Quantitative Tomography Using Coupled Physics of Waves

Información del proyecto

QUANTOM

Identificador del acuerdo de subvención: 101001417

DOI

10.3030/101001417

Fecha de la firma de la CE 8 Febrero 2021

Fecha de inicio 1 Junio 2021

Fecha de finalización 30 Noviembre 2026

Financiado con arreglo a

• EXCELLENT SCIENCE - European Research Council (ERC)

Coste total

€ 2 000 000,00

Aportación de la UE

€ 2 000 000,00

Coordinado por

ITA-SUOMEN YLIOPISTO
Finland

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Publicaciones

Conference proceedings (15)

Computationally efficient forward model for photoacoustic tomography

Autores: Teemu Sahlström, Aki Pulkkinen, Jarkko Leskinen, Tanja Tarvainen
Publicado en: Opto-Acoustic Methods and Applications in Biophotonics V, Edición 11923: 1192308, 2021, ISBN 978-1-5106-4713-8
Editor: SPIE
DOI: 10.1117/12.2615855

Diffuse optical tomography using deep learning to marginalize errors due to inaccurate baseline optical parameters in brain imaging

Autores: Meghdoot Mozumder, Pauliina Hirvi, Ilkka Nissilä, Andreas Hauptmann, Jorge Ripoll, David E. Singh
Publicado en: European Conferences on Biomedical Optics 2025, 2025, Página(s) W5B.2, ISBN 978-1-55752-800-1
Editor: Optica Publishing Group
DOI: 10.1364/ecbo.2025.w5b.2

Image reconstruction in quantitative photoacoustic tomography using adaptive optical Monte Carlo

Autores: Niko Hänninen, Aki Pulkkinen, Simon Arridge, Tanja Tarvainen
Publicado en: Photons Plus Ultrasound: Imaging and Sensing, Edición 12379: 1237916, 2023, ISSN 2410-9045
Editor: SPIE
DOI: 10.1117/12.2647252

Comparative Analysis of Acoustic Reconstruction Methods for Chromophore and Oxygenation Quantification in Limited-View 3D Quantitative Photoacoustic Tomography

Autores: Guo Tang, Felix Lucka, Teemu Sahlström, Ben Cox, Tanja Tarvainen, Jan Laufer
Publicado en: European Conferences on Biomedical Optics 2025, 2025, Página(s) S4D.2, ISBN 978-1-55752-800-1
Editor: Optica Publishing Group
DOI: 10.1364/ecbo.2025.s4d.2

Perturbation Monte Carlo in quantitative photoacoustic tomography

Autores: Aki Pulkkinen, Aleksi Leino, Tuomas Lunttila, Meghdoot Mozumder, Tanja Tarvainen
Publicado en: Opto-Acoustic Methods and Applications in Biophotonics V, Edición 11923: 119230B, 2021, ISBN 978-1-5106-4713-8
Editor: SPIE
DOI: 10.1117/12.2615870

Estimation of dielectric parameters in quantitative thermoacoustic tomography

Autores: Teemu Sahlström, Timo Lähivaara, Tanja Tarvainen
Publicado en: European Conferences on Biomedical Optics 2025, 2025, Página(s) Tu2A.40, ISBN 978-1-55752-800-1
Editor: Optica Publishing Group
DOI: 10.1364/ecbo.2025.tu2a.40

SMART-SPI: Towards an Integrated Framework for Advanced Computational Single-Pixel Imaging Systems

Autores: Marcos Obando, Samuel I. Valencia-Zapata, Lindsey Willstatter, Heberley Tobón Maya, Tanja Tarvainen, Stefano Bonora, Jesús Lancis, Enrique Tajahuerce, Felix Lucka
Publicado en: Optica Imaging Congress 2025 (3D, DH, COSI, IS, pcAOP,RadIT), 2025, Página(s) CW1B.3, ISBN 978-1-55752-937-4
Editor: Optica Publishing Group
DOI: 10.1364/cosi.2025.cw1b.3

Utilizing variational autoencoders in photoacoustic tomography

Autores: Teemu Sahlström, Tanja Tarvainen
Publicado en: Photons Plus Ultrasound: Imaging and Sensing 2023, Edición 12379:1237914, 2023
Editor: SPIE
DOI: 10.1117/12.2644801

An adaptive stochastic Gauss-Newton method for optical tomography using the Monte Carlo method

Autores: Jonna Kangasniemi, Meghdoot Mozumder, Aki Pulkkinen, Tanja Tarvainen
Publicado en: European Conferences on Biomedical Optics 2025, 2025, Página(s) W4B.1, ISBN 978-1-55752-800-1
Editor: Optica Publishing Group
DOI: 10.1364/ecbo.2025.w4b.1

Diffuse optical tomography setup using a nanosecond laser

Autores: Meghdoot Mozumder, Jarkko Leskinen, Tanja Tarvainen
Publicado en: Diffuse Optical Spectroscopy and Imaging IX, Edición 12628; 1262820, 2023
Editor: SPIE
DOI: 10.1117/12.2670651

Time-domain diffuse optical tomography with pattern illumination and detection: experimental system

Autores: Giovanna Tramontin Carneiro, Jarjish Rahaman, Meghdoot Mozumder, Tanja Tarvainen, Andrea Farina
Publicado en: European Conferences on Biomedical Optics 2025, 2025, Página(s) Tu1B.4, ISBN 978-1-55752-800-1
Editor: Optica Publishing Group
DOI: 10.1364/ecbo.2025.tu1b.4

Deep learning in photoacoustic tomography utilizing variational autoencoders

Autores: Teemu Sahlström, Tanja Tarvainen
Publicado en: Opto-Acoustic Methods and Applications in Biophotonics VI, Edición 12631: 1263108, 2023
Editor: SPIE
DOI: 10.1117/12.2670860

Compensating modeling errors of diffusion approximation in quantitative photoacoustic tomography using a Bayesian approach

Autores: Niko Hänninen, Aki Pulkkinen, Aleksi Leino, Tanja Tarvainen
Publicado en: Opto-Acoustic Methods and Applications in Biophotonics V, Edición 1192309: 1192309, 2021, ISBN 978-1-5106-4713-8
Editor: SPIE
DOI: 10.1117/12.2615866

One-step estimation of spectral optical parameters in quantitative photoacoustic tomography

Autores: Miika Suhonen, Aki Pulkkinen, Tanja Tarvainen
Publicado en: Opto-Acoustic Methods and Applications in Biophotonics VI, Edición 12631: 126310D, 2023
Editor: SPIE
DOI: 10.1117/12.2675588

Time-domain diffuse optical tomography with pattern illumination and detection: modeling and simulation

Autores: Jarjish Rahaman, Meghdoot Mozumder, Giovanna Tramontin Carneiro, Andrea Farina, Tanja Tarvainen
Publicado en: European Conferences on Biomedical Optics 2025, 2025, Página(s) Th2B.6, ISBN 978-1-55752-800-1
Editor: Optica Publishing Group
DOI: 10.1364/ecbo.2025.th2b.6

Thesis and dissertations (3)

Computational methods for modelling and inverse problem of photoacoustic tomography

Autores: Teemu Sahlström
Publicado en: Publications of the University of Eastern Finland. Dissertations in Science, Forestry and Technology, Edición 30, 2023, ISBN 978-952-61-5174-8
Editor: University of Eastern Finland, Faculty of Science, Forestry and Technology, Department of Technical Physics

Background-oriented schlieren imaging for measuring ultrasound fields

Autores: Eero Koponen
Publicado en: Publications of the University of Eastern Finland. Dissertations in Science, Forestry and Technology, Edición 40, 2024, ISBN 978-952-61-5174-8
Editor: University of Eastern Finland, Faculty of Science, Forestry and Technology, Department of Technical Physics

Image reconstruction and uncertainty quantification in quantitative photoacoustic tomography

Autores: Niko Hänninen
Publicado en: Publications of the University of Eastern Finland. Dissertations in Science, Forestry and Technology, Edición 29, 2023, ISBN 978-952-61-5174-8
Editor: University of Eastern Finland, Faculty of Science, Forestry and Technology, Department of Technical Physics

Peer reviewed articles (24)

Computationally efficient forward model for photoacoustic tomography

Autores: Eero Koponen, Jarkko Leskinen, Tanja Tarvainen, Aki Pulkkinen
Publicado en: The Journal of the Acoustical Society of America, Edición 154(6), 2023, Página(s) 3726-3736, ISSN 1084-7529
Editor: Optical Society of America
DOI: 10.1121/10.0023949

Controlled synthesis and characterization of porous silicon nanoparticles for dynamic nuclear polarization

Autores: Gevin von Witte, Aaron Himmler, Viivi Hyppönen, Jiri Jäntti, Mohammed M. Albannay, Jani O. Moilanen, Matthias Ernst, Vesa-Pekka Lehto, Joakim Riikonen, Sebastian Kozerke, Mikko I. Kettunen, Konstant
Publicado en: Nanoscale, Edición 16, 2024, Página(s) 19385-19399, ISSN 2040-3364
Editor: Royal Society of Chemistry
DOI: 10.1039/d4nr02603a

Diffuse optical tomography of the brain: effects of inaccurate baseline optical parameters and refinements using learned post-processing

Autores: Meghdoot Mozumder, Pauliina Hirvi, Ilkka Nissilä, Andreas Hauptmann, Jorge Ripoll, David E. Singh
Publicado en: Biomedical Optics Express, Edición 15, 2024, Página(s) 4470, ISSN 2156-7085
Editor: The Optical Society
DOI: 10.1364/boe.524245

Stochastic Gauss-Newton method for estimating absorption and scattering in optical tomography with the Monte Carlo method for light transport

Autores: Jonna Kangasniemi, Meghdoot Mozumder, Aki Pulkkinen, Tanja Tarvainen
Publicado en: Biomedical Optics Express, Edición 15, 2024, Página(s) 4925, ISSN 2156-7085
Editor: The Optical Society
DOI: 10.1364/boe.528666

Adaptive stochastic Gauss-Newton with optical Monte Carlo in quantitative photoacoustic tomography

Autores: Niko Hänninen, Aki Pulkkinen, Simon Arridge, Tanja Tarvainen
Publicado en: Journal of Biomedical Optics, Edición 27(8), 2022, Página(s) 083013, ISSN 1560-2281
Editor: SPIE
DOI: 10.1117/1.jbo.27.8.083013

Single-stage approach for estimating optical parameters in spectral quantitative photoacoustic tomography

Autores: Miika Suhonen, Aki Pulkkinen, Tanja Tarvainen
Publicado en: Journal of the Optical Society of America, Edición 41(3), 2024, Página(s) 527-542, ISSN 1084-7529
Editor: Optical Society of America
DOI: 10.1364/josaa.518768

Non-stationary estimation of optical absorption in ultrasound-modulated diffuse optical tomography

Autores: Meghdoot Mozumder, Aku Seppänen, Tanja Tarvainen
Publicado en: Journal of the Optical Society of America A, Edición 42, 2025, Página(s) 1234, ISSN 1084-7529
Editor: Optical Society of America
DOI: 10.1364/josaa.562855

A Bayesian approach for consistent reconstruction of inclusions

Autores: BM Afkham, K Knudsen, AK Rasmussen, T Tarvainen
Publicado en: Inverse Problems, Edición 40, 2024, Página(s) 045004, ISSN 0266-5611
Editor: Institute of Physics Publishing
DOI: 10.1088/1361-6420/ad2531

Eco-friendly preparation of titanium dioxide/carbon nitride nanocomposites for photoelectrocatalytic applications

Autores: Hanna Maltanava, Nikita Belko, Konstantin Tamarov, Niko M. Kinnunen, Pauliina Nevalainen, Martynas Zalieckas, Renata Karpicz, Igor Koshevoy, Dmitry Semenov, Sari Suvanto, Sergei Malykhin, Vesa-Pekka L
Publicado en: Nanoscale Advances, Edición 7, 2025, Página(s) 5601-5611, ISSN 2516-0230
Editor: Royal Society of Chemistry (RSC)
DOI: 10.1039/d5na00478k

Spatial and temporal modulation in time-domain diffuse optical tomography

Autores: Jarjish Rahaman, Meghdoot Mozumder, Andrea Farina, Tanja Tarvainen
Publicado en: Optics Continuum, Edición 4, 2025, Página(s) 2646, ISSN 2770-0208
Editor: Optica Publishing Group
DOI: 10.1364/optcon.568413

Nuclear spin diffusion in dynamic nuclear polarization of crystalline nanoscale silicon particles

Autores: Gevin von Witte, Konstantin Tamarov, Neva Şahin, Aaron Himmler, Vera Ganz, Jani O. Moilanen, Vesa-Pekka Lehto, Grzegorz Kwiatkowski, Sebastian Kozerke, Matthias Ernst
Publicado en: Physical Review Research, Edición 7, 2025, Página(s) 043276, ISSN 2643-1564
Editor: American Physical Society (APS)
DOI: 10.1103/cr6d-m3bf

Temperature-Dependent Dynamic Nuclear Polarization of Diamond

Autores: Gevin von Witte, Aaron Himmler, Konstantin Tamarov, Jani O. Moilanen, Matthias Ernst, Sebastian Kozerke
Publicado en: The Journal of Physical Chemistry C, Edición 129, 2025, Página(s) 12577-12584, ISSN 1932-7447
Editor: American Chemical Society
DOI: 10.1021/acs.jpcc.5c02747

Assembly of fluorophore J-aggregates with nanospacer onto mesoporous nanoparticles for enhanced photoacoustic imaging

Autores: Wujun Xu, Jarkko Leskinen, Teemu Sahlström, Emilia Happonen, Tanja Tarvainen, Vesa-Pekka Lehto
Publicado en: Photoacoustics, Edición 33:100552, 2023, ISSN 2213-5979
Editor: Elsevier GmbH
DOI: 10.1016/j.pacs.2023.100552

Nonlinear estimation of pressure projection of ultrasound fields in background-oriented schlieren imaging

Autores: Eero Koponen, Jarkko Leskinen, Tanja Tarvainen, Aki Pulkkinen
Publicado en: Journal of the Optical Society of America A, Edición 39(4), 2022, Página(s) 552-562, ISSN 1084-7529
Editor: Optical Society of America
DOI: 10.1364/josaa.433762

Benchmark problems for transcranial ultrasound simulation: Intercomparison of compressional wave models

Autores: Jean-Francois Aubry, Oscar Bates, Christian Boehm, Kim Butts Pauly, Douglas Christensen, Carlos Cueto, Pierre Gélat, Lluis Guasch, Jiri Jaros, Yun Jing, Rebecca Jones, Ningrui Li, Patrick Marty, Hazael Montanaro, Esra Neufeld, Samuel Pichardo, Gianmarco Pinton, Aki Pulkkinen, Antonio Stanziola, Axel Thielscher, Bradley Treeby, Elwin van 't Wout
Publicado en: The Journal of the Acoustical Society of America, Edición 152 (2), 2022, Página(s) 1003, ISSN 0001-4966
Editor: Acoustical Society of America
DOI: 10.1121/10.0013426

Digital twins enable full-reference quality assessment of photoacoustic image reconstructions

Autores: Janek Gröhl, Leonid Kunyansky, Jenni Poimala, Thomas R. Else, Francesca Di Cecio, Sarah E. Bohndiek, Ben T. Cox, Andreas Hauptmann
Publicado en: The Journal of the Acoustical Society of America, Edición 158, 2025, Página(s) 590-601, ISSN 1520-8524
Editor: Acoustical Society of America (ASA)
DOI: 10.1121/10.0037188

Utilising nanosecond sources in diffuse optical tomography

Autores: Meghdoot Mozumder, Jarkko Leskinen, Tanja Tarvainen
Publicado en: Measurement Science and Technology, Edición 34 (2), 2022, Página(s) 025901, ISSN 0957-0233
Editor: Institute of Physics and the Physical Society
DOI: 10.1088/1361-6501/ac9e11

A model-based iterative learning approach for diffuse optical tomography

Autores: Meghdoot Mozumder, Andreas Hauptmann, Ilkka Nissiä, Simon R Arridge, Tanja Tarvainen
Publicado en: IEEE Transactions on Medical Imaging, Edición 41(5), 2022, Página(s) 1289-1299, ISSN 0278-0062
Editor: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tmi.2021.3136461

Sparsity promoting reconstructions via hierarchical prior models in diffuse optical tomography

Autores: Manninen, Anssi; Mozumder, Meghdoot; Tarvainen, Tanja; Hauptmann, Andreas
Publicado en: Inverse Problems and Imaging, Edición 18(1), 2024, Página(s) 113-137, ISSN 1930-8337
Editor: American Institute of Mathematical Sciences
DOI: 10.3934/ipi.2023025

Simultaneous estimation of electrical conductivity and permittivity in quantitative thermoacoustic tomography

Autores: Teemu Sahlström, Timo Lähivaara, Tanja Tarvainen
Publicado en: Inverse Problems, Edición 41, 2025, Página(s) 035015, ISSN 0266-5611
Editor: Institute of Physics Publishing
DOI: 10.1088/1361-6420/adb98d

Quantitative photoacoustic tomography: modelling and inverse problems

Autores: Tanja Tarvainen, Ben Cox
Publicado en: Journal of Biomedical Optics, Edición 29(S1), 2023, Página(s) S11509, ISSN 1083-3668
Editor: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.29.s1.s11509

Utilizing Variational Autoencoders in the Bayesian Inverse Problem of Photoacoustic Tomography

Autores: Teemu Sahlström, Tanja Tarvainen
Publicado en: SIAM Journal on Imaging Sciences, Edición 16(1):89-110, 2023, ISSN 1936-4954
Editor: Society for Industrial and Applied Mathematics
DOI: 10.1137/22m1489897

Reconstructing multiple initial pressure and speed of sound distributions simultaneously in photoacoustic tomography

Autores: Miika Suhonen, Felix Lucka, Aki Pulkkinen, Simon Arridge, Ben Cox, Tanja Tarvainen
Publicado en: Photoacoustics, Edición 45, 2025, Página(s) 100748, ISSN 2213-5979
Editor: Elsevier GmbH
DOI: 10.1016/j.pacs.2025.100748

Drug-Free Approach to Regulate Undruggable Proto-Oncogene MYC Using Biomimetic Porous Nanoparticles for Cancer Immunotherapy

Autores: Emilia Happonen, Yijing Dang, Jiajia Wang, Silja Saarela, Minna Sivonen, Mohammed Zakir, Milla-Iida Laari, Yiannis Constantinou, Konstantin Tamarov, Henri Hakkarainen, Ahmed Bisher Montaser, Henri Lei
Publicado en: ACS Applied Materials & Interfaces, Edición 17, 2025, Página(s) 46521-46534, ISSN 1944-8244
Editor: American Chemical Society
DOI: 10.1021/acsami.5c05042

Book chapters (1)

Model-Based Reconstructions for Quantitative Imaging in Photoacoustic Tomography

Autores: Andreas Hauptmann, Tanja Tarvainen
Publicado en: Biomedical Photoacoustics, 2024, Página(s) 133-153, ISBN 978-3-031-61411-8
Editor: Springer Nature Switzerland
DOI: 10.1007/978-3-031-61411-8_4