Quantitative Tomography Using Coupled Physics of Waves

Informacje na temat projektu

QUANTOM

Identyfikator umowy o grant: 101001417

DOI

10.3030/101001417

Data podpisania przez KE 8 Lutego 2021

Data rozpoczęcia 1 Czerwca 2021

Data zakończenia 30 Listopada 2026

Finansowanie w ramach

• EXCELLENT SCIENCE - European Research Council (ERC)

Koszt całkowity

€ 2 000 000,00

Wkład UE

€ 2 000 000,00

Koordynowany przez

ITA-SUOMEN YLIOPISTO
Finland

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Publikacje

Conference proceedings (15)

Computationally efficient forward model for photoacoustic tomography

Autorzy: Teemu Sahlström, Aki Pulkkinen, Jarkko Leskinen, Tanja Tarvainen
Opublikowane w: Opto-Acoustic Methods and Applications in Biophotonics V, Numer 11923: 1192308, 2021, ISBN 978-1-5106-4713-8
Wydawca: SPIE
DOI: 10.1117/12.2615855

Diffuse optical tomography using deep learning to marginalize errors due to inaccurate baseline optical parameters in brain imaging

Autorzy: Meghdoot Mozumder, Pauliina Hirvi, Ilkka Nissilä, Andreas Hauptmann, Jorge Ripoll, David E. Singh
Opublikowane w: European Conferences on Biomedical Optics 2025, 2025, Strona(/y) W5B.2, ISBN 978-1-55752-800-1
Wydawca: Optica Publishing Group
DOI: 10.1364/ecbo.2025.w5b.2

Image reconstruction in quantitative photoacoustic tomography using adaptive optical Monte Carlo

Autorzy: Niko Hänninen, Aki Pulkkinen, Simon Arridge, Tanja Tarvainen
Opublikowane w: Photons Plus Ultrasound: Imaging and Sensing, Numer 12379: 1237916, 2023, ISSN 2410-9045
Wydawca: SPIE
DOI: 10.1117/12.2647252

Comparative Analysis of Acoustic Reconstruction Methods for Chromophore and Oxygenation Quantification in Limited-View 3D Quantitative Photoacoustic Tomography

Autorzy: Guo Tang, Felix Lucka, Teemu Sahlström, Ben Cox, Tanja Tarvainen, Jan Laufer
Opublikowane w: European Conferences on Biomedical Optics 2025, 2025, Strona(/y) S4D.2, ISBN 978-1-55752-800-1
Wydawca: Optica Publishing Group
DOI: 10.1364/ecbo.2025.s4d.2

Perturbation Monte Carlo in quantitative photoacoustic tomography

Autorzy: Aki Pulkkinen, Aleksi Leino, Tuomas Lunttila, Meghdoot Mozumder, Tanja Tarvainen
Opublikowane w: Opto-Acoustic Methods and Applications in Biophotonics V, Numer 11923: 119230B, 2021, ISBN 978-1-5106-4713-8
Wydawca: SPIE
DOI: 10.1117/12.2615870

Estimation of dielectric parameters in quantitative thermoacoustic tomography

Autorzy: Teemu Sahlström, Timo Lähivaara, Tanja Tarvainen
Opublikowane w: European Conferences on Biomedical Optics 2025, 2025, Strona(/y) Tu2A.40, ISBN 978-1-55752-800-1
Wydawca: Optica Publishing Group
DOI: 10.1364/ecbo.2025.tu2a.40

SMART-SPI: Towards an Integrated Framework for Advanced Computational Single-Pixel Imaging Systems

Autorzy: Marcos Obando, Samuel I. Valencia-Zapata, Lindsey Willstatter, Heberley Tobón Maya, Tanja Tarvainen, Stefano Bonora, Jesús Lancis, Enrique Tajahuerce, Felix Lucka
Opublikowane w: Optica Imaging Congress 2025 (3D, DH, COSI, IS, pcAOP,RadIT), 2025, Strona(/y) CW1B.3, ISBN 978-1-55752-937-4
Wydawca: Optica Publishing Group
DOI: 10.1364/cosi.2025.cw1b.3

Utilizing variational autoencoders in photoacoustic tomography

Autorzy: Teemu Sahlström, Tanja Tarvainen
Opublikowane w: Photons Plus Ultrasound: Imaging and Sensing 2023, Numer 12379:1237914, 2023
Wydawca: SPIE
DOI: 10.1117/12.2644801

An adaptive stochastic Gauss-Newton method for optical tomography using the Monte Carlo method

Autorzy: Jonna Kangasniemi, Meghdoot Mozumder, Aki Pulkkinen, Tanja Tarvainen
Opublikowane w: European Conferences on Biomedical Optics 2025, 2025, Strona(/y) W4B.1, ISBN 978-1-55752-800-1
Wydawca: Optica Publishing Group
DOI: 10.1364/ecbo.2025.w4b.1

Diffuse optical tomography setup using a nanosecond laser

Autorzy: Meghdoot Mozumder, Jarkko Leskinen, Tanja Tarvainen
Opublikowane w: Diffuse Optical Spectroscopy and Imaging IX, Numer 12628; 1262820, 2023
Wydawca: SPIE
DOI: 10.1117/12.2670651

Time-domain diffuse optical tomography with pattern illumination and detection: experimental system

Autorzy: Giovanna Tramontin Carneiro, Jarjish Rahaman, Meghdoot Mozumder, Tanja Tarvainen, Andrea Farina
Opublikowane w: European Conferences on Biomedical Optics 2025, 2025, Strona(/y) Tu1B.4, ISBN 978-1-55752-800-1
Wydawca: Optica Publishing Group
DOI: 10.1364/ecbo.2025.tu1b.4

Deep learning in photoacoustic tomography utilizing variational autoencoders

Autorzy: Teemu Sahlström, Tanja Tarvainen
Opublikowane w: Opto-Acoustic Methods and Applications in Biophotonics VI, Numer 12631: 1263108, 2023
Wydawca: SPIE
DOI: 10.1117/12.2670860

Compensating modeling errors of diffusion approximation in quantitative photoacoustic tomography using a Bayesian approach

Autorzy: Niko Hänninen, Aki Pulkkinen, Aleksi Leino, Tanja Tarvainen
Opublikowane w: Opto-Acoustic Methods and Applications in Biophotonics V, Numer 1192309: 1192309, 2021, ISBN 978-1-5106-4713-8
Wydawca: SPIE
DOI: 10.1117/12.2615866

One-step estimation of spectral optical parameters in quantitative photoacoustic tomography

Autorzy: Miika Suhonen, Aki Pulkkinen, Tanja Tarvainen
Opublikowane w: Opto-Acoustic Methods and Applications in Biophotonics VI, Numer 12631: 126310D, 2023
Wydawca: SPIE
DOI: 10.1117/12.2675588

Time-domain diffuse optical tomography with pattern illumination and detection: modeling and simulation

Autorzy: Jarjish Rahaman, Meghdoot Mozumder, Giovanna Tramontin Carneiro, Andrea Farina, Tanja Tarvainen
Opublikowane w: European Conferences on Biomedical Optics 2025, 2025, Strona(/y) Th2B.6, ISBN 978-1-55752-800-1
Wydawca: Optica Publishing Group
DOI: 10.1364/ecbo.2025.th2b.6

Thesis and dissertations (3)

Computational methods for modelling and inverse problem of photoacoustic tomography

Autorzy: Teemu Sahlström
Opublikowane w: Publications of the University of Eastern Finland. Dissertations in Science, Forestry and Technology, Numer 30, 2023, ISBN 978-952-61-5174-8
Wydawca: University of Eastern Finland, Faculty of Science, Forestry and Technology, Department of Technical Physics

Background-oriented schlieren imaging for measuring ultrasound fields

Autorzy: Eero Koponen
Opublikowane w: Publications of the University of Eastern Finland. Dissertations in Science, Forestry and Technology, Numer 40, 2024, ISBN 978-952-61-5174-8
Wydawca: University of Eastern Finland, Faculty of Science, Forestry and Technology, Department of Technical Physics

Image reconstruction and uncertainty quantification in quantitative photoacoustic tomography

Autorzy: Niko Hänninen
Opublikowane w: Publications of the University of Eastern Finland. Dissertations in Science, Forestry and Technology, Numer 29, 2023, ISBN 978-952-61-5174-8
Wydawca: University of Eastern Finland, Faculty of Science, Forestry and Technology, Department of Technical Physics

Peer reviewed articles (24)

Computationally efficient forward model for photoacoustic tomography

Autorzy: Eero Koponen, Jarkko Leskinen, Tanja Tarvainen, Aki Pulkkinen
Opublikowane w: The Journal of the Acoustical Society of America, Numer 154(6), 2023, Strona(/y) 3726-3736, ISSN 1084-7529
Wydawca: Optical Society of America
DOI: 10.1121/10.0023949

Controlled synthesis and characterization of porous silicon nanoparticles for dynamic nuclear polarization

Autorzy: Gevin von Witte, Aaron Himmler, Viivi Hyppönen, Jiri Jäntti, Mohammed M. Albannay, Jani O. Moilanen, Matthias Ernst, Vesa-Pekka Lehto, Joakim Riikonen, Sebastian Kozerke, Mikko I. Kettunen, Konstant
Opublikowane w: Nanoscale, Numer 16, 2024, Strona(/y) 19385-19399, ISSN 2040-3364
Wydawca: Royal Society of Chemistry
DOI: 10.1039/d4nr02603a

Diffuse optical tomography of the brain: effects of inaccurate baseline optical parameters and refinements using learned post-processing

Autorzy: Meghdoot Mozumder, Pauliina Hirvi, Ilkka Nissilä, Andreas Hauptmann, Jorge Ripoll, David E. Singh
Opublikowane w: Biomedical Optics Express, Numer 15, 2024, Strona(/y) 4470, ISSN 2156-7085
Wydawca: The Optical Society
DOI: 10.1364/boe.524245

Stochastic Gauss-Newton method for estimating absorption and scattering in optical tomography with the Monte Carlo method for light transport

Autorzy: Jonna Kangasniemi, Meghdoot Mozumder, Aki Pulkkinen, Tanja Tarvainen
Opublikowane w: Biomedical Optics Express, Numer 15, 2024, Strona(/y) 4925, ISSN 2156-7085
Wydawca: The Optical Society
DOI: 10.1364/boe.528666

Adaptive stochastic Gauss-Newton with optical Monte Carlo in quantitative photoacoustic tomography

Autorzy: Niko Hänninen, Aki Pulkkinen, Simon Arridge, Tanja Tarvainen
Opublikowane w: Journal of Biomedical Optics, Numer 27(8), 2022, Strona(/y) 083013, ISSN 1560-2281
Wydawca: SPIE
DOI: 10.1117/1.jbo.27.8.083013

Single-stage approach for estimating optical parameters in spectral quantitative photoacoustic tomography

Autorzy: Miika Suhonen, Aki Pulkkinen, Tanja Tarvainen
Opublikowane w: Journal of the Optical Society of America, Numer 41(3), 2024, Strona(/y) 527-542, ISSN 1084-7529
Wydawca: Optical Society of America
DOI: 10.1364/josaa.518768

Non-stationary estimation of optical absorption in ultrasound-modulated diffuse optical tomography

Autorzy: Meghdoot Mozumder, Aku Seppänen, Tanja Tarvainen
Opublikowane w: Journal of the Optical Society of America A, Numer 42, 2025, Strona(/y) 1234, ISSN 1084-7529
Wydawca: Optical Society of America
DOI: 10.1364/josaa.562855

A Bayesian approach for consistent reconstruction of inclusions

Autorzy: BM Afkham, K Knudsen, AK Rasmussen, T Tarvainen
Opublikowane w: Inverse Problems, Numer 40, 2024, Strona(/y) 045004, ISSN 0266-5611
Wydawca: Institute of Physics Publishing
DOI: 10.1088/1361-6420/ad2531

Eco-friendly preparation of titanium dioxide/carbon nitride nanocomposites for photoelectrocatalytic applications

Autorzy: Hanna Maltanava, Nikita Belko, Konstantin Tamarov, Niko M. Kinnunen, Pauliina Nevalainen, Martynas Zalieckas, Renata Karpicz, Igor Koshevoy, Dmitry Semenov, Sari Suvanto, Sergei Malykhin, Vesa-Pekka L
Opublikowane w: Nanoscale Advances, Numer 7, 2025, Strona(/y) 5601-5611, ISSN 2516-0230
Wydawca: Royal Society of Chemistry (RSC)
DOI: 10.1039/d5na00478k

Spatial and temporal modulation in time-domain diffuse optical tomography

Autorzy: Jarjish Rahaman, Meghdoot Mozumder, Andrea Farina, Tanja Tarvainen
Opublikowane w: Optics Continuum, Numer 4, 2025, Strona(/y) 2646, ISSN 2770-0208
Wydawca: Optica Publishing Group
DOI: 10.1364/optcon.568413

Nuclear spin diffusion in dynamic nuclear polarization of crystalline nanoscale silicon particles

Autorzy: Gevin von Witte, Konstantin Tamarov, Neva Şahin, Aaron Himmler, Vera Ganz, Jani O. Moilanen, Vesa-Pekka Lehto, Grzegorz Kwiatkowski, Sebastian Kozerke, Matthias Ernst
Opublikowane w: Physical Review Research, Numer 7, 2025, Strona(/y) 043276, ISSN 2643-1564
Wydawca: American Physical Society (APS)
DOI: 10.1103/cr6d-m3bf

Temperature-Dependent Dynamic Nuclear Polarization of Diamond

Autorzy: Gevin von Witte, Aaron Himmler, Konstantin Tamarov, Jani O. Moilanen, Matthias Ernst, Sebastian Kozerke
Opublikowane w: The Journal of Physical Chemistry C, Numer 129, 2025, Strona(/y) 12577-12584, ISSN 1932-7447
Wydawca: American Chemical Society
DOI: 10.1021/acs.jpcc.5c02747

Assembly of fluorophore J-aggregates with nanospacer onto mesoporous nanoparticles for enhanced photoacoustic imaging

Autorzy: Wujun Xu, Jarkko Leskinen, Teemu Sahlström, Emilia Happonen, Tanja Tarvainen, Vesa-Pekka Lehto
Opublikowane w: Photoacoustics, Numer 33:100552, 2023, ISSN 2213-5979
Wydawca: Elsevier GmbH
DOI: 10.1016/j.pacs.2023.100552

Nonlinear estimation of pressure projection of ultrasound fields in background-oriented schlieren imaging

Autorzy: Eero Koponen, Jarkko Leskinen, Tanja Tarvainen, Aki Pulkkinen
Opublikowane w: Journal of the Optical Society of America A, Numer 39(4), 2022, Strona(/y) 552-562, ISSN 1084-7529
Wydawca: Optical Society of America
DOI: 10.1364/josaa.433762

Benchmark problems for transcranial ultrasound simulation: Intercomparison of compressional wave models

Autorzy: Jean-Francois Aubry, Oscar Bates, Christian Boehm, Kim Butts Pauly, Douglas Christensen, Carlos Cueto, Pierre Gélat, Lluis Guasch, Jiri Jaros, Yun Jing, Rebecca Jones, Ningrui Li, Patrick Marty, Hazael Montanaro, Esra Neufeld, Samuel Pichardo, Gianmarco Pinton, Aki Pulkkinen, Antonio Stanziola, Axel Thielscher, Bradley Treeby, Elwin van 't Wout
Opublikowane w: The Journal of the Acoustical Society of America, Numer 152 (2), 2022, Strona(/y) 1003, ISSN 0001-4966
Wydawca: Acoustical Society of America
DOI: 10.1121/10.0013426

Digital twins enable full-reference quality assessment of photoacoustic image reconstructions

Autorzy: Janek Gröhl, Leonid Kunyansky, Jenni Poimala, Thomas R. Else, Francesca Di Cecio, Sarah E. Bohndiek, Ben T. Cox, Andreas Hauptmann
Opublikowane w: The Journal of the Acoustical Society of America, Numer 158, 2025, Strona(/y) 590-601, ISSN 1520-8524
Wydawca: Acoustical Society of America (ASA)
DOI: 10.1121/10.0037188

Utilising nanosecond sources in diffuse optical tomography

Autorzy: Meghdoot Mozumder, Jarkko Leskinen, Tanja Tarvainen
Opublikowane w: Measurement Science and Technology, Numer 34 (2), 2022, Strona(/y) 025901, ISSN 0957-0233
Wydawca: Institute of Physics and the Physical Society
DOI: 10.1088/1361-6501/ac9e11

A model-based iterative learning approach for diffuse optical tomography

Autorzy: Meghdoot Mozumder, Andreas Hauptmann, Ilkka Nissiä, Simon R Arridge, Tanja Tarvainen
Opublikowane w: IEEE Transactions on Medical Imaging, Numer 41(5), 2022, Strona(/y) 1289-1299, ISSN 0278-0062
Wydawca: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tmi.2021.3136461

Sparsity promoting reconstructions via hierarchical prior models in diffuse optical tomography

Autorzy: Manninen, Anssi; Mozumder, Meghdoot; Tarvainen, Tanja; Hauptmann, Andreas
Opublikowane w: Inverse Problems and Imaging, Numer 18(1), 2024, Strona(/y) 113-137, ISSN 1930-8337
Wydawca: American Institute of Mathematical Sciences
DOI: 10.3934/ipi.2023025

Simultaneous estimation of electrical conductivity and permittivity in quantitative thermoacoustic tomography

Autorzy: Teemu Sahlström, Timo Lähivaara, Tanja Tarvainen
Opublikowane w: Inverse Problems, Numer 41, 2025, Strona(/y) 035015, ISSN 0266-5611
Wydawca: Institute of Physics Publishing
DOI: 10.1088/1361-6420/adb98d

Quantitative photoacoustic tomography: modelling and inverse problems

Autorzy: Tanja Tarvainen, Ben Cox
Opublikowane w: Journal of Biomedical Optics, Numer 29(S1), 2023, Strona(/y) S11509, ISSN 1083-3668
Wydawca: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.29.s1.s11509

Utilizing Variational Autoencoders in the Bayesian Inverse Problem of Photoacoustic Tomography

Autorzy: Teemu Sahlström, Tanja Tarvainen
Opublikowane w: SIAM Journal on Imaging Sciences, Numer 16(1):89-110, 2023, ISSN 1936-4954
Wydawca: Society for Industrial and Applied Mathematics
DOI: 10.1137/22m1489897

Reconstructing multiple initial pressure and speed of sound distributions simultaneously in photoacoustic tomography

Autorzy: Miika Suhonen, Felix Lucka, Aki Pulkkinen, Simon Arridge, Ben Cox, Tanja Tarvainen
Opublikowane w: Photoacoustics, Numer 45, 2025, Strona(/y) 100748, ISSN 2213-5979
Wydawca: Elsevier GmbH
DOI: 10.1016/j.pacs.2025.100748

Drug-Free Approach to Regulate Undruggable Proto-Oncogene MYC Using Biomimetic Porous Nanoparticles for Cancer Immunotherapy

Autorzy: Emilia Happonen, Yijing Dang, Jiajia Wang, Silja Saarela, Minna Sivonen, Mohammed Zakir, Milla-Iida Laari, Yiannis Constantinou, Konstantin Tamarov, Henri Hakkarainen, Ahmed Bisher Montaser, Henri Lei
Opublikowane w: ACS Applied Materials & Interfaces, Numer 17, 2025, Strona(/y) 46521-46534, ISSN 1944-8244
Wydawca: American Chemical Society
DOI: 10.1021/acsami.5c05042

Book chapters (1)

Model-Based Reconstructions for Quantitative Imaging in Photoacoustic Tomography

Autorzy: Andreas Hauptmann, Tanja Tarvainen
Opublikowane w: Biomedical Photoacoustics, 2024, Strona(/y) 133-153, ISBN 978-3-031-61411-8
Wydawca: Springer Nature Switzerland
DOI: 10.1007/978-3-031-61411-8_4