Innovations to accelerate vaccine development and manufacture

Informations projet

Inno4Vac

N° de convention de subvention: 101007799

DOI

10.3030/101007799

Date de signature de la CE 19 Juillet 2021

Date de début 1 Septembre 2021

Date de fin 28 Février 2027

Financé au titre de

• SOCIETAL CHALLENGES - Health, demographic change and well-being

Coût total

€ 39 342 552,00

Contribution de l’UE

€ 18 600 000,00

Coordonné par

EUROPEAN VACCINE INITIATIVE E.V
Germany

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (6)

Scientific consensus docon new challenge influenza strains
Roadmap document prioritizing RSV immune assays for development and standardization
Report of regulatory workshop 1
Prepare SOPs for handling open calls process
Workshops with stakeholders implemented
Open call process launched

Other (1)

Launch of web site

Publications

Non-peer reviewed articles (6)

Training data composition determines machine learning generalization and biological rule discovery

Auteurs: Eugen Ursu, Aygul Minnegalieva, Puneet Rawat, Maria Chernigovskaya, Robi Tacutu, Geir Kjetil Sandve, Philippe A. Robert, Victor Greiff
Publié dans: bioRxiv, 2024, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.06.17.599333

Simulation of adaptive immune receptors and repertoires with complex immune information to guide the development and benchmarking of AIRR machine learning

Auteurs: Maria Chernigovskaya, Milena Pavlović, Chakravarthi Kanduri, Sofie Gielis, Philippe A. Robert, Lonneke Scheffer, Andrei Slabodkin, Ingrid Hobæk Haff, Pieter Meysman, Gur Yaari, Geir Kjetil Sandve, Victor Greiff
Publié dans: bioRxiv, 2023, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2023.10.20.562936

Systematic benchmarking of mass spectrometry-based antibody sequencing reveals methodological biases

Auteurs: Maria Chernigovskaya, Khang Lê Quý, Maria Stensland, Sachin Singh, Rowan Nelson, Melih Yilmaz, Konstantinos Kalogeropoulos, Pavel Sinitcyn, Anand Patel, Natalie Castellana, Stefano Bonissone, Stian Foss, Jan Terje Andersen, Geir Kjetil Sandve, Timothy Patrick Jenkins, William S. Noble, Tuula A. Nyman, Igor Snapkow, Victor Greiff
Publié dans: bioRxiv, 2024, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.11.11.622451

Weakly supervised identification and generation of adaptive immune receptor sequences associated with immune disease status

Auteurs: Andrei Slabodkin, Ludvig M. Sollid, Geir Kjetil Sandve, Philippe A. Robert, Victor Greiff
Publié dans: bioRxiv, 2024, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2023.09.24.558823

InSilicoSeq 2.0: Simulating realistic amplicon-based sequence reads

Auteurs: Stefan H. Lelieveld, Thijs Maas, Tessa C. X. Duk, Hadrien Gourlé, Henk-Jan van den Ham
Publié dans: bioRxiv, 2024, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.02.16.580469

Identification of a type 1 diabetes-associated T cell receptor repertoire signature from the human peripheral blood

Auteurs: Puneet Rawat, Melanie R. Shapiro, Leeana D. Peters, Michael Widrich, Koshlan Mayer-Blackwell, Keshav Motwani, Milena Pavlović, Ghadi al Hajj, Amanda L. Posgai, Chakravarthi Kanduri, Giulio Isacchini, Maria Chernigovskaya, Lonneke Scheffer, Kartik Motwani, Leandro Octavio Balzano-Nogueira, Camryn M. Pettenger-Willey, Sebastiaan Valkiers, Laura M. Jacobsen, Michael J. Haller, Desmond A. Schatz, Cli
Publié dans: medRxiv, 2025, ISSN 3067-2007
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.12.10.24318751

Peer reviewed articles (24)

Reading the repertoire: Progress in adaptive immune receptor analysis using machine learning

Auteurs: Timothy J. O’Donnell, Chakravarthi Kanduri, Giulio Isacchini, Julien P. Limenitakis, Rebecca A. Brachman, Raymond A. Alvarez, Ingrid H. Haff, Geir K. Sandve, Victor Greiff
Publié dans: Cell Systems, Numéro 15, 2024, Page(s) 1168-1189, ISSN 2405-4712
Éditeur: Elsevier BV
DOI: 10.1016/j.cels.2024.11.006

Symptoms and adverse events in controlled human infection models

Auteurs: Karen Götz, Poleta Luga, Jörg Rengel, Mei Masur, Marcela Juárez-Hernández, Isabelle Bekeredjian-Ding
Publié dans: Frontiers in Medicine, Numéro 12, 2025, ISSN 2296-858X
Éditeur: Frontiers Media SA
DOI: 10.3389/fmed.2025.1578560

Comparison of air-liquid interface transwell and airway organoid models for human respiratory virus infection studies

Auteurs: Camilla T. Ekanger, Nilima Dinesh Kumar, Rosanne W. Koutstaal, Fan Zhou, Martin Beukema, Joanna Waldock, Simon P. Jochems, Noa Mulder, Cécile A. C. M. van Els, Othmar G. Engelhardt, Nathalie Mantel, Kevin P. Buno, Karl Albert Brokstad, Agnete S. T. Engelsen, Rebecca J. Cox, Barbro N. Melgert, Anke L. W. Huckriede, Puck B. van Kasteren
Publié dans: Frontiers in Immunology, Numéro 16, 2025, ISSN 1664-3224
Éditeur: Frontiers Media SA
DOI: 10.3389/fimmu.2025.1532144

Inno4Vac Workshop Report Part 1: Controlled Human Influenza Virus Infection Model (CHIVIM) Strain Selection and Immune Assays for CHIVIM Studies, November 2021, MHRA, UK

Auteurs: Joanna Waldock, Rebecca J. Cox, Christopher Chiu, Kanta Subbarao, Adrian Wildfire, Wendy Barclay, Puck B. van Kasteren, John McCauley, Colin A. Russell, Derek Smith, Ryan S. Thwaites, John S. Tregoning, Othmar G. Engelhardt
Publié dans: Influenza and Other Respiratory Viruses, Numéro 18, 2024, ISSN 1750-2640
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/irv.70014

Advancing regulatory dialogue: In silico models for improved vaccine biomanufacturing - an expert meeting report

Auteurs: Irina Meln, Wim Van Molle, Mónica Perea Vélez, Greger Abrahamsen, Koen Brusselmans, Eric Calvosa, Antonio Gaetano Cardillo, Didier Clénet, Caroline Forestieri, Krist V. Gernaey, Marcel Hoefnagel, John Bagterp Jorgensen, Pierre Lebrun, Laurent Natalis, Bernt Nilsson, Volker Öppling, Julius Carl Pollinger, Andrea C.M.E. Rayat, Daniel Reem, Michelle Rubbrecht, Johannes Schmölder, Timothy Schofie
Publié dans: Vaccine, Numéro 56, 2025, Page(s) 127170, ISSN 0264-410X
Éditeur: Elsevier BV
DOI: 10.1016/j.vaccine.2025.127170

CADET-Julia: Efficient and versatile, open-source simulator for batch chromatography in Julia

Auteurs: Jesper Frandsen, Jan Michael Breuer, Johannes Schmölder, Jakob Kjøbsted Huusom, Krist V. Gernaey, Jens Abildskov, Eric von Lieres
Publié dans: Computers & Chemical Engineering, Numéro 192, 2024, Page(s) 108913, ISSN 0098-1354
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.compchemeng.2024.108913

Fourth Controlled Human Infection Model (CHIM) meeting – CHIMs in endemic countries, May 22–23, 2023

Auteurs: Melissa Kapulu, Lucinda Manda-Taylor, Shobana Balasingam, Gary Means, Mikal Ayiro Malungu, Philip Bejon, Primus Che Chi, Christopher Chiu, E. Chandler Church, Rodrigo Correa-Oliveira, Nicholas Day, Anna Durbin, Moses Egesa, Claudia Emerson, Kondwani Jambo, Roli Mathur, Wolfram Metzger, Noni Mumba, Winfred Nazziwa, Ally Olotu, Jacqueline Rodgers, Frank Sinyiza, Kawsar Talaat, Ingrid Kamerling, Char
Publié dans: Biologicals, Numéro 85, 2024, Page(s) 101747, ISSN 1045-1056
Éditeur: Academic Press
DOI: 10.1016/j.biologicals.2024.101747

Solving crystallization/precipitation population balance models in CADET, part I: Nucleation growth and growth rate dispersion in batch and continuous modes on nonuniform grids

Auteurs: Wendi Zhang, Todd Przybycien, Johannes Schmölder, Samuel Leweke, Eric von Lieres
Publié dans: Computers & Chemical Engineering, Numéro 183, 2024, Page(s) 108612, ISSN 0098-1354
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.compchemeng.2024.108612

Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profiling

Auteurs: Khang Lê Quý, Maria Chernigovskaya, Maria Stensland, Sachin Singh, Jinwoo Leem, Santiago Revale, David A. Yadin, Francesca L. Nice, Chelsea Povall, Danielle H. Minns, Jacob D. Galson, Tuula A. Nyman, Igor Snapkow, Victor Greiff
Publié dans: npj Systems Biology and Applications, Numéro 10, 2024, ISSN 2056-7189
Éditeur: Springer Nature
DOI: 10.1038/s41540-024-00402-z

NetTCR-struc, a structure driven approach for prediction of TCR-pMHC interactions

Auteurs: Sebastian N. Deleuran, Morten Nielsen
Publié dans: Frontiers in Immunology, Numéro 16, 2025, ISSN 1664-3224
Éditeur: Frontiers Media SA
DOI: 10.3389/fimmu.2025.1616328

Biophysical cartography of the native and human-engineered antibody landscapes quantifies the plasticity of antibody developability

Auteurs: Habib Bashour, Eva Smorodina, Matteo Pariset, Jahn Zhong, Rahmad Akbar, Maria Chernigovskaya, Khang Lê Quý, Igor Snapkow, Puneet Rawat, Konrad Krawczyk, Geir Kjetil Sandve, Jose Gutierrez-Marcos, Daniel Nakhaee-Zadeh Gutierrez, Jan Terje Andersen, Victor Greiff
Publié dans: Communications Biology, Numéro 7, 2024, ISSN 2399-3642
Éditeur: Springer Nature
DOI: 10.1038/s42003-024-06561-3

How to develop a controlled human infection model for Clostridioides difficile

Auteurs: Annefleur D.O. Hensen, Maria J.G.T. Vehreschild, Dale N. Gerding, Oleg Krut, Wilbur Chen, Vincent B. Young, Saul Tzipori, Philipp Solbach, Malick Mahdi Gibani, Christopher Chiu, Sigrid C.J. de Keersmaecker, Dileep Dasyam, Sandra Morel, Jeanne-Marie Devaster, Nicoletta Corti, Ed J. Kuijper, Meta Roestenberg, Wiep Klaas Smits
Publié dans: Clinical Microbiology and Infection, Numéro 31, 2025, Page(s) 373-379, ISSN 1198-743X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1016/j.cmi.2024.08.025

High-Performance C++ and Julia solvers in CADET for weakly and strongly coupled continuous chromatography problems

Auteurs: Jesper Frandsen, Jan Michael Breuer, Johannes Schmölder, Jens Abildskov, Jakob Kjøbsted Huusom, Krist V. Gernaey, Eric von Lieres
Publié dans: Computers & Chemical Engineering, Numéro 202, 2025, Page(s) 109295, ISSN 0098-1354
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.compchemeng.2025.109295

Organ-on-chip models for infectious disease research

Auteurs: Raquel Alonso-Roman, Alexander S. Mosig, Marc Thilo Figge, Kai Papenfort, Christian Eggeling, Felix H. Schacher, Bernhard Hube, Mark S. Gresnigt
Publié dans: Nature Microbiology, Numéro 9, 2024, Page(s) 891-904, ISSN 2058-5276
Éditeur: Nature Microbiology
DOI: 10.1038/s41564-024-01645-6

Hybrid Optimization Methods for Parameter Estimation of Reactive Transport Systems

Auteurs: Marcus Johan Schytt, Halldór Gauti Pétursson, John Bagterp Jørgensen
Publié dans: IFAC-PapersOnLine, Numéro 59, 2025, Page(s) 163-168, ISSN 2405-8963
Éditeur: Elsevier BV
DOI: 10.1016/j.ifacol.2025.07.139

Accelerating vaccine manufacturing development through model-based approaches: current advances and future opportunities

Auteurs: Elham Ramin, Antonio Gaetano Cardillo, Reinhard Liebers, Johannes Schmölder, Eric von Lieres, Wim Van Molle, Bastian Niebel, Laurent Natalis, Irina Meln, Mónica Perea-Vélez, Didier Clénet, John Bagterp Jørgensen, Bernt Nilsson, Daniel G. Bracewell, Krist V. Gernaey
Publié dans: Current Opinion in Chemical Engineering, Numéro 43, 2024, Page(s) 100998, ISSN 2211-3398
Éditeur: Elsevier BV
DOI: 10.1016/j.coche.2023.100998

Regulatory workshop on challenge strain development and GMP manufacture – A stakeholder meeting report

Auteurs: Nicoletta Corti, Christopher Chiu, Rebecca J. Cox, Clarisse Demont, Jeanne-Marie Devaster, Othmar G. Engelhardt, Andrew Gorringe, Khaole Hassan, Marcel Hoefnagel, Ingrid Kamerling, Oleg Krut, Chelsea Lane, Reinhard Liebers, Catherine Luke, Wim Van Molle, Sandra Morel, Pieter Neels, Meta Roestenberg, Michelle Rubbrecht, Wiep Klaas Smits, Daniel Stoughton, Kawsar Talaat, Maria J.G.T. Vehreschild, Ad
Publié dans: Biologicals, Numéro 85, 2024, Page(s) 101746, ISSN 1045-1056
Éditeur: Academic Press
DOI: 10.1016/j.biologicals.2024.101746

Solving crystallization/precipitation population balance models in CADET, Part II: Size-based Smoluchowski coagulation and fragmentation equations in batch and continuous modes

Auteurs: Wendi Zhang, Todd Przybycien, Jan Michael Breuer, Eric von Lieres
Publié dans: Computers & Chemical Engineering, Numéro 192, 2024, Page(s) 108860, ISSN 0098-1354
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.compchemeng.2024.108860

Inno4Vac Workshop Report Part 2: RSV‐Controlled Human Infection Model (CHIM) Strain Selection and Immune Assays for RSV CHIM Studies, November 2021, MHRA, UK

Auteurs: Joanna Waldock, Rebecca J. Cox, Othmar G. Engelhardt, Stephanie Ascough, Albert Osterhaus, Guus F. Rimmelzwaan, Martin Ludlow, John S. Tregoning, Jacqueline U. McDonald, Ursula J. Buchholz, Rienk E. Jeeninga, Charles. Sande, Christopher Chiu
Publié dans: Influenza and Other Respiratory Viruses, Numéro 18, 2024, ISSN 1750-2640
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/irv.70013

Ethical approval for controlled human infectious model clinical trial protocols – A workshop report

Auteurs: Euzebiusz Jamrozik, Katherine Littler, Irina Meln, Wim Van Molle, Sandra Morel, Ole F. Olesen, Michelle Rubbrecht, Shobana Balasingam, Pieter Neels
Publié dans: Biologicals, Numéro 85, 2024, Page(s) 101748, ISSN 1045-1056
Éditeur: Academic Press
DOI: 10.1016/j.biologicals.2024.101748

Spatial discontinuous Galerkin spectral element method for a family of chromatography models in CADET

Auteurs: Jan Michael Breuer, Samuel Leweke, Johannes Schmölder, Gregor Gassner, Eric von Lieres
Publié dans: Computers & Chemical Engineering, 2023, Page(s) 108340, ISSN 0098-1354
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.compchemeng.2023.108340

Fourth Controlled Human Infection Model (CHIM) meeting, CHIM regulatory issues, May 24, 2023

Auteurs: Marco Cavaleri, David Kaslow, Eric Boateng, Wilbur H. Chen, Christopher Chiu, Robert K.M. Choy, Rodrigo Correa-Oliveira, Anna Durbin, Moses Egesa, Malick Gibani, Melissa Kapulu, Melba Katindi, Ally Olotu, Pongphaya Pongsuwan, Michelo Simuyandi, Bruno Speder, Kawsar R. Talaat, Charlie Weller, Bridget Wills, Marc Baay, Shobana Balasingam, Ole F. Olesen, Pieter Neels
Publié dans: Biologicals, Numéro 85, 2024, Page(s) 101745, ISSN 1045-1056
Éditeur: Academic Press
DOI: 10.1016/j.biologicals.2024.101745

Immunocompetent PDMS‐Free Organ‐on‐Chip Model of Cervical Cancer Integrating Patient‐Specific Cervical Fibroblasts and Neutrophils

Auteurs: Elena Kromidas, Alicia Geier, Adrian Weghofer, Hui‐Yu Liu, Martin Weiss, Peter Loskill
Publié dans: Advanced Healthcare Materials, Numéro 13, 2024, ISSN 2192-2640
Éditeur: John Wiley and Sons Ltd
DOI: 10.1002/adhm.202302714

Deciphering respiratory viral infections by harnessing organ-on-chip technology to explore the gut–lung axis

Auteurs: Hristina Koceva, Mona Amiratashani, Parastoo Akbarimoghaddam, Bianca Hoffmann, Gaukhar Zhurgenbayeva, Mark S. Gresnigt, Vanessa Rossetto Marcelino, Christian Eggeling, Marc Thilo Figge, Maria-João Amorim, Alexander S. Mosig
Publié dans: Open Biology, Numéro 15, 2025, ISSN 2046-2441
Éditeur: Royal Society Publishing
DOI: 10.1098/rsob.240231

Other (2)

modsim/CADET: Version 4.4.0

Auteurs: Samuel Leweke, Johannes Schmölder, Eric von Lieres, Jayghosh Rao, Jazib Hassan, William Heymann, Jan Breuer, Jonathan Rocher, & Salah Azzouzi
Publié dans: 2023, ISSN 1082-9873
Éditeur: Zenodo
DOI: 10.5281/zenodo.8179016

Advancing In Silico Tools for Vaccine Development and Process Modeling

Auteurs: Irina Meln, Gunnveig Grødeland, Daniel G. Bracewell, Meta Roestenberg, Cécile van Els, Kimberly Veenstra and Ole Olesen
Publié dans: BioProcess International, 2022
Éditeur: Informa Connect Limited