+ score to define gap analysis for joint collection missions and supporting documents for in situ protection (opens in new window)

Use FIGS+ score to define gap analysis for joint collection missions and supporting documents for in situ protection (M58)

Report on genotypic information of ‘bridging collection' (opens in new window)

Report on genotypic information of bridging collection M18

VCF file reporting SNP variation of all barley and wheat samples within AGENT (opens in new window)

VCF file reporting SNP variation of all barley and wheat samples within AGENT (M42)

Report on genotypic information of ‘precision collections' (opens in new window)

Report on genotypic information of ‘precision collections’ (M36)

Final webinar to disseminate knowledge on digital gene banking to the wider community (opens in new window)

Final webinar to disseminate knowledge on digital gene banking to the wider community (M60)

Final guidelines for dataflow (opens in new window)

Final guidelines for dataflow M18

AGENT integrated data workflow developed and deployed (opens in new window)

AGENT integrated data workflow developed and deployed (M48)

Communication Toolkit (opens in new window)

D72Communication Toolkit M7

Public project website (opens in new window)

Public project website M4

Assign a FIGS+ score for each trait to all AGENT accessions (opens in new window)

Assign a FIGS+ score for each trait to all AGENT accessions (M57)

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces (opens in new window)

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces M24

Audio-visual material to explain key features of the project (opens in new window)

Audio-visual material to explain key features of the project (M48)

Assign haplotype score to all AGENT accessions for QTLs newly discovered or from the literature (opens in new window)

Assign haplotype score to all AGENT accessions for QTLs newly discovered or from the literature (M50)

Final release of the AGENT data platform, including tools for data management, analysis, prediction, visualisation and access (opens in new window)

Final release of the AGENT data platform, including tools for data management, analysis, prediction, visualisation and access (M60)

Assign genomic estimated breeding values for each trait to all AGENT accessions (opens in new window)

Assign genomic estimated breeding values for each trait to all AGENT accessions (M54)

Publications

The German Federal Ex Situ Genebank for Agricultural and Horticultural Crops – Conservation, exploitation and steps towards a bio-digital resource centre (opens in new window)

Author(s): Stephan Weise, Frank R. Blattner, Andreas Börner, Klaus J. Dehmer, Marion Grübe, Dörte Harpke, Ulrike Lohwasser, Markus Oppermann, Nils Stein, Evelin Willner, Manuela Nagel
Published in: Genetic Resources, 2025, Page(s) 91-105, ISSN 2708-3764
Publisher: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.gydy5145

Genomic predictions to leverage phenotypic data across genebanks (opens in new window)

Author(s): El Hanafi S, Jiang Y, Kehel Z, Schulthess AW, Zhao Y, Mascher M, Haupt M, Himmelbach A, Stein N, Amri A and Reif JC
Published in: Frontiers - Plant Science, 2023, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1227656

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies (opens in new window)

Author(s): Marcel O. Berkner, Yong Jiang, Jochen C. Reif, Albert W. Schulthess
Published in: Frontiers in Plant Science, Issue 15, 2024, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1451749

From data to knowledge - big data needs stewardship, a plant phenomics perspective (opens in new window)

Author(s): Arend, Daniel; Psaroudakis, Dennis; Memon, Junaid Altaf; Rey‐Mazón, Elena; Schüler, Danuta; Szymanski, Jedrzej Jakub; Scholz, Uwe; Junker, Astrid; Lange, Matthias
Published in: The plant journal, 111(2):335-347, Issue vol. 11, No. 2, 2022, ISSN 0960-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15804

BARLEY YIELD RESPONSE TO AGROCLIMATIC INDICES VARIABILITY (opens in new window)

Author(s): Liliana VASILESCU, Eugen PETCU, Alexandrina SÎRBU, Cătălin LAZĂR, Lenuța Iuliana EPURE, Elena PETCU, Lidia CANĂ, Maria TOADER
Published in: Scientific Papers. Series A. Agronomy, 2022, ISSN 2285-5807
Publisher: University of Agronomic Sciences and Veterinary Medicine of Bucharest
DOI: 10.5281/zenodo.7139879

Advancing the Conservation and Utilization of Barley Genetic Resources: Insights into Germplasm Management and Breeding for Sustainable Agriculture (opens in new window)

Author(s): Visioni, A.; Basile, B.; Amri, A.; Sanchez-Garcia, M.; Corrado, G.
Published in: Plants, Issue 2023, 12(18), 2023, Page(s) 3186, ISSN 2223-7747
Publisher: MDPI
DOI: 10.3390/plants12183186

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations (opens in new window)

Author(s): Franco Röckel; Toni Schreiber; Danuta Schüler; Ulrike Braun; Ina Krukenberg; Florian Schwander; Andreas Peil; Christine Brandt; Evelin Willner; Daniel Gransow; Uwe Scholz; Steffen Kecke; Erika Maul; Matthias Lange; Reinhard Töpfer
Published in: Crossref, Issue 1, 2022, ISSN 2046-1402
Publisher: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.1

Curation of historical phenotypic wheat data from the Czech Genebank for research and breeding (opens in new window)

Author(s): Pavel Svoboda, Vojtěch Holubec, Jochen C. Reif, Marcel O. Berkner
Published in: Scientific Data, Issue 11, 2024, ISSN 2052-4463
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03598-1

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR (opens in new window)

Author(s): Sebastian Beier; Anne Fiebig; Cyril Pommier; Isuru Liyanage; Matthias Lange; Paul J. Kersey; Stephan Weise; Richard Finkers; Baron Koylass; Timothee Cezard; Mélanie Courtot; Bruno Contreras-Moreira; Guy Naamati; Sarah Dyer; Uwe Scholz
Published in: F1000Research 11 (2022), Issue 1, 2022, ISSN 2046-1402
Publisher: F1000 Research Ltd.
DOI: 10.12688/f1000research.109080.2

GRAIN MORPHOMETRY ANALYSIS OF ROMANIAN WINTER BARLEY CULTIVARS REGISTERED DURING 1959-2019 PERIOD (opens in new window)

Author(s): Liliana Vasilescu, Eugen Petcu, Alexandrina Sîrbu, Elena Petcu, Cătălin Lazăr
Published in: ROMANIAN AGRICULTURAL RESEARCH, 2022, ISSN 2067-5720
Publisher: National Agricultural Research Institute Fundulea
DOI: 10.5281/zenodo.6962256

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations (opens in new window)

Author(s): Franco Röckel, Toni Schreiber, Danuta Schüler, Ulrike Braun, Ina Krukenberg, Florian Schwander, Andreas Peil, Christine Brandt, Evelin Willner, Daniel Gransow, Uwe Scholz, Steffen Kecke, Erika Maul, Matthias Lange, Reinhard Töpfer
Published in: F1000Research, Issue 11, 2023, Page(s) 12, ISSN 2046-1402
Publisher: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.2

Strengthening European research cooperation on plant genetic resources conservation and use (opens in new window)

Author(s): Sandra Goritschnig, Stephan Weise, Filippo Guzzon, Lorenzo Maggioni, Theo Van Hintum, Lise Lykke Steffensen, Nils Stein, Giovanni Giuliano
Published in: Genetic Resources, 2025, Page(s) 119-134, ISSN 2708-3764
Publisher: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.luzj7324

Choosing the right tool: Leveraging of plant genetic resources in wheat (Triticum aestivum L.) benefits from selection of a suitable genomic prediction model (opens in new window)

Author(s): Marcel O. Berkner, Albert W. Schulthess, Yong Jiang, Yusheng Zhao, Markus Oppermann, and Jochen C. Reif
Published in: Theoretical and Applied Genetics, Issue 194, 2022, ISSN 1432-2242
Publisher: Springer Science+Business Media
DOI: 10.1007/s00122-022-04227-4

Using Genome-Wide Predictions to Assess the Phenotypic Variation of a Barley (Hordeum sp.) Gene Bank Collection for Important Agronomic Traits and Passport Information (opens in new window)

Author(s): Yong Jiang, Stephan Weise, Andreas Graner, Jochen C. Reif
Published in: Frontiers in Plant Science, Issue 11, 2021, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.604781

Genetic Diversity regarding grain size and shape of common winter wheat

Author(s): Cristina Mihaela MARINCIU, Gabriela ŞERBAN, Indira GALIT, Vasile MANDEA
Published in: Scientific Papers Agronomy, 2021, ISSN 2285-5785
Publisher: University of Agronomic Sciences and Veterinary Medicine of Bucharest

Genebank Peer Reviews: A powerful tool to improve genebank quality and promote collaboration (opens in new window)

Author(s): Theo Van Hintum, Sharon Balding, Gergana Desheva, John Dickie, María José Díez, Luis Guasch, Pavol Hauptvogel, Vojtěch Holubec, Dagmar Janovská, Ulrike Lohwasser, Isaura Martín, Ludmila Papoušková, Beate Schierscher-Viret, Lise Lykke Steffensen, Katya Uzundzhalieva, Patrizia Vaccino, José Vicente Valcárcel
Published in: Genetic Resources, Issue 6, 2025, Page(s) 115-121, ISSN 2708-3764
Publisher: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.oadz7911

Introducing Beneficial Alleles from Plant Genetic Resources into the Wheat Germplasm (opens in new window)

Author(s): Shivali Sharma, Albert W. Schulthess, Filippo M. Bassi, Ekaterina D. Badaeva, Kerstin Neumann, Andreas Graner, Hakan Özkan, Peter Werner, Helmut Knüpffer, Benjamin Kilian
Published in: Biology, Issue 10/10, 2021, Page(s) 982, ISSN 2079-7737
Publisher: MDPI
DOI: 10.3390/biology10100982

Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses (opens in new window)

Author(s): Maria Y. Gonzalez, Yusheng Zhao, Yong Jiang, Nils Stein, Antje Habekuss, Jochen C. Reif, Albert W. Schulthess
Published in: Theoretical and Applied Genetics, Issue 134/7, 2021, Page(s) 2181-2196, ISSN 0040-5752
Publisher: Springer Verlag
DOI: 10.1007/s00122-021-03815-0

Exploring the legacy of Central European historical winter wheat landraces (opens in new window)

Author(s): András Cseh, Péter Poczai, Tibor Kiss, Krisztina Balla, Zita Berki, Ádám Horváth, Csaba Kuti & Ildikó Karsai
Published in: Sci Rep, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-03261-4

k-mer-based GWAS in a wheat collection reveals novel and diverse sources of powdery mildew resistance (opens in new window)

Author(s): Benjamin Jaegle, Yoav Voichek, Max Haupt, Alexandros G. Sotiropoulos, Kevin Gauthier, Matthias Heuberger, Esther Jung, Gerhard Herren, Victoria Widrig, Rebecca Leber, Yipu Li, Beate Schierscher, Sarah Serex, Maja Boczkowska, Marta-Puchta Jasińska, Paulina Bolc, Boulos Chalhoub, Nils Stein, Beat Keller, Javier Sánchez-Martín
Published in: Genome Biology, Issue 26, 2025, ISSN 1474-760X
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/s13059-025-03645-z

Genomic prediction reveals unexplored variation in grain protein and lysine content across a vast winter wheat genebank collection (opens in new window)

Author(s): Berkner MO, Weise S, Reif JC and Schulthess AW
Published in: Frontiers - Plant Science (Sec. Plant Breeding ), Issue Volume 14 - 2023, 2024, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1270298

"""On the Way to Plant Data Commons - A Genotyping Use Case""" (opens in new window)

Author(s): Manuel Feser, Patrick König, Anne Fiebig, Daniel Arend, Matthias Lange, Uwe Scholz
Published in: Journal of Integrative Bioinformatics, 2022, ISSN 1613-4516
Publisher: Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)
DOI: 10.1515/jib-2022-0033

Updated genebank manuals available on the ECPGR website

Author(s): Katya Uzundzhalieva, Gergana Desheva, Dagmar Janovská, Ludmila Papoušková, Miloš Faltus, Miroslav Hýbl, Zdeněk Beneš, Patrizia Vaccino, Theo v. Hintum, Lise Lykke Steffensen, Maja Boczkowska,Pavol Hauptvogel, Ľubomír Mendel, Martin Gálik, Iveta Čičová, Erika Zetochová, Marcela Gubišová, René Hauptvogel, Marek Varga, Luis Guasch, Isaura Martin, Lucía de la Rosa, Beate Schiersc
Published in: 2024
Publisher: ecpgr

Reports of genebank visits

Author(s): Ulrike Lohwasser, Pavol Hauptvogel, Theo van Hintum, Dagmar Janovská, Ludmila Papoušková, Iveta Čičová, Katya Uzundzhalieva, Gergana Desheva, Isaura Martin, Luis Guasch, John Dickie, Lise Lykke Steffensen, Beate Schierscher-Viret, Patrizia Vaccino, Maja Boczkowska
Published in: 2024
Publisher: ECPGR

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