RNA Bioinformatics by Robustness Analysis of Parameter Space Optimization for Dynamic Programming

Project Information

RNA-RAPSODY

Grant agreement ID: 101029676

DOI

10.3030/101029676

Project closed

EC signature date 24 March 2021

Start date 1 May 2021

End date 17 December 2024

Funded under

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Total cost

€ 196 707,84

EU contribution

€ 196 707,84

Coordinated by

ECOLE POLYTECHNIQUE
France

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Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (4)

City composition and accessibility statistics in and around Paris

Author(s): Marie-Olive Thaury, Simon Genet, Léopold Maurice, Paola Tubaro, Sarah J. Berkemer
Published in: Frontiers in Big Data, Issue 7, 2024, ISSN 2624-909X
Publisher: Frontiers
DOI: 10.3389/fdata.2024.1354007

Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis

Author(s): Christiane Gärtner, Jörg Fallmann, Peter F. Stadler, Thorsten Kaiser, Sarah J. Berkemer
Published in: Journal of Personalized Medicine, Issue 13, 2023, Page(s) 924, ISSN 2075-4426
Publisher: MDPI
DOI: 10.3390/jpm13060924

Automated design of dynamic programming schemes for RNA folding with pseudoknots

Author(s): Bertrand Marchand, Sebastian Will, Sarah J. Berkemer, Yann Ponty, Laurent Bulteau
Published in: Algorithms for Molecular Biology, Issue 18, 2023, ISSN 1748-7188
Publisher: BioMed Central
DOI: 10.1186/s13015-023-00229-z

Infrared: a declarative tree decomposition-powered framework for bioinformatics

Author(s): Hua-Ting Yao, Bertrand Marchand, Sarah J. Berkemer, Yann Ponty, Sebastian Will
Published in: Algorithms for Molecular Biology, Issue 19, 2024, ISSN 1748-7188
Publisher: BioMed Central
DOI: 10.1186/s13015-024-00258-2

Conference proceedings (1)

RNA Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions

Author(s): Kimon Boehmer and Sarah J. Berkemer and Sebastian Will and Yann Ponty
Published in: WABI proceedings, 2024
Publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.wabi.2024.18