Deep Neuron Embeddings: Data-driven multi-modal discovery of cell types in the neocortex

Project Information

DeepNeuronEmbeddings

Grant agreement ID: 101041669

DOI

10.3030/101041669

EC signature date 8 February 2022

Start date 1 June 2022

End date 31 May 2027

Funded under

• European Research Council (ERC)

Total cost

€ 1 500 000,00

EU contribution

€ 1 500 000,00

Coordinated by

GEORG-AUGUST-UNIVERSITAT GOTTINGEN STIFTUNG OFFENTLICHEN RECHTS
Germany

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Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Other (8)

Bipartite invariance in mouse primary visual cortex

Author(s): Zhiwei Ding; Dat T. Tran; Kayla Ponder; Erick Cobos; Zhuokun Ding; Paul G. Fahey; Eric Wang; Taliah Muhammad; Jiakun Fu; Santiago A. Cadena; Stelios Papadopoulos; Saumil Patel; Katrin Franke; Jacob Reimer; Fabian H. Sinz; Alexander S. Ecker; Xaq Pitkow; Andreas S. Tolias
Published in: bioRxiv, 2023
Publisher: bioRxiv
DOI: 10.1101/2023.03.15.532836

MorphOcc: An Implicit Generative Model of Neuronal Morphologies

Author(s): Laura Hansel, Timo Lüddecke, Marissa A. Weis, Alexander S Ecker
Published in: OpenReview, 2023
Publisher: OpenReview

An unsupervised map of excitatory neurons’ dendritic morphology in the mouse visual cortex

Author(s): Weis, MA ... Ecker, AS
Published in: bioRxiv, 2024
Publisher: bioRxiv
DOI: 10.1101/2022.12.22.521541

Willeke, Restivo, Franke, Nix, Cadena, ... Ecker, Sinz & Tolias (2023): Deep learning-driven characterization of single cell tuning in primate visual area V4 unveils topological organization. bioRxiv.

Author(s): Willeke, K.F., Restivo, K., Franke, K., Nix, A.F., Cadena, S.A., Shinn, T., Nealley, C., Rodriguez, G., Patel, S.S., Ecker, A.S., Sinz, F.H., & Tolias, A.S.
Published in: bioRxiv, 2023
Publisher: bioRxiv
DOI: 10.1101/2023.05.12.540591

Towards a Foundation Model of the Mouse Visual Cortex

Author(s): Eric Y. Wang; Paul G. Fahey; Kayla Ponder; Zhuokun Ding; Andersen Chang; Taliah Muhammad; Saumil Patel; Zhiwei Ding; Dat Tran; Jiakun Fu; Stelios Papadopoulos; Katrin Franke; Alexander S. Ecker; Jacob Reimer; Xaq Pitkow; Fabian H. Sinz; Andreas S. Tolias
Published in: bioRxiv, 2023
Publisher: bioRxiv
DOI: 10.1101/2023.03.21.533548

The Dynamic Sensorium competition for predicting large-scale mouse visual cortex activity from videos

Author(s): Turishcheva, Polina; Fahey, Paul G.; Hansel, Laura; Froebe, Rachel; Ponder, Kayla; Vystrčilová, Michaela; Willeke, Konstantin F.; Bashiri, Mohammad; Wang, Eric; Ding, Zhiwei; Tolias, Andreas S.; Sinz, Fabian H.; Ecker, Alexander S.
Published in: arXiv, 2023
Publisher: arXiv
DOI: 10.48550/arxiv.2305.19654

Pattern completion and disruption characterize contextual modulation in mouse visual cortex

Author(s): Jiakun Fu; Suhas Shrinivasan; Kayla Ponder; Taliah Muhammad; Zhuokun Ding; Eric Wang; Zhiwei Ding; Dat T. Tran; Paul G. Fahey; Stelios Papadopoulos; Saumil Patel; Jacob Reimer; Alexander S. Ecker; Xaq Pitkow; Ralf M. Haefner; Fabian H. Sinz; Katrin Franke; Andreas S. Tolias
Published in: bioRxiv, 2023
Publisher: bioRxiv
DOI: 10.1101/2023.03.13.532473

Reproducibility of predictive networks for mouse visual cortex

Author(s): Polina Turishcheva, Max Burg, Fabian H Sinz, Alexander Ecker
Published in: arXiv, 2024
Publisher: arXiv

Conference proceedings (2)

The Sensorium competition on predicting large-scale mouse primary visual cortex activity

Author(s): Willeke, Konstantin F.; Fahey, Paul G.; Bashiri, Mohammad; Pede, Laura; Burg, Max F.; Blessing, Christoph; Cadena, Santiago A.; Ding, Zhiwei; Lurz, Konstantin-Klemens; Ponder, Kayla; Muhammad, Taliah; Patel, Saumil S.; Ecker, Alexander S.; Tolias, Andreas S.; Sinz, Fabian H.
Published in: Neural Information Processing Systems (NeurIPS), 2022
Publisher: Neural Information Processing Systems (NeurIPS)
DOI: 10.48550/arxiv.2206.08666

Most discriminative stimuli for functional cell type identification

Author(s): Burg, Max F.; Zenkel, Thomas; Vystrčilová, Michaela; Oesterle, Jonathan; Höfling, Larissa; Willeke, Konstantin F.; Lause, Jan; Müller, Sarah; Fahey, Paul G.; Ding, Zhiwei; Restivo, Kelli; Sridhar, Shashwat; Gollisch, Tim; Berens, Philipp; Tolias, Andreas S.; Euler, Thomas; Bethge, Matthias; Ecker, Alexander S.
Published in: International Conference on Learning Representations, 2024
Publisher: International Conference on Learning Representations

Peer reviewed articles (1)

Self-Supervised Graph Representation Learning for Neuronal Morphologies

Author(s): Weis, Marissa A.; Hansel, Laura; Lüddecke, Timo; Ecker, Alexander S.
Published in: Transactions on Machine Learning Research, 2023
Publisher: TMLR
DOI: 10.48550/arXiv.2112.12482