Deep Neuron Embeddings: Data-driven multi-modal discovery of cell types in the neocortex

Project Information

DeepNeuronEmbeddings

Grant agreement ID: 101041669

DOI

10.3030/101041669

EC signature date 8 February 2022

Start date 1 June 2022

End date 31 May 2027

Funded under

• European Research Council (ERC)

Total cost

€ 1 500 000,00

EU contribution

€ 1 500 000,00

Coordinated by

GEORG-AUGUST-UNIVERSITAT GOTTINGEN STIFTUNG OFFENTLICHEN RECHTS
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (1)

Data Management Plan

A plan for managing and publishing data will be developed.

Publications

Conference proceedings (6)

Learning to cluster neuronal function

Author(s): Nina S Nellen, Polina Turishcheva, Michaela Vystrčilová, Shashwat Sridhar, Tim Gollisch, Andreas S Tolias, Alexander S Ecker
Published in: Advances in Neural Information Processing Systems, 2025
Publisher: Advances in Neural Information Processing Systems

What should a neuron aim for? Designing local objective functions based on information theory

Author(s): Schneider, Andreas C.; Neuhaus, Valentin; Ehrlich, David Alexander; Makkeh, Abdullah; Ecker, Alexander S.; Priesemann, Viola; Wibral, Michael
Published in: International Conference on Learning Representations (ICLR), 2024
Publisher: International Conference on Learning Representations (ICLR)
DOI: 10.5281/ZENODO.15510651

The Sensorium competition on predicting large-scale mouse primary visual cortex activity

Author(s): Willeke, Konstantin F.; Fahey, Paul G.; Bashiri, Mohammad; Pede, Laura; Burg, Max F.; Blessing, Christoph; Cadena, Santiago A.; Ding, Zhiwei; Lurz, Konstantin-Klemens; Ponder, Kayla; Muhammad, Taliah; Patel, Saumil S.; Ecker, Alexander S.; Tolias, Andreas S.; Sinz, Fabian H.
Published in: Advances in Neural Information Processing Systems (NeurIPS), 2023
Publisher: Advances in Neural Information Processing Systems (NeurIPS)
DOI: 10.48550/arxiv.2206.08666

Retrospective for the Dynamic Sensorium Competition for predicting large-scale mouse primary visual cortex activity from videos

Author(s): Polina Turishcheva, Paul G. Fahey, Michaela Vystrčilová, Laura Hansel, ..., Andreas S. Tolias, Fabian H. Sinz, Alexander S. Ecker
Published in: Advances in Neural Information Processing Systems, 2024
Publisher: Advances in Neural Information Processing Systems

Most discriminative stimuli for functional cell type identification

Author(s): Burg, Max F.; Zenkel, Thomas; Vystrčilová, Michaela; Oesterle, Jonathan; Höfling, Larissa; Willeke, Konstantin F.; Lause, Jan; Müller, Sarah; Fahey, Paul G.; Ding, Zhiwei; Restivo, Kelli; Sridhar, Shashwat; Gollisch, Tim; Berens, Philipp; Tolias, Andreas S.; Euler, Thomas; Bethge, Matthias; Ecker, Alexander S.
Published in: International Conference on Learning Representations, 2024
Publisher: International Conference on Learning Representations

Reproducibility of predictive networks for mouse visual cortex

Author(s): Polina Turishcheva, Max Burg, Fabian H Sinz, Alexander Ecker
Published in: Advances in Neural Information Processing Systems, 2024
Publisher: NeurIPS Foundation

Other (4)

Bipartite invariance in mouse primary visual cortex

Author(s): Zhiwei Ding; Dat T. Tran; Kayla Ponder; Erick Cobos; Zhuokun Ding; Paul G. Fahey; Eric Wang; Taliah Muhammad; Jiakun Fu; Santiago A. Cadena; Stelios Papadopoulos; Saumil Patel; Katrin Franke; Jacob Reimer; Fabian H. Sinz; Alexander S. Ecker; Xaq Pitkow; Andreas S. Tolias
Published in: bioRxiv, 2023
Publisher: bioRxiv
DOI: 10.1101/2023.03.15.532836

MorphOcc: An Implicit Generative Model of Neuronal Morphologies

Author(s): Laura Hansel, Timo Lüddecke, Marissa A. Weis, Alexander S Ecker
Published in: OpenReview, 2023
Publisher: OpenReview

Willeke, Restivo, Franke, Nix, Cadena, ... Ecker, Sinz & Tolias (2023): Deep learning-driven characterization of single cell tuning in primate visual area V4 unveils topological organization. bioRxiv.

Author(s): Willeke, K.F., Restivo, K., Franke, K., Nix, A.F., Cadena, S.A., Shinn, T., Nealley, C., Rodriguez, G., Patel, S.S., Ecker, A.S., Sinz, F.H., & Tolias, A.S.
Published in: bioRxiv, 2023
Publisher: bioRxiv
DOI: 10.1101/2023.05.12.540591

Pattern completion and disruption characterize contextual modulation in mouse visual cortex

Author(s): Jiakun Fu; Suhas Shrinivasan; Kayla Ponder; Taliah Muhammad; Zhuokun Ding; Eric Wang; Zhiwei Ding; Dat T. Tran; Paul G. Fahey; Stelios Papadopoulos; Saumil Patel; Jacob Reimer; Alexander S. Ecker; Xaq Pitkow; Ralf M. Haefner; Fabian H. Sinz; Katrin Franke; Andreas S. Tolias
Published in: bioRxiv, 2023
Publisher: bioRxiv
DOI: 10.1101/2023.03.13.532473

Peer reviewed articles (4)

Nature Communications

Author(s): Weis, MA ... Ecker, AS
Published in: Nature Communications, 2025, ISSN 2041-1723
Publisher: Springer Nature
DOI: 10.1101/2022.12.22.521541

Foundation model of neural activity predicts response to new stimulus types

Author(s): Eric Y. Wang; Paul G. Fahey; Zhuokun Ding; Stelios Papadopoulos; Kayla Ponder; Marissa A. Weis; Andersen Chang; Taliah Muhammad; Saumil Patel; Zhiwei Ding; Dat Tran; Jiakun Fu; Casey M. Schneider-Mizell; Nuno Maçarico da Costa; R. Clay Reid; Forrest Collman; Nuno Maçarico da Costa; Katrin Franke; Alexander S. Ecker; Jacob Reimer; Xaq Pitkow; Fabian H. Sinz; Andreas S. Tolias
Published in: Nature, 2025, ISSN 1476-4687
Publisher: Springer Nature
DOI: 10.1038/S41586-025-08829-Y

Self-Supervised Graph Representation Learning for Neuronal Morphologies

Author(s): Weis, Marissa A.; Hansel, Laura; Lüddecke, Timo; Ecker, Alexander S.
Published in: Transactions on Machine Learning Research, 2023
Publisher: TMLR
DOI: 10.48550/arXiv.2112.12482

eLife

Author(s): Larissa Höfling; Klaudia P Szatko; Christian Behrens; Yuyao Deng; Yongrong Qiu; David Alexander Klindt; Zachary Jessen; Gregory W Schwartz; Matthias Bethge; Philipp Berens; Katrin Franke; Alexander S Ecker; Thomas Euler
Published in: eLife, 2024, ISSN 2050-084X
Publisher: eLife Sciences Publications Ltd
DOI: 10.7554/ELIFE.86860