Fast Infrared Coherent Harmonic Microscopy

Project Information

FAIR CHARM

Grant agreement ID: 101016457

DOI

10.3030/101016457

EC signature date 15 December 2021

Start date 1 January 2022

End date 30 June 2026

Funded under

• INDUSTRIAL LEADERSHIP - Leadership in enabling and industrial technologies - Information and Communication Technologies (ICT)

Total cost

€ 5 944 726,25

EU contribution

€ 5 944 726,25

Coordinated by

UNIVERSITE DE GENEVE
Switzerland

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Demonstrators, pilots, prototypes (4)

Functional upgraded SLIDE

D4.2 (MONTH 32) FUNCTIONAL UPGRADED SLIDE prototype with improvements based on feedback from first biomedical applications

Research-grade SLIDE @ UzL

D24 MONTH 18 Researchgrade SLIDE system functional at UZL with high framerate and fast volumetric imaging

SWIM 2 @ UniGE

D23 MONTH 18 Second SWIM prototype installed at UniGE for photophysics assessment LAV

SLIDE laboratory prototype (v1.0)

D31 MONTH 18 SLIDE laboratory prototype v10 ready to ship to UniGE month 18 and KUL month 21

Open Research Data Pilot (1)

Data Management Plan

D81 Completion of the Data Management Plan in agreement with the FAIR Findable Accessible Interoperable and Reusable principles

Websites, patent fillings, videos etc. (1)

FAIR CHARM website

D71 MONTH 3 FAIR CHARM website online

Other (1)

3D annotation software ready

D25 MONTH 18 3D annotation software and domain specific 3D image processing tools ready

Publications

Peer reviewed articles (9)

Nucleus segmentation: towards automated solutions

Author(s): R. Hollandi, N. Moshkov, L. Paavolainen, E. Tasnadi, F. Piccinini, P. Horvath
Published in: Trends in Cell Biology, Issue 32, 2022, Page(s) 295-310, ISSN 1879-3088
Publisher: Elsevier
DOI: 10.1016/j.tcb.2021.12.004

Nutrients activate distinct patterns of small-intestinal enteric neurons

Author(s): Candice Fung, Tom Venneman, Amy M. Holland, Tobie Martens, Milvia I. Alata, Marlene M. Hao, Ceyhun Alar, Yuuki Obata, Jan Tack, Alejandro Sifrim, Vassilis Pachnis, Werend Boesmans, Pieter Vanden Berghe
Published in: Nature, Issue 644, 2025, Page(s) 1069-1077, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-025-09228-z

The Effect of a Lipid Surface Coating on the Permeation of Upconverting Nanoparticles through a 3D Human Lung Epithelial Model

Author(s): Doyoung Kim, Gabrielle A. Mandl, Marta Balkota, Jimmy Vernaz, Song Huang, Samuel Constant, Pierre Maechler, Christine DeWolf, John A. Capobianco, Luigi Bonacina
Published in: Advanced Functional Material, 2024, Page(s) 2310078, ISSN 1616-301X
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/adfm.202310078

Multi-Harmonic Imaging-Based Automated Recognition of Cutaneous T-Cell Lymphoma

Author(s): Shayantani Ghosh, Olesya Pavlova, Alexandra Latshaw, Doyoung Kim, Christoph Iselin, Pauline Bernard, Pacome Prompsy, Yun-Tsan Chang, Davide Staedler, Yi-Chien Tsai, Luigi Bonacina, Emmanuella Guenova
Published in: British Journal of Dermatology, 2025, ISSN 0007-0963
Publisher: Blackwell Publishing Inc.
DOI: 10.1093/bjd/ljaf345

Effect of tissue fixation on the optical properties of structural components assessed by non-linear microscopy imaging

Author(s): M. Andrea Markus, Daniele P. Ferrari, Frauke Alves, Fernanda Ramos-Gomes
Published in: Biomedical Optics Express, Issue 14(8), 2023, Page(s) 3988-4002, ISSN 2156-7085
Publisher: The Optical Society
DOI: 10.1364/boe.488453

Cell segmentation and representation with shape priors

Author(s): D. Hirling, P. Horvath
Published in: Computational and Structural Biotechnology Journal, Issue 21, 2022, Page(s) 742-750, ISSN 2001-0370
Publisher: Elsevier
DOI: 10.1016/j.csbj.2022.12.034

Harmonic Imaging of Stem Cells in Whole Blood at GHz Pixel Rate

Author(s): Sebastian Karpf, Nina Glöckner Burmeister, Laurence Dubreil, Shayantani Ghosh, Reka Hollandi, Julien Pichon, Isabelle Leroux, Alessandra Henkel, Valerie Lutz, Jonas Jurkevičius, Alexandra Latshaw, Vasyl Kilin, Tonio Kutscher, Moritz Wiggert, Oscar Saavedra-Villanueva, Alfred Vogel, Robert A. Huber, Peter Horvath, Karl Rouger, Luigi Bonacina
Published in: Small, 2024, ISSN 1613-6810
Publisher: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.202401472

Broadband frequency-doubling of a swept-source laser from 1550 nm to 775 nm using a fan-out crystal and application in 2kHz LiDAR ranging

Author(s): Tonio F. Kutscher, Christian Stock, Florian Sommer, Jonas Jurkevicius, Stefan Meyer, Moritz Wiggert, Philipp Lamminger, Sebastian Karpf
Published in: Optics Express, Issue 33, 2025, Page(s) 10637, ISSN 1094-4087
Publisher: Optical Society of America
DOI: 10.1364/oe.541976

Deep Visual Proteomics defines single-cell identity and heterogeneity

Author(s): Andreas Mund, Fabian Coscia, András Kriston, Réka Hollandi, Ferenc Kovács, Andreas-David Brunner, Ede Migh, Lisa Schweizer, Alberto Santos, Michael Bzorek, Soraya Naimy, Lise Mette Rahbek-Gjerdrum, Beatrice Dyring-Andersen, Jutta Bulkescher, Claudia Lukas, Mark Adam Eckert, Ernst Lengyel, Christian Gnann, Emma Lundberg, Peter Horvath, Matthias Mann
Published in: Nature Biotechnology, Issue 40, 2022, Page(s) 1231–1240, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-022-01302-5